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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD check --install=check:sRACIPE.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings sRACIPE_1.22.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/sRACIPE.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    gcc (GCC) 12.2.1 20220819 (openEuler 12.2.1-14)
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘sRACIPE/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘sRACIPE’ version ‘1.22.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘sRACIPE’ can be installed ... OK
* used C++ compiler: ‘g++ (conda-forge gcc 14.2.0-1) 14.2.0’
* checking C++ specification ... NOTE
  Specified C++11: please drop specification unless essential
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
sracipeSimulate: no visible global function definition for
  ‘registerDoFuture’
sracipeSimulate: no visible global function definition for ‘plan’
sracipeSimulate: no visible global function definition for ‘%dopar%’
sracipeSimulate: no visible global function definition for ‘foreach’
sracipeSimulate: no visible binding for global variable
  ‘configurationTmp’
sracipeSimulate: no visible binding for global variable ‘outFileGETmp’
sracipeSimulate: no visible binding for global variable
  ‘outFileParamsTmp’
sracipeSimulate: no visible binding for global variable ‘outFileICTmp’
Undefined global functions or variables:
  %dopar% configurationTmp foreach outFileGETmp outFileICTmp
  outFileParamsTmp plan registerDoFuture
* checking Rd files ... NOTE
checkRd: (-1) sracipeHeatmapSimilarity.Rd:31: Lost braces
    31 | If clusterCut is missing, hierarchical clustering using /code{ward.D2}
       |                                                              ^
checkRd: (-1) sracipeHeatmapSimilarity.Rd:32: Lost braces
    32 | and /code{distance  = (1-cor(x, method = "spear"))/2} will be used to 
       |          ^
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                  user system elapsed
sracipeSimulate 18.718   0.08  18.818
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 5 NOTEs
See
  ‘/home/biocbuild/bbs-3.20-bioc/meat/sRACIPE.Rcheck/00check.log’
for details.