TENxBrainData

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see TENxBrainData.

Data from the 10X 1.3 Million Brain Cell Study


Bioconductor version: 3.15

Single-cell RNA-seq data for 1.3 million brain cells from E18 mice, generated by 10X Genomics.

Author: Aaron Lun [aut], Martin Morgan [aut], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("TENxBrainData")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TENxBrainData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TENxBrainData")
Exploring the 1.3 million brain cell scRNA-seq data from 10X Genomics HTML R Script
Reference Manual PDF

Details

biocViews ExperimentData, ExpressionData, RNASeqData, SequencingData, SingleCellData
Version 1.16.0
License CC BY 4.0
Depends SingleCellExperiment, HDF5Array
Imports AnnotationHub(>= 2.9.22), ExperimentHub
System Requirements
URL
See More
Suggests knitr, BiocStyle, snow, BiocFileCache, BiocParallel, data.table, rmarkdown
Linking To
Enhances
Depends On Me OSCA.advanced
Imports Me
Suggests Me HDF5Array
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TENxBrainData_1.16.0.tar.gz
Windows Binary
macOS Binary (x86_64)
Source Repository git clone https://git.bioconductor.org/packages/TENxBrainData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TENxBrainData
Package Short Url https://bioconductor.org/packages/TENxBrainData/
Package Downloads Report Download Stats