Changes in version 1.59.5                        

  - Merge inst/NEWS to NEWS.md

                       Changes in version 1.59.4                        

  - Update broken links in vignette.

  - Update broken links in vignette.

  - Add BugReports link.

  - Add missing dependencies 'rmarkdown' and 'bookdown' to Suggests.

                       Changes in version 1.59.3                        

  - Package undeprecated by the Bioconductor maintainers.

                       Changes in version 1.59.2                        

  - Turned old .Rnw vignette to .Rmd vignette.

  - GLAD no more listed in Depends (only in Imports).

  - Moved to UTF-8 encoding (to cope with French accents).

  - Updated maintainer email address.

  - Fixed "register native routines and to disable symbol search".

  - Use R's RNG instead of the one from the system in C code.

                 Changes in version 1.37.2 (2014-10-01)                 

  - Removed unused C functions for I/O in 'lib_io'.

                 Changes in version 1.37.1 (2014-10-01)                 

  - Minor changes to C code to avoid WARNINGS upon R CMD check.

  - Changed 'par' settings in vignette to avoid 'Figure margins too
    large' errors.

                 Changes in version 1.33.1 (2013-07-03)                 

  - Replaced calls to 'exit', 'fprintf' which now raise a WARNING upon
    check.

  - Iteration index not printed anymore in 'nem' (raised an error when
    compiling the vignette).

                 Changes in version 1.23.3 (2011-03-18)                 

  - Updated calls to 'GLAD:::daglad' in the vignette to fix an error
    caused by changes in the defaults of 'daglad'.

                 Changes in version 1.21.1 (2010-10-01)                 

  - Cleaned 'data/flags.RData" which contained objects from an old
    'globalenv'.

  - Updated maintainer's email address.

                 Changes in version 1.19.1 (2010-01-24)                 

  - Added (back) 'intensity.flag' to 'data/flags.RData' (had been
    removed since v 1.12.0 for an unknown reason).

                 Changes in version 1.15.4 (2009-01-15)                 

  - misplaced alignment tab in man/spatial.Rd.

                 Changes in version 1.15.3 (2009-01-13)                 

  - updated references in .Rd files.

  - fixed warnings due to incorrect use of \item in .Rd files.

                 Changes in version 1.15.2 (2009-01-06)                 

  - 'norm' and 'sort' are now S3 methods as well

                 Changes in version 1.15.1 (2009-01-04)                 

  - (almost) one file per function in R/

  - removed empty section \details in man/qscore.Rd

  - added a NAMESPACE

  - removed inst/doc/Makefile (not needed anymore because no html output
    required)

  - removed another non-standard keyword

  - only one keyword per \keyword entry...

                 Changes in version 1.15.0 (2008-12-31)                 

  - now use standard "keyword"s

  - changed \link{\code{stuff}} into \code{\link{stuff}}

  - filled in "keyword" sections in .Rd files.

  - removed empty "examples" sections from .Rd files.

  - initialized a few variables upon declaration in C code to prevent
    warnings in R CMD CHECK.

                 Changes in version 1.13.2 (2008-09-23)                 

  - modification de la fonction cv pour retourner NA lorsque toutes la
    valeurs du vecteur sont à NA

  - modification de la function getChromosomeArm pour que cytoband ne
    soit pas positionnée à NULL

                 Changes in version 1.13.1 (2008-09-04)                 

  - added a CHANGELOG

  - updated outdated reference in the .bib file

  - changed the definition of flag "rep.flag" to avoid the error now
    caused by sd(NA, na.rm=TRUE)