FoldGO

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see FoldGO.

Package for Fold-specific GO Terms Recognition


Bioconductor version: 3.15

FoldGO is a package designed to annotate gene sets derived from expression experiments and identify fold-change-specific GO terms.

Author: Daniil Wiebe <daniil.wiebe at gmail.com> [aut, cre]

Maintainer: Daniil Wiebe <daniil.wiebe at gmail.com>

Citation (from within R, enter citation("FoldGO")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("FoldGO")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("FoldGO")
FoldGO: a tool for fold-change-specific functional enrichment analysis HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DifferentialExpression, GO, GeneExpression, Software
Version 1.14.0
In Bioconductor since BioC 3.8 (R-3.5) (5.5 years)
License GPL-3
Depends R (>= 4.0)
Imports topGO(>= 2.30.1), ggplot2 (>= 2.2.1), tidyr (>= 0.8.0), stats, methods
System Requirements
URL
See More
Suggests knitr, rmarkdown, devtools, kableExtra
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package FoldGO_1.14.0.tar.gz
Windows Binary FoldGO_1.14.0.zip
macOS Binary (x86_64) FoldGO_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/FoldGO
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/FoldGO
Bioc Package Browser https://code.bioconductor.org/browse/FoldGO/
Package Short Url https://bioconductor.org/packages/FoldGO/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.15 Source Archive