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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:rcellminer.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings rcellminer_2.27.1.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/rcellminer.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.7
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘rcellminer/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘rcellminer’ version ‘2.27.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘rcellminer’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘shiny’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
checkRd: (7) cmVersion.Rd:17: Invalid email address: vinodh.rajapakse AT nih.gov
checkRd: (-1) drugDB.Rd:13-14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drugDB.Rd:15-38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drugDB.Rd:17-18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drugDB.Rd:19: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drugDB.Rd:20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drugDB.Rd:21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drugDB.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drugDB.Rd:23-24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drugDB.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drugDB.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drugDB.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drugDB.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drugDB.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drugDB.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drugDB.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drugDB.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drugDB.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drugDB.Rd:34-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) drugDB.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (7) drugDB.Rd:45: Invalid email address: vinodh.rajapakse AT nih.gov
checkRd: (-1) elNetMolDataNCI60.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) elNetMolDataNCI60.Rd:15-17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) elNetMolDataNCI60.Rd:18: Lost braces in \itemize; meant \describe ?
checkRd: (-1) elNetMolDataNCI60.Rd:19-20: Lost braces in \itemize; meant \describe ?
checkRd: (-1) elNetMolDataNCI60.Rd:21-22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) elNetMolDataNCI60.Rd:23-40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) elNetMolDataNCI60.Rd:25: Lost braces in \itemize; meant \describe ?
checkRd: (-1) elNetMolDataNCI60.Rd:26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) elNetMolDataNCI60.Rd:27: Lost braces in \itemize; meant \describe ?
checkRd: (-1) elNetMolDataNCI60.Rd:28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) elNetMolDataNCI60.Rd:29: Lost braces in \itemize; meant \describe ?
checkRd: (-1) elNetMolDataNCI60.Rd:30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) elNetMolDataNCI60.Rd:31: Lost braces in \itemize; meant \describe ?
checkRd: (-1) elNetMolDataNCI60.Rd:32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) elNetMolDataNCI60.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) elNetMolDataNCI60.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) elNetMolDataNCI60.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) elNetMolDataNCI60.Rd:36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) elNetMolDataNCI60.Rd:37-38: Lost braces in \itemize; meant \describe ?
checkRd: (7) elNetMolDataNCI60.Rd:47: Invalid email address: vinodh.rajapakse AT nih.gov
checkRd: (7) fingerprintList.Rd:14: Invalid email address: augustin AT mail.nih.gov
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.20-bioc/meat/rcellminer.Rcheck/00check.log’
for details.