* using log directory 'd:/Rcompile/CRANpkg/local/4.3/BGGM.Rcheck' * using R version 4.3.3 (2024-02-29 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * R was compiled by gcc.exe (GCC) 12.3.0 GNU Fortran (GCC) 12.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'BGGM/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'BGGM' version '2.1.2' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'BGGM' can be installed ... OK * used C++ compiler: 'g++.exe (GCC) 12.3.0' * checking C++ specification ... OK Not all R platforms support C++17 * checking installed package size ... NOTE installed size is 6.8Mb sub-directories of 1Mb or more: doc 3.3Mb help 1.1Mb libs 1.6Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [6s] OK * checking whether the package can be loaded with stated dependencies ... [5s] OK * checking whether the package can be unloaded cleanly ... [5s] OK * checking whether the namespace can be loaded with stated dependencies ... [6s] OK * checking whether the namespace can be unloaded cleanly ... [7s] OK * checking loading without being on the library search path ... [6s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [30s] OK * checking Rd files ... [9s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compiled code ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [22s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... [58s] ERROR Error(s) in re-building vignettes: --- re-building 'control.Rmd' using rmarkdown Error reading bibliography file ../inst/REFERENCES.bib: (line 59, column 1): unexpected '%' expecting white space Error: processing vignette 'control.Rmd' failed with diagnostics: pandoc document conversion failed with error 25 --- failed re-building 'control.Rmd' --- re-building 'hyp_3_ways.Rmd' using rmarkdown Error reading bibliography file ../inst/REFERENCES.bib: (line 59, column 1): unexpected '%' expecting white space Error: processing vignette 'hyp_3_ways.Rmd' failed with diagnostics: pandoc document conversion failed with error 25 --- failed re-building 'hyp_3_ways.Rmd' --- re-building 'in_tandem.Rmd' using rmarkdown Error reading bibliography file ../inst/REFERENCES.bib: (line 59, column 1): unexpected '%' expecting white space Error: processing vignette 'in_tandem.Rmd' failed with diagnostics: pandoc document conversion failed with error 25 --- failed re-building 'in_tandem.Rmd' --- re-building 'installation.Rmd' using rmarkdown Error reading bibliography file ../inst/REFERENCES.bib: (line 59, column 1): unexpected '%' expecting white space Error: processing vignette 'installation.Rmd' failed with diagnostics: pandoc document conversion failed with error 25 --- failed re-building 'installation.Rmd' --- re-building 'mcmc_diagnostics.Rmd' using rmarkdown Error reading bibliography file ../inst/REFERENCES.bib: (line 59, column 1): unexpected '%' expecting white space Error: processing vignette 'mcmc_diagnostics.Rmd' failed with diagnostics: pandoc document conversion failed with error 25 --- failed re-building 'mcmc_diagnostics.Rmd' --- re-building 'netplot.Rmd' using rmarkdown Error reading bibliography file ../inst/REFERENCES.bib: (line 59, column 1): unexpected '%' expecting white space Error: processing vignette 'netplot.Rmd' failed with diagnostics: pandoc document conversion failed with error 25 --- failed re-building 'netplot.Rmd' --- re-building 'netstat_custom.Rmd' using rmarkdown Error reading bibliography file ../inst/REFERENCES.bib: (line 59, column 1): unexpected '%' expecting white space Error: processing vignette 'netstat_custom.Rmd' failed with diagnostics: pandoc document conversion failed with error 25 --- failed re-building 'netstat_custom.Rmd' --- re-building 'ppc_custom.Rmd' using rmarkdown Error reading bibliography file ../inst/REFERENCES.bib: (line 59, column 1): unexpected '%' expecting white space Error: processing vignette 'ppc_custom.Rmd' failed with diagnostics: pandoc document conversion failed with error 25 --- failed re-building 'ppc_custom.Rmd' --- re-building 'predictability.Rmd' using rmarkdown Error reading bibliography file ../inst/REFERENCES.bib: (line 59, column 1): unexpected '%' expecting white space Error: processing vignette 'predictability.Rmd' failed with diagnostics: pandoc document conversion failed with error 25 --- failed re-building 'predictability.Rmd' --- re-building 'test_sum.Rmd' using rmarkdown Error reading bibliography file ../inst/REFERENCES.bib: (line 59, column 1): unexpected '%' expecting white space Error: processing vignette 'test_sum.Rmd' failed with diagnostics: pandoc document conversion failed with error 25 --- failed re-building 'test_sum.Rmd' --- re-building 'var_model.Rmd' using rmarkdown Error reading bibliography file ../inst/REFERENCES.bib: (line 59, column 1): unexpected '%' expecting white space Error: processing vignette 'var_model.Rmd' failed with diagnostics: pandoc document conversion failed with error 25 --- failed re-building 'var_model.Rmd' SUMMARY: processing the following files failed: 'control.Rmd' 'hyp_3_ways.Rmd' 'in_tandem.Rmd' 'installation.Rmd' 'mcmc_diagnostics.Rmd' 'netplot.Rmd' 'netstat_custom.Rmd' 'ppc_custom.Rmd' 'predictability.Rmd' 'test_sum.Rmd' 'var_model.Rmd' Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [14s] OK * checking HTML version of manual ... [16s] OK * DONE Status: 1 ERROR, 1 NOTE