############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:ternarynet.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings ternarynet_1.49.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/ternarynet.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * checking for file ‘ternarynet/DESCRIPTION’ ... OK * this is package ‘ternarynet’ version ‘1.49.0’ * checking package namespace information ... OK * checking package dependencies ...Warning in gzfile(file, "rb") : cannot open compressed file '/tmp/RtmpRvgVqq/repos_https%3A%2F%2Fbioconductor.org%2Fpackages%2F3.19%2Fdata%2Fannotation%2Fsrc%2Fcontrib.rds', probable reason 'No such file or directory' Warning in read.dcf(file = tmpf) : cannot open compressed file '/tmp/RtmpRvgVqq/file2b583557c85f47', probable reason 'No such file or directory' Warning: unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/src/contrib: cannot open the connection Warning in gzfile(file, "rb") : cannot open compressed file '/tmp/RtmpRvgVqq/repos_https%3A%2F%2Fbioconductor.org%2Fpackages%2F3.19%2Fdata%2Fexperiment%2Fsrc%2Fcontrib.rds', probable reason 'No such file or directory' Warning in read.dcf(file = tmpf) : cannot open compressed file '/tmp/RtmpRvgVqq/file2b5835f54beb8', probable reason 'No such file or directory' Warning: unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/src/contrib: cannot open the connection OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ternarynet’ can be installed ... OK * used C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ * used C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ...Error in file(con, "w") : cannot open the connection Execution halted