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BUILD BIN report for Harman on tokay2

This page was generated on 2019-03-24 11:59:39 -0400 (Sun, 24 Mar 2019).

Package 723/1685HostnameOS / ArchINSTALLBUILDCHECK
Harman 1.11.0
Jason Ross
Snapshot Date: 2019-03-23 17:00:11 -0400 (Sat, 23 Mar 2019)
URL: https://git.bioconductor.org/packages/Harman
Branch: master
Last Commit: 61ae188
Last Changed Date: 2018-10-30 11:54:36 -0400 (Tue, 30 Oct 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  OK UNNEEDED, same version exists in internal repository
celaya2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK 

Summary

Package: Harman
Version: 1.11.0
Command: rm -rf Harman.buildbin-libdir && mkdir Harman.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Harman.buildbin-libdir Harman_1.11.0.tar.gz
StartedAt: 2019-03-24 08:06:15 -0400 (Sun, 24 Mar 2019)
EndedAt: 2019-03-24 08:08:21 -0400 (Sun, 24 Mar 2019)
EllapsedTime: 125.7 seconds
RetCode: 0
Status:  OK  
PackageFile: Harman_1.11.0.zip
PackageFileSize: 1.278 MiB

Command output

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### Running command:
###
###   rm -rf Harman.buildbin-libdir && mkdir Harman.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Harman.buildbin-libdir Harman_1.11.0.tar.gz
###
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install for i386

* installing *source* package 'Harman' ...
** libs
C:/Rtools/mingw_32/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -D_ARRAYALIGNEMT=4  -D_USE_RCPP=1  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"  -IC:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include -std=c++0x    -O2 -Wall  -mtune=generic -c Harman.cpp -o Harman.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o Harman.dll tmp.def Harman.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/Harman.buildbin-libdir/00LOCK-Harman/00new/Harman/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Harman'
    finding HTML links ... done
    arrowPlot                               html  
    callHarman                              html  
    detachHarman                            html  
    harman                                  html  
    harmanScores                            html  
    harmanresults                           html  
    pcaPlot                                 html  
    plot.harmanresults                      html  
    prcompPlot                              html  
    print.summary.harmanresults             html  
    reconstructData                         html  
    shiftBetas                              html  
    summary.harmanresults                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'Harman' ...
** libs
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -D_ARRAYALIGNEMT=4  -D_USE_RCPP=1  -I"C:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include"   -I"C:/extsoft/include"  -IC:/Users/biocbuild/bbs-3.9-bioc/R/library/Rcpp/include -std=c++0x    -O2 -Wall  -mtune=generic -c Harman.cpp -o Harman.o
In file included from Harman.cpp:182:0:
CSelectRandom.h: In instantiation of 'std::vector<unsigned int>* CSelectRandom<T>::ReturnVectOf32bitIntegersInRange_CSTDLIB(size_t, size_t, size_t, size_t) [with T = double; size_t = long long unsigned int]':
Harman.cpp:1764:117:   required from here
CSelectRandom.h:943:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     while (currval < howManyIN)
                    ^
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o Harman.dll tmp.def Harman.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/Harman.buildbin-libdir/Harman/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Harman' as Harman_1.11.0.zip
* DONE (Harman)