* using log directory 'd:/Rcompile/CRANpkg/local/4.5/ridigbio.Rcheck'
* using R Under development (unstable) (2024-09-21 r87186 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'ridigbio/DESCRIPTION' ... OK
* this is package 'ridigbio' version '0.4.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ridigbio' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s] OK
* checking whether the package can be unloaded cleanly ... [0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s] OK
* checking loading without being on the library search path ... [0s] OK
* checking whether startup messages can be suppressed ... [0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [2s] OK
* checking Rd files ... [1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [1s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [2s] OK
  Running 'testthat.R' [2s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [221s] ERROR
Error(s) in re-building vignettes:
--- re-building 'BadCoordinateID.Rmd' using rmarkdown
--- finished re-building 'BadCoordinateID.Rmd'

--- re-building 'BasicUsage.Rmd' using rmarkdown
--- finished re-building 'BasicUsage.Rmd'

--- re-building 'Fields.Rmd' using rmarkdown

Quitting from lines 76-99 [unnamed-chunk-4] (Fields.Rmd)
Error: processing vignette 'Fields.Rmd' failed with diagnostics:
replacement has length zero
--- failed re-building 'Fields.Rmd'

--- re-building 'FindTissue.Rmd' using rmarkdown
--- finished re-building 'FindTissue.Rmd'

--- re-building 'IDDataFlags.Rmd' using rmarkdown
--- finished re-building 'IDDataFlags.Rmd'

--- re-building 'MediaAPIDemo.Rmd' using rmarkdown
Warning in get_engine(options$engine) :
  Unknown language engine 'undefined' (must be registered via knit_engines$set()).
--- finished re-building 'MediaAPIDemo.Rmd'

--- re-building 'ModifiedDataID.Rmd' using rmarkdown
--- finished re-building 'ModifiedDataID.Rmd'

--- re-building 'RecordAPIDemo.Rmd' using rmarkdown
--- finished re-building 'RecordAPIDemo.Rmd'

--- re-building 'ridigbio.Rmd' using rmarkdown
--- finished re-building 'ridigbio.Rmd'

SUMMARY: processing the following file failed:
  'Fields.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [22s] OK
* checking HTML version of manual ... [4s] OK
* DONE
Status: 1 ERROR