############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r RnaSeqGeneEdgeRQL -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data RnaSeqGeneEdgeRQL ### ############################################################################## ############################################################################## * checking for file 'RnaSeqGeneEdgeRQL/DESCRIPTION' ... OK * preparing 'RnaSeqGeneEdgeRQL': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'edgeRQL.Rmd' using rmarkdown trying URL 'http://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE60450&format=file&file=GSE60450_Lactation-GenewiseCounts.txt.gz' Content type 'application/octet-stream' length 513592 bytes (501 KB) ================================================== downloaded 501 KB Quitting from lines 405-407 [decideTests] (edgeRQL.Rmd) Error: processing vignette 'edgeRQL.Rmd' failed with diagnostics: could not find function "decideTestsDGE" --- failed re-building 'edgeRQL.Rmd' SUMMARY: processing the following file failed: 'edgeRQL.Rmd' Error: Vignette re-building failed. Execution halted