@article{bourgon2010independent,
  title =	 {Independent filtering increases detection power for high-throughput
                  experiments},
  author =	 {Bourgon, Richard and Gentleman, Robert and Huber, Wolfgang},
  journal =	 {Proceedings of the National Academy of Sciences (PNAS)},
  volume =	 107,
  number =	 21,
  pages =	 {9546--9551},
  year =	 2010,
}

@article{ignatiadis2015data,
  title =	 {Data-driven hypothesis weighting increases detection power in big data
                  analytics},
  author =	 {Ignatiadis, Nikolaos and Klaus, Bernd and Zaugg, Judith B and Huber,
                  Wolfgang},
  journal =	 {bioRxiv},
  pages =	 034330,
  year =	 2015,
  publisher =	 {Cold Spring Harbor Labs Journals}
}

@Article{ignatiadis2016natmeth,
  title =	 {Data-driven hypothesis weighting increases detection power in
                  genome-scale multiple testing},
  author =	 {Ignatiadis, Nikolaos and Klaus, Bernd and Zaugg, Judith B and Huber,
                  Wolfgang},
  journal =	 {Nature Methods},
  year = 	 {2016},
  doi =          {10.1038/nmeth.3885}
}

@article{love2014moderated,
  title =	 {Moderated estimation of fold change and dispersion for {RNA-Seq} data
                  with {DESeq2}},
  author =	 {Love, Michael I and Huber, Wolfgang and Anders, Simon},
  journal =	 {Gnome Biology},
  volume =	 15,
  number =	 12,
  pages =	 550,
  year =	 2014}

@article{ochoa2015beyond,
  title =	 {Beyond the E-value: stratified statistics for protein domain prediction},
  author =	 {Ochoa, Alejandro and Storey, John D and Llin{\'a}s, Manuel and Singh,
                  Mona},
  journal =	 {PLoS Computational Biology},
  volume =	 11,
  number =	 11,
  pages =	 {e1004509},
  year =	 2015}

@article{shabalin2012matrix,
  title =	 {Matrix {eQTL}: ultra fast {eQTL} analysis via large matrix operations},
  author =	 {Shabalin, Andrey A},
  journal =	 {Bioinformatics},
  volume =	 28,
  number =	 10,
  pages =	 {1353--1358},
  year =	 2012}

@article{benjamini1995controlling,
  title =	 {Controlling the false discovery rate: a practical and powerful approach
                  to multiple testing},
  author =	 {Benjamini, Yoav and Hochberg, Yosef},
  journal =	 {Journal of the Royal Statistical Society. Series B (Statistical
                  Methodology)},
  pages =	 {289--300},
  year =	 1995
}