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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD check --install=check:singleCellTK.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings singleCellTK_2.16.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/singleCellTK.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    gcc (GCC) 12.2.1 20220819 (openEuler 12.2.1-14)
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘singleCellTK/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘singleCellTK’ version ‘2.16.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘singleCellTK’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  7.0Mb
  sub-directories of 1Mb or more:
    R         1.0Mb
    extdata   1.6Mb
    shiny     3.0Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                           user system elapsed
runSeuratSCTransform     44.671  0.447  45.236
plotScDblFinderResults   43.821  0.292  42.575
plotDoubletFinderResults 43.191  0.155  43.305
runDoubletFinder         39.610  0.156  39.724
runScDblFinder           30.363  0.223  28.937
importExampleData        15.660  1.600  23.423
plotBatchCorrCompare     14.155  0.207  14.376
plotScdsHybridResults    12.382  0.151  11.492
plotBcdsResults          10.952  0.176  10.076
plotDecontXResults        9.676  0.112   9.695
runDecontX                8.942  0.063   9.022
plotTSCANClusterDEG       8.564  0.012   8.593
runUMAP                   8.307  0.068   8.383
plotCxdsResults           8.253  0.036   8.298
plotUMAP                  8.130  0.104   8.246
detectCellOutlier         7.167  0.056   7.287
plotFindMarkerHeatmap     6.345  0.052   6.411
plotDEGViolin             6.066  0.068   6.147
plotEmptyDropsResults     5.927  0.052   5.987
plotEmptyDropsScatter     5.854  0.016   5.878
convertSCEToSeurat        5.549  0.140   5.703
runEmptyDrops             5.534  0.004   5.545
runFindMarker             5.018  0.204   5.235
plotDEGRegression         5.084  0.040   5.135
getEnrichRResult          0.478  0.081  35.357
runEnrichR                0.429  0.004  11.984
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘spelling.R’
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.20-bioc/meat/singleCellTK.Rcheck/00check.log’
for details.