scMAGeCK

This package is for version 3.15 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see scMAGeCK.

Identify genes associated with multiple expression phenotypes in single-cell CRISPR screening data


Bioconductor version: 3.15

scMAGeCK is a computational model to identify genes associated with multiple expression phenotypes from CRISPR screening coupled with single-cell RNA sequencing data (CROP-seq)

Author: Wei Li, Xiaolong Cheng, Lin Yang

Maintainer: Xiaolong Cheng <xiaolongcheng1120 at gmail.com>

Citation (from within R, enter citation("scMAGeCK")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("scMAGeCK")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scMAGeCK")
scMAGeCK HTML R Script
Reference Manual PDF

Details

biocViews CRISPR, GeneExpression, PooledScreens, RNASeq, Regression, SingleCell, Software, Transcriptomics
Version 1.8.0
In Bioconductor since BioC 3.11 (R-4.0) (4 years)
License BSD_2_clause
Depends
Imports Seurat, ggplot2, stats, utils
System Requirements
URL
See More
Suggests knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package scMAGeCK_1.8.0.tar.gz
Windows Binary scMAGeCK_1.8.0.zip
macOS Binary (x86_64) scMAGeCK_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/scMAGeCK
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/scMAGeCK
Bioc Package Browser https://code.bioconductor.org/browse/scMAGeCK/
Package Short Url https://bioconductor.org/packages/scMAGeCK/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.15 Source Archive