############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SingscoreAMLMutations ### ############################################################################## ############################################################################## * checking for file ‘SingscoreAMLMutations/DESCRIPTION’ ... OK * preparing ‘SingscoreAMLMutations’: * checking DESCRIPTION meta-information ...Warning in person1(given = given[[i]], family = family[[i]], middle = middle[[i]], : It is recommended to use ‘given’ instead of ‘middle’. Warning in person1(given = given[[i]], family = family[[i]], middle = middle[[i]], : It is recommended to use ‘given’ instead of ‘middle’. OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘workflow_transcriptional_mut_sig.Rmd’ using rmarkdown Quitting from lines 149-155 [gdc_query] (workflow_transcriptional_mut_sig.Rmd) Error: processing vignette 'workflow_transcriptional_mut_sig.Rmd' failed with diagnostics: cannot open the connection to 'https://api.gdc.cancer.gov/status' --- failed re-building ‘workflow_transcriptional_mut_sig.Rmd’ --- re-building ‘workflow_transcriptional_mut_sig_chinese.Rmd’ using rmarkdown Quitting from lines 146-152 [gdc_query] (workflow_transcriptional_mut_sig_chinese.Rmd) Error: processing vignette 'workflow_transcriptional_mut_sig_chinese.Rmd' failed with diagnostics: cannot open the connection to 'https://api.gdc.cancer.gov/status' --- failed re-building ‘workflow_transcriptional_mut_sig_chinese.Rmd’ SUMMARY: processing the following files failed: ‘workflow_transcriptional_mut_sig.Rmd’ ‘workflow_transcriptional_mut_sig_chinese.Rmd’ Error: Vignette re-building failed. Execution halted