############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data variancePartition ### ############################################################################## ############################################################################## * checking for file ‘variancePartition/DESCRIPTION’ ... OK * preparing ‘variancePartition’: * checking DESCRIPTION meta-information ... OK * installing the package to process help pages Loading required namespace: variancePartition * saving partial Rd database * creating vignettes ... ERROR --- re-building ‘FAQ.Rmd’ using rmarkdown --- finished re-building ‘FAQ.Rmd’ --- re-building ‘additional_visualization.Rmd’ using rmarkdown --- finished re-building ‘additional_visualization.Rmd’ --- re-building ‘dream.Rmd’ using rmarkdown Quitting from lines 114-133 [dupCor] (dream.Rmd) Error: processing vignette 'dream.Rmd' failed with diagnostics: C stack usage 7970468 is too close to the limit --- failed re-building ‘dream.Rmd’ --- re-building ‘errors.Rmd’ using rmarkdown --- finished re-building ‘errors.Rmd’ --- re-building ‘mvtests.Rmd’ using rmarkdown Quitting from lines 79-95 [dream] (mvtests.Rmd) Error: processing vignette 'mvtests.Rmd' failed with diagnostics: C stack usage 7970468 is too close to the limit --- failed re-building ‘mvtests.Rmd’ --- re-building ‘rnd_effects.Rmd’ using rmarkdown --- finished re-building ‘rnd_effects.Rmd’ --- re-building ‘variancePartition.Rmd’ using rmarkdown --- finished re-building ‘variancePartition.Rmd’ SUMMARY: processing the following files failed: ‘dream.Rmd’ ‘mvtests.Rmd’ Error: Vignette re-building failed. Execution halted