Robert Scharpf
| Snapshot Date: 2019-03-17 17:01:51 -0400 (Sun, 17 Mar 2019) |
| URL: https://git.bioconductor.org/packages/VanillaICE |
| Branch: master |
| Last Commit: c05bd5c |
| Last Changed Date: 2018-10-30 11:54:27 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-03-18 11:43:19 -0400 (Mon, 18 Mar 2019).
| Package 1641/1676 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||
| VanillaICE 1.45.0 Robert Scharpf
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | |||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | ERROR | ERROR | skipped | |||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS |
| Package: VanillaICE |
| Version: 1.45.0 |
| Command: rm -rf VanillaICE.buildbin-libdir && mkdir VanillaICE.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh VanillaICE_1.45.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R VanillaICE.buildbin-libdir |
| StartedAt: 2019-03-18 07:29:01 -0400 (Mon, 18 Mar 2019) |
| EndedAt: 2019-03-18 07:29:48 -0400 (Mon, 18 Mar 2019) |
| EllapsedTime: 47.4 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: VanillaICE_1.45.0.tgz |
| PackageFileSize: 2.435 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf VanillaICE.buildbin-libdir && mkdir VanillaICE.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh VanillaICE_1.45.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R VanillaICE.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=VanillaICE.buildbin-libdir VanillaICE_1.45.0.tar.gz' >>>>>>> * installing *source* package ‘VanillaICE’ ... ** libs clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c rinit.c -o rinit.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c viterbi.c -o viterbi.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o VanillaICE.so rinit.o viterbi.o -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.9-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Warning in reconcilePropertiesAndPrototype(name, slots, prototype, superClasses, : The prototype for class “SnpDataFrame” has undefined slot(s): 'isSnp' Creating a new generic function for ‘distance’ in package ‘VanillaICE’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (VanillaICE) >>>>>>> >>>>>>> FIXING LINKS FOR VanillaICE.buildbin-libdir/VanillaICE/libs//VanillaICE.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs//VanillaICE.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs//VanillaICE.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs//VanillaICE.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs//VanillaICE.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "VanillaICE.buildbin-libdir/VanillaICE/libs//VanillaICE.so"