############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL pqsfinder ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4.1/site-library’ * installing *source* package ‘pqsfinder’ ... ** using staged installation ** libs using C++ compiler: ‘g++ (conda-forge gcc 14.2.0-1) 14.2.0’ using C++11 g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.1/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:680, from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/requires_hosted.h:31, from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:41, from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/platform/compiler.h:100, from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/r/headers.h:66, from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/RcppCommon.h:30, from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp.h:27, from RcppExports.cpp:4: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/os_defines.h:44:19: error: missing binary operator before token "(" 44 | #if __GLIBC_PREREQ(2,15) && defined(_GNU_SOURCE) | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/os_defines.h:55:19: error: missing binary operator before token "(" 55 | #if __GLIBC_PREREQ(2, 26) \ | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/os_defines.h:71:20: error: missing binary operator before token "(" 71 | # if __GLIBC_PREREQ(2, 27) | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/os_defines.h:83:20: error: missing binary operator before token "(" 83 | # if __GLIBC_PREREQ(2, 34) | ^ In file included from /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/math.h:33, from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:47: /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/huge_val.h:27:18: error: missing binary operator before token "(" 27 | #if __GNUC_PREREQ(3,3) | ^ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/huge_val.h:29:20: error: missing binary operator before token "(" 29 | #elif __GNUC_PREREQ(2,96) | ^ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/math.h:396:42: error: missing binary operator before token "(" 396 | #if defined __USE_ISOC99 && __GNUC_PREREQ(2,97) | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1152:7: error: missing binary operator before token "(" 1152 | && !_GLIBCXX_NO_OBSOLETE_ISINF_ISNAN_DYNAMIC | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1179:7: error: missing binary operator before token "(" 1179 | && !_GLIBCXX_NO_OBSOLETE_ISINF_ISNAN_DYNAMIC | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:44, from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/postypes.h:40, from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h:42, from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/string:42, from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/macros/macros.h:25, from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/r/headers.h:68: /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:74:43: error: missing binary operator before token "(" 74 | # if defined __cplusplus && __GNUC_PREREQ (4, 4) | ^ In file included from /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/libio.h:57, from /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:74, from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:42, from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/ext/string_conversions.h:45, from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4154, from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/string:54: /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:42:20: error: missing binary operator before token "(" 42 | # if __GNUC_PREREQ (4, 6) && !defined _LIBC | ^ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:55:44: error: missing binary operator before token "(" 55 | # if !defined __cplusplus && __GNUC_PREREQ (3, 3) | ^ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:60:44: error: missing binary operator before token "(" 60 | # if defined __cplusplus && __GNUC_PREREQ (2,8) | ^ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:144:19: error: missing binary operator before token "(" 144 | #if __GNUC_PREREQ (4,3) | ^ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:157:19: error: missing binary operator before token "(" 157 | #if __GNUC_PREREQ (2,97) | ^ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:219:19: error: missing binary operator before token "(" 219 | #if __GNUC_PREREQ (2,96) | ^ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:228:19: error: missing binary operator before token "(" 228 | #if __GNUC_PREREQ (2,96) | ^ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:235:19: error: missing binary operator before token "(" 235 | #if __GNUC_PREREQ (2,5) | ^ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:244:19: error: missing binary operator before token "(" 244 | #if __GNUC_PREREQ (3,1) | ^ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:253:19: error: missing binary operator before token "(" 253 | #if __GNUC_PREREQ (3,2) | ^ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:265:19: error: missing binary operator before token "(" 265 | #if __GNUC_PREREQ (2,8) | ^ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:275:19: error: missing binary operator before token "(" 275 | #if __GNUC_PREREQ (2,97) | ^ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:284:19: error: missing binary operator before token "(" 284 | #if __GNUC_PREREQ (3,3) | ^ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:292:19: error: missing binary operator before token "(" 292 | #if __GNUC_PREREQ (3,4) | ^ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:306:19: error: missing binary operator before token "(" 306 | #if __GNUC_PREREQ (3,2) | ^ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:314:19: error: missing binary operator before token "(" 314 | #if __GNUC_PREREQ (4,3) | ^ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:329:44: error: missing binary operator before token "(" 329 | #if (!defined __cplusplus || __GNUC_PREREQ (4,3) \ | ^ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:348:19: error: missing binary operator before token "(" 348 | #if __GNUC_PREREQ (4,3) | ^ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:357:20: error: missing binary operator before token "(" 357 | #if !__GNUC_PREREQ (2,8) | ^ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:362:20: error: missing binary operator before token "(" 362 | #if !__GNUC_PREREQ (2,92) | ^ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sys/cdefs.h:369:19: error: missing binary operator before token "(" 369 | #if __GNUC_PREREQ (3,1) && !defined __GNUG__ | ^ In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstring:43, from /home/biocbuild/R/R-4.4.1/include/R_ext/RS.h:30, from /home/biocbuild/R/R-4.4.1/include/R.h:78, from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/r/headers.h:70: /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:35:42: error: missing binary operator before token "(" 35 | #if defined __cplusplus && __GNUC_PREREQ (4, 4) | ^ In file included from /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/sched.h:42, from /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/pthread.h:23, from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/gthr-default.h:35, from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/gthr.h:157, from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/ext/atomicity.h:35, from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/ios_base.h:39, from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/streambuf:43, from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/streambuf_iterator.h:35, from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/iterator:66, from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/RcppCommon.h:51: /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/sched.h:132:20: error: missing binary operator before token "(" 132 | # if __GNUC_PREREQ (2, 91) | ^ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/sched.h:170:20: error: missing binary operator before token "(" 170 | # if __GNUC_PREREQ (2, 91) | ^ In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cassert:44, from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/utils/tinyformat/tinyformat.h:137, from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/utils/tinyformat.h:40, from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/RcppCommon.h:74: /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/assert.h:38:42: error: missing binary operator before token "(" 38 | #if defined __cplusplus && __GNUC_PREREQ (2,95) | ^ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/math.h:29:1: error: '__BEGIN_DECLS' does not name a type 29 | __BEGIN_DECLS | ^~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: error: '__' was not declared in this scope 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: error: 'acos' was not declared in this scope 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: error: '__CONCAT' cannot be used as a function 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: error: expected primary-expression before ')' token 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: error: expression list treated as compound expression in initializer [-fpermissive] /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:56:1: error: redefinition of 'double __CONCAT' 56 | __MATHCALL (asin,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:56:1: error: 'asin' was not declared in this scope 56 | __MATHCALL (asin,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:56:1: error: expected primary-expression before ')' token 56 | __MATHCALL (asin,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:56:1: error: redefinition of 'double __CONCAT' 56 | __MATHCALL (asin,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:56:1: error: '__' was not declared in this scope 56 | __MATHCALL (asin,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:56:1: error: 'asin' was not declared in this scope 56 | __MATHCALL (asin,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:56:1: error: '__CONCAT' cannot be used as a function 56 | __MATHCALL (asin,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:56:1: error: expected primary-expression before ')' token 56 | __MATHCALL (asin,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:58:1: error: redefinition of 'double __CONCAT' 58 | __MATHCALL (atan,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:58:1: error: 'atan' was not declared in this scope 58 | __MATHCALL (atan,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:58:1: error: expected primary-expression before ')' token 58 | __MATHCALL (atan,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:58:1: error: redefinition of 'double __CONCAT' 58 | __MATHCALL (atan,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:58:1: error: '__' was not declared in this scope 58 | __MATHCALL (atan,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:58:1: error: 'atan' was not declared in this scope 58 | __MATHCALL (atan,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:58:1: error: '__CONCAT' cannot be used as a function 58 | __MATHCALL (atan,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:58:1: error: expected primary-expression before ')' token 58 | __MATHCALL (atan,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:60:1: error: redefinition of 'double __CONCAT' 60 | __MATHCALL (atan2,, (_Mdouble_ __y, _Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:60:1: error: 'atan2' was not declared in this scope 60 | __MATHCALL (atan2,, (_Mdouble_ __y, _Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:60:1: error: expected primary-expression before ')' token 60 | __MATHCALL (atan2,, (_Mdouble_ __y, _Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:60:1: error: redefinition of 'double __CONCAT' 60 | __MATHCALL (atan2,, (_Mdouble_ __y, _Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:60:1: error: '__' was not declared in this scope 60 | __MATHCALL (atan2,, (_Mdouble_ __y, _Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:60:1: error: 'atan2' was not declared in this scope 60 | __MATHCALL (atan2,, (_Mdouble_ __y, _Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:60:1: error: '__CONCAT' cannot be used as a function 60 | __MATHCALL (atan2,, (_Mdouble_ __y, _Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:60:1: error: expected primary-expression before ')' token 60 | __MATHCALL (atan2,, (_Mdouble_ __y, _Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:63:1: error: redefinition of 'double __CONCAT' 63 | __MATHCALL (cos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:63:1: error: 'cos' was not declared in this scope; did you mean 'const'? 63 | __MATHCALL (cos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:63:1: error: expected primary-expression before ')' token 63 | __MATHCALL (cos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:63:1: error: redefinition of 'double __CONCAT' 63 | __MATHCALL (cos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:63:1: error: '__' was not declared in this scope 63 | __MATHCALL (cos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:63:1: error: 'cos' was not declared in this scope; did you mean 'const'? 63 | __MATHCALL (cos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:63:1: error: '__CONCAT' cannot be used as a function 63 | __MATHCALL (cos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:63:1: error: expected primary-expression before ')' token 63 | __MATHCALL (cos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:65:1: error: redefinition of 'double __CONCAT' 65 | __MATHCALL (sin,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:65:1: error: 'sin' was not declared in this scope 65 | __MATHCALL (sin,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:65:1: error: expected primary-expression before ')' token 65 | __MATHCALL (sin,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:65:1: error: redefinition of 'double __CONCAT' 65 | __MATHCALL (sin,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:65:1: error: '__' was not declared in this scope 65 | __MATHCALL (sin,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:65:1: error: 'sin' was not declared in this scope 65 | __MATHCALL (sin,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:65:1: error: '__CONCAT' cannot be used as a function 65 | __MATHCALL (sin,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:65:1: error: expected primary-expression before ')' token 65 | __MATHCALL (sin,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:67:1: error: redefinition of 'double __CONCAT' 67 | __MATHCALL (tan,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:67:1: error: 'tan' was not declared in this scope 67 | __MATHCALL (tan,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:67:1: error: expected primary-expression before ')' token 67 | __MATHCALL (tan,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:67:1: error: redefinition of 'double __CONCAT' 67 | __MATHCALL (tan,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:67:1: error: '__' was not declared in this scope 67 | __MATHCALL (tan,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:67:1: error: 'tan' was not declared in this scope 67 | __MATHCALL (tan,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:67:1: error: '__CONCAT' cannot be used as a function 67 | __MATHCALL (tan,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:67:1: error: expected primary-expression before ')' token 67 | __MATHCALL (tan,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:72:1: error: redefinition of 'double __CONCAT' 72 | __MATHCALL (cosh,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:72:1: error: 'cosh' was not declared in this scope 72 | __MATHCALL (cosh,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:72:1: error: expected primary-expression before ')' token 72 | __MATHCALL (cosh,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:72:1: error: redefinition of 'double __CONCAT' 72 | __MATHCALL (cosh,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:72:1: error: '__' was not declared in this scope 72 | __MATHCALL (cosh,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:72:1: error: 'cosh' was not declared in this scope 72 | __MATHCALL (cosh,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:72:1: error: '__CONCAT' cannot be used as a function 72 | __MATHCALL (cosh,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:72:1: error: expected primary-expression before ')' token 72 | __MATHCALL (cosh,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:74:1: error: redefinition of 'double __CONCAT' 74 | __MATHCALL (sinh,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:74:1: error: 'sinh' was not declared in this scope 74 | __MATHCALL (sinh,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:74:1: error: expected primary-expression before ')' token 74 | __MATHCALL (sinh,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:74:1: error: redefinition of 'double __CONCAT' 74 | __MATHCALL (sinh,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:74:1: error: '__' was not declared in this scope 74 | __MATHCALL (sinh,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:74:1: error: 'sinh' was not declared in this scope 74 | __MATHCALL (sinh,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:74:1: error: '__CONCAT' cannot be used as a function 74 | __MATHCALL (sinh,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:74:1: error: expected primary-expression before ')' token 74 | __MATHCALL (sinh,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:76:1: error: redefinition of 'double __CONCAT' 76 | __MATHCALL (tanh,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:76:1: error: 'tanh' was not declared in this scope 76 | __MATHCALL (tanh,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:76:1: error: expected primary-expression before ')' token 76 | __MATHCALL (tanh,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:76:1: error: redefinition of 'double __CONCAT' 76 | __MATHCALL (tanh,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:76:1: error: '__' was not declared in this scope 76 | __MATHCALL (tanh,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:76:1: error: 'tanh' was not declared in this scope 76 | __MATHCALL (tanh,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:76:1: error: '__CONCAT' cannot be used as a function 76 | __MATHCALL (tanh,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:76:1: error: expected primary-expression before ')' token 76 | __MATHCALL (tanh,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:77:1: error: '__END_NAMESPACE_STD' does not name a type 77 | _Mdouble_END_NAMESPACE | ^~~~~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:100:1: error: redefinition of 'double __CONCAT' 100 | __MATHCALL (exp,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:100:1: error: '__' was not declared in this scope 100 | __MATHCALL (exp,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:100:1: error: 'exp' was not declared in this scope 100 | __MATHCALL (exp,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:100:1: error: '__CONCAT' cannot be used as a function 100 | __MATHCALL (exp,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:100:1: error: expected primary-expression before ')' token 100 | __MATHCALL (exp,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:103:1: error: redefinition of 'double __CONCAT' 103 | __MATHCALL (frexp,, (_Mdouble_ __x, int *__exponent)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:103:1: error: 'frexp' was not declared in this scope 103 | __MATHCALL (frexp,, (_Mdouble_ __x, int *__exponent)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:103:1: error: expected primary-expression before ')' token 103 | __MATHCALL (frexp,, (_Mdouble_ __x, int *__exponent)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:103:1: error: redefinition of 'double __CONCAT' 103 | __MATHCALL (frexp,, (_Mdouble_ __x, int *__exponent)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:103:1: error: '__' was not declared in this scope 103 | __MATHCALL (frexp,, (_Mdouble_ __x, int *__exponent)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:103:1: error: 'frexp' was not declared in this scope 103 | __MATHCALL (frexp,, (_Mdouble_ __x, int *__exponent)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:103:1: error: '__CONCAT' cannot be used as a function 103 | __MATHCALL (frexp,, (_Mdouble_ __x, int *__exponent)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:103:1: error: expected primary-expression before ')' token 103 | __MATHCALL (frexp,, (_Mdouble_ __x, int *__exponent)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:106:1: error: redefinition of 'double __CONCAT' 106 | __MATHCALL (ldexp,, (_Mdouble_ __x, int __exponent)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:106:1: error: 'ldexp' was not declared in this scope 106 | __MATHCALL (ldexp,, (_Mdouble_ __x, int __exponent)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:106:1: error: expected primary-expression before ')' token 106 | __MATHCALL (ldexp,, (_Mdouble_ __x, int __exponent)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:106:1: error: redefinition of 'double __CONCAT' 106 | __MATHCALL (ldexp,, (_Mdouble_ __x, int __exponent)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:106:1: error: '__' was not declared in this scope 106 | __MATHCALL (ldexp,, (_Mdouble_ __x, int __exponent)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:106:1: error: 'ldexp' was not declared in this scope 106 | __MATHCALL (ldexp,, (_Mdouble_ __x, int __exponent)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:106:1: error: '__CONCAT' cannot be used as a function 106 | __MATHCALL (ldexp,, (_Mdouble_ __x, int __exponent)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:106:1: error: expected primary-expression before ')' token 106 | __MATHCALL (ldexp,, (_Mdouble_ __x, int __exponent)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:109:1: error: redefinition of 'double __CONCAT' 109 | __MATHCALL (log,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:109:1: error: 'log' was not declared in this scope; did you mean 'long'? 109 | __MATHCALL (log,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:109:1: error: expected primary-expression before ')' token 109 | __MATHCALL (log,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:109:1: error: redefinition of 'double __CONCAT' 109 | __MATHCALL (log,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:109:1: error: '__' was not declared in this scope 109 | __MATHCALL (log,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:109:1: error: 'log' was not declared in this scope; did you mean 'long'? 109 | __MATHCALL (log,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:109:1: error: '__CONCAT' cannot be used as a function 109 | __MATHCALL (log,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:109:1: error: expected primary-expression before ')' token 109 | __MATHCALL (log,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:112:1: error: redefinition of 'double __CONCAT' 112 | __MATHCALL (log10,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:112:1: error: 'log10' was not declared in this scope 112 | __MATHCALL (log10,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:112:1: error: expected primary-expression before ')' token 112 | __MATHCALL (log10,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:112:1: error: redefinition of 'double __CONCAT' 112 | __MATHCALL (log10,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:112:1: error: '__' was not declared in this scope 112 | __MATHCALL (log10,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:112:1: error: 'log10' was not declared in this scope 112 | __MATHCALL (log10,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:112:1: error: '__CONCAT' cannot be used as a function 112 | __MATHCALL (log10,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:112:1: error: expected primary-expression before ')' token 112 | __MATHCALL (log10,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:115:1: error: redefinition of 'double __CONCAT' 115 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:115:1: error: 'modf' was not declared in this scope 115 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:115:1: error: expected primary-expression before ')' token 115 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:115:1: error: redefinition of 'double __CONCAT' 115 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:115:1: error: '__' was not declared in this scope 115 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:115:1: error: 'modf' was not declared in this scope 115 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:115:1: error: '__CONCAT' cannot be used as a function 115 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:115:1: error: expected primary-expression before ')' token 115 | __MATHCALL (modf,, (_Mdouble_ __x, _Mdouble_ *__iptr)) | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:117:1: error: '__END_NAMESPACE_STD' does not name a type 117 | _Mdouble_END_NAMESPACE | ^~~~~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:154:1: error: redefinition of 'double __CONCAT' 154 | __MATHCALL (pow,, (_Mdouble_ __x, _Mdouble_ __y)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:154:1: error: '__' was not declared in this scope 154 | __MATHCALL (pow,, (_Mdouble_ __x, _Mdouble_ __y)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:154:1: error: 'pow' was not declared in this scope; did you mean 'pow1p'? 154 | __MATHCALL (pow,, (_Mdouble_ __x, _Mdouble_ __y)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:154:1: error: '__CONCAT' cannot be used as a function 154 | __MATHCALL (pow,, (_Mdouble_ __x, _Mdouble_ __y)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:154:1: error: expected primary-expression before ')' token 154 | __MATHCALL (pow,, (_Mdouble_ __x, _Mdouble_ __y)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:157:1: error: redefinition of 'double __CONCAT' 157 | __MATHCALL (sqrt,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:157:1: error: 'sqrt' was not declared in this scope 157 | __MATHCALL (sqrt,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:157:1: error: expected primary-expression before ')' token 157 | __MATHCALL (sqrt,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:157:1: error: redefinition of 'double __CONCAT' 157 | __MATHCALL (sqrt,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:157:1: error: '__' was not declared in this scope 157 | __MATHCALL (sqrt,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:157:1: error: 'sqrt' was not declared in this scope 157 | __MATHCALL (sqrt,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:157:1: error: '__CONCAT' cannot be used as a function 157 | __MATHCALL (sqrt,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:157:1: error: expected primary-expression before ')' token 157 | __MATHCALL (sqrt,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:158:1: error: '__END_NAMESPACE_STD' does not name a type 158 | _Mdouble_END_NAMESPACE | ^~~~~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:179:1: error: redefinition of 'double __CONCAT' 179 | __MATHCALLX (ceil,, (_Mdouble_ __x), (__const__)); | ^~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:179:1: error: '__' was not declared in this scope 179 | __MATHCALLX (ceil,, (_Mdouble_ __x), (__const__)); | ^~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:179:1: error: 'ceil' was not declared in this scope 179 | __MATHCALLX (ceil,, (_Mdouble_ __x), (__const__)); | ^~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:179:1: error: '__CONCAT' cannot be used as a function 179 | __MATHCALLX (ceil,, (_Mdouble_ __x), (__const__)); | ^~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:179:1: error: expected primary-expression before ')' token 179 | __MATHCALLX (ceil,, (_Mdouble_ __x), (__const__)); | ^~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:182:1: error: redefinition of 'double __CONCAT' 182 | __MATHCALLX (fabs,, (_Mdouble_ __x), (__const__)); | ^~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:182:1: error: 'fabs' was not declared in this scope 182 | __MATHCALLX (fabs,, (_Mdouble_ __x), (__const__)); | ^~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:182:1: error: expected primary-expression before ')' token 182 | __MATHCALLX (fabs,, (_Mdouble_ __x), (__const__)); | ^~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:182:1: error: redefinition of 'double __CONCAT' 182 | __MATHCALLX (fabs,, (_Mdouble_ __x), (__const__)); | ^~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:182:1: error: '__' was not declared in this scope 182 | __MATHCALLX (fabs,, (_Mdouble_ __x), (__const__)); | ^~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:182:1: error: 'fabs' was not declared in this scope 182 | __MATHCALLX (fabs,, (_Mdouble_ __x), (__const__)); | ^~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:182:1: error: '__CONCAT' cannot be used as a function 182 | __MATHCALLX (fabs,, (_Mdouble_ __x), (__const__)); | ^~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:182:1: error: expected primary-expression before ')' token 182 | __MATHCALLX (fabs,, (_Mdouble_ __x), (__const__)); | ^~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:185:1: error: redefinition of 'double __CONCAT' 185 | __MATHCALLX (floor,, (_Mdouble_ __x), (__const__)); | ^~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:185:1: error: 'floor' was not declared in this scope 185 | __MATHCALLX (floor,, (_Mdouble_ __x), (__const__)); | ^~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:185:1: error: expected primary-expression before ')' token 185 | __MATHCALLX (floor,, (_Mdouble_ __x), (__const__)); | ^~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:185:1: error: redefinition of 'double __CONCAT' 185 | __MATHCALLX (floor,, (_Mdouble_ __x), (__const__)); | ^~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:185:1: error: '__' was not declared in this scope 185 | __MATHCALLX (floor,, (_Mdouble_ __x), (__const__)); | ^~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:185:1: error: 'floor' was not declared in this scope 185 | __MATHCALLX (floor,, (_Mdouble_ __x), (__const__)); | ^~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:185:1: error: '__CONCAT' cannot be used as a function 185 | __MATHCALLX (floor,, (_Mdouble_ __x), (__const__)); | ^~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:185:1: error: expected primary-expression before ')' token 185 | __MATHCALLX (floor,, (_Mdouble_ __x), (__const__)); | ^~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:188:1: error: redefinition of 'double __CONCAT' 188 | __MATHCALL (fmod,, (_Mdouble_ __x, _Mdouble_ __y)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:188:1: error: 'fmod' was not declared in this scope 188 | __MATHCALL (fmod,, (_Mdouble_ __x, _Mdouble_ __y)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:188:1: error: expected primary-expression before ')' token 188 | __MATHCALL (fmod,, (_Mdouble_ __x, _Mdouble_ __y)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:188:1: error: redefinition of 'double __CONCAT' 188 | __MATHCALL (fmod,, (_Mdouble_ __x, _Mdouble_ __y)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: 'double __CONCAT' previously defined here 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:188:1: error: '__' was not declared in this scope 188 | __MATHCALL (fmod,, (_Mdouble_ __x, _Mdouble_ __y)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:188:1: error: 'fmod' was not declared in this scope 188 | __MATHCALL (fmod,, (_Mdouble_ __x, _Mdouble_ __y)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:188:1: error: '__CONCAT' cannot be used as a function 188 | __MATHCALL (fmod,, (_Mdouble_ __x, _Mdouble_ __y)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:188:1: error: expected primary-expression before ')' token 188 | __MATHCALL (fmod,, (_Mdouble_ __x, _Mdouble_ __y)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:193:1: error: conflicting declaration 'int __CONCAT' 193 | __MATHDECL_1 (int,__isinf,, (_Mdouble_ __value)) __attribute__ ((__const__)); | ^~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: previous declaration as 'double __CONCAT' 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:193:1: error: '__isinf' was not declared in this scope 193 | __MATHDECL_1 (int,__isinf,, (_Mdouble_ __value)) __attribute__ ((__const__)); | ^~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:193:1: error: expected primary-expression before ')' token 193 | __MATHDECL_1 (int,__isinf,, (_Mdouble_ __value)) __attribute__ ((__const__)); | ^~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:196:1: error: conflicting declaration 'int __CONCAT' 196 | __MATHDECL_1 (int,__finite,, (_Mdouble_ __value)) __attribute__ ((__const__)); | ^~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:54:1: note: previous declaration as 'double __CONCAT' 54 | __MATHCALL (acos,, (_Mdouble_ __x)); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:196:1: error: '__finite' was not declared in this scope 196 | __MATHDECL_1 (int,__finite,, (_Mdouble_ __value)) __attribute__ ((__const__)); | ^~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:196:1: error: expected primary-expression before ')' token 196 | __MATHDECL_1 (int,__finite,, (_Mdouble_ __value)) __attribute__ ((__const__)); | ^~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/mathcalls.h:197:1: error: '__END_NAMESPACE_STD' does not name a type 197 | _Mdouble_END_NAMESPACE | ^~~~~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/math.h:475:1: error: '__END_DECLS' does not name a type 475 | __END_DECLS | ^~~~~~~~~~~ In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/std_abs.h:38, from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:49: /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:34:1: error: '__BEGIN_DECLS' does not name a type 34 | __BEGIN_DECLS | ^~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:101:5: error: 'div_t' does not name a type 101 | } div_t; | ^~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:112:1: error: '__END_NAMESPACE_STD' does not name a type 112 | __END_NAMESPACE_STD | ^~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:142:1: error: '__BEGIN_NAMESPACE_STD' does not name a type 142 | __BEGIN_NAMESPACE_STD | ^~~~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:148:6: error: expected initializer before '__THROW' 148 | __THROW __attribute_pure__ __nonnull ((1)) __wur; | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:151:6: error: expected initializer before '__THROW' 151 | __THROW __attribute_pure__ __nonnull ((1)) __wur; | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:152:1: error: '__END_NAMESPACE_STD' does not name a type 152 | __END_NAMESPACE_STD | ^~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:167:1: error: '__END_NAMESPACE_STD' does not name a type 167 | __END_NAMESPACE_STD | ^~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:189:6: error: expected initializer before '__THROW' 189 | __THROW __nonnull ((1)); | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:190:1: error: '__END_NAMESPACE_STD' does not name a type 190 | __END_NAMESPACE_STD | ^~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:376:41: error: expected initializer before '__THROW' 376 | extern void srand (unsigned int __seed) __THROW; | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:377:1: error: '__END_NAMESPACE_STD' does not name a type 377 | __END_NAMESPACE_STD | ^~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:467:22: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 467 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:467:38: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 467 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:467:51: error: expression list treated as compound expression in initializer [-fpermissive] 467 | extern void *calloc (size_t __nmemb, size_t __size) | ^ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:469:1: error: '__END_NAMESPACE_STD' does not name a type 469 | __END_NAMESPACE_STD | ^~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:482:32: error: expected initializer before '__THROW' 482 | extern void free (void *__ptr) __THROW; | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:483:1: error: '__END_NAMESPACE_STD' does not name a type 483 | __END_NAMESPACE_STD | ^~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:518:43: error: expected initializer before '__THROW' 518 | extern int atexit (void (*__func) (void)) __THROW __nonnull ((1)); | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:529:1: error: '__END_NAMESPACE_STD' does not name a type 529 | __END_NAMESPACE_STD | ^~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:550:1: error: '__END_NAMESPACE_STD' does not name a type 550 | __END_NAMESPACE_STD | ^~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:564:1: error: '__END_NAMESPACE_STD' does not name a type 564 | __END_NAMESPACE_STD | ^~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:717:1: error: '__END_NAMESPACE_STD' does not name a type 717 | __END_NAMESPACE_STD | ^~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:751:1: error: '__BEGIN_NAMESPACE_STD' does not name a type 751 | __BEGIN_NAMESPACE_STD | ^~~~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:760:34: error: 'size_t' has not been declared 760 | extern void qsort (void *__base, size_t __nmemb, size_t __size, | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:760:50: error: 'size_t' has not been declared 760 | extern void qsort (void *__base, size_t __nmemb, size_t __size, | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:761:20: error: '__compar_fn_t' has not been declared 761 | __compar_fn_t __compar) __nonnull ((1, 4)); | ^~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:761:44: error: expected initializer before '__nonnull' 761 | __compar_fn_t __compar) __nonnull ((1, 4)); | ^~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:770:26: error: expected initializer before '__THROW' 770 | extern int abs (int __x) __THROW __attribute__ ((__const__)) __wur; | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:771:37: error: expected initializer before '__THROW' 771 | extern long int labs (long int __x) __THROW __attribute__ ((__const__)) __wur; | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:772:1: error: '__END_NAMESPACE_STD' does not name a type 772 | __END_NAMESPACE_STD | ^~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:787:6: error: expected initializer before '__THROW' 787 | __THROW __attribute__ ((__const__)) __wur; | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:788:1: error: '__END_NAMESPACE_STD' does not name a type 788 | __END_NAMESPACE_STD | ^~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:863:48: error: 'size_t' has not been declared 863 | const char *__restrict __s, size_t __n) __THROW __wur; | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:863:60: error: expected initializer before '__THROW' 863 | const char *__restrict __s, size_t __n) __THROW __wur; | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:866:48: error: expected initializer before '__THROW' 866 | extern int wctomb (char *__s, wchar_t __wchar) __THROW __wur; | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:870:8: error: 'size_t' does not name a type 870 | extern size_t mbstowcs (wchar_t *__restrict __pwcs, | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:33:1: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' 32 | #include +++ |+#include 33 | /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:873:8: error: 'size_t' does not name a type 873 | extern size_t wcstombs (char *__restrict __s, | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:873:8: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdlib.h:876:1: error: '__END_NAMESPACE_STD' does not name a type 876 | __END_NAMESPACE_STD | ^~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:89:11: error: 'acos' has not been declared in '::' 89 | using ::acos; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:108:11: error: 'asin' has not been declared in '::' 108 | using ::asin; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:127:11: error: 'atan' has not been declared in '::' 127 | using ::atan; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:146:11: error: 'atan2' has not been declared in '::' 146 | using ::atan2; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:158:11: error: 'ceil' has not been declared in '::' 158 | using ::ceil; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:177:11: error: 'cos' has not been declared in '::' 177 | using ::cos; | ^~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:196:11: error: 'cosh' has not been declared in '::' 196 | using ::cosh; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:215:11: error: 'exp' has not been declared in '::' 215 | using ::exp; | ^~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:234:11: error: 'fabs' has not been declared in '::' 234 | using ::fabs; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:253:11: error: 'floor' has not been declared in '::' 253 | using ::floor; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:272:11: error: 'fmod' has not been declared in '::' 272 | using ::fmod; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:284:11: error: 'frexp' has not been declared in '::' 284 | using ::frexp; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:303:11: error: 'ldexp' has not been declared in '::' 303 | using ::ldexp; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:322:11: error: 'log' has not been declared in '::' 322 | using ::log; | ^~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:341:11: error: 'log10' has not been declared in '::' 341 | using ::log10; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:360:11: error: 'modf' has not been declared in '::' 360 | using ::modf; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:372:11: error: 'pow' has not been declared in '::' 372 | using ::pow; | ^~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:400:11: error: 'sin' has not been declared in '::' 400 | using ::sin; | ^~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:419:11: error: 'sinh' has not been declared in '::' 419 | using ::sinh; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:438:11: error: 'sqrt' has not been declared in '::' 438 | using ::sqrt; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:457:11: error: 'tan' has not been declared in '::' 457 | using ::tan; | ^~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:476:11: error: 'tanh' has not been declared in '::' 476 | using ::tanh; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath: In function 'constexpr int std::fpclassify(float)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1102:33: error: 'FP_NAN' was not declared in this scope; did you mean 'ML_NAN'? 1102 | { return __builtin_fpclassify(FP_NAN, FP_INFINITE, FP_NORMAL, | ^~~~~~ | ML_NAN /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1102:41: error: 'FP_INFINITE' was not declared in this scope; did you mean 'R_FINITE'? 1102 | { return __builtin_fpclassify(FP_NAN, FP_INFINITE, FP_NORMAL, | ^~~~~~~~~~~ | R_FINITE /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1102:54: error: 'FP_NORMAL' was not declared in this scope 1102 | { return __builtin_fpclassify(FP_NAN, FP_INFINITE, FP_NORMAL, | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1103:33: error: 'FP_SUBNORMAL' was not declared in this scope 1103 | FP_SUBNORMAL, FP_ZERO, __x); } | ^~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1103:47: error: 'FP_ZERO' was not declared in this scope 1103 | FP_SUBNORMAL, FP_ZERO, __x); } | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1103:62: error: body of 'constexpr' function 'constexpr int std::fpclassify(float)' not a return-statement 1103 | FP_SUBNORMAL, FP_ZERO, __x); } | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath: In function 'constexpr int std::fpclassify(double)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1107:33: error: 'FP_NAN' was not declared in this scope; did you mean 'ML_NAN'? 1107 | { return __builtin_fpclassify(FP_NAN, FP_INFINITE, FP_NORMAL, | ^~~~~~ | ML_NAN /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1107:41: error: 'FP_INFINITE' was not declared in this scope; did you mean 'R_FINITE'? 1107 | { return __builtin_fpclassify(FP_NAN, FP_INFINITE, FP_NORMAL, | ^~~~~~~~~~~ | R_FINITE /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1107:54: error: 'FP_NORMAL' was not declared in this scope 1107 | { return __builtin_fpclassify(FP_NAN, FP_INFINITE, FP_NORMAL, | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1108:33: error: 'FP_SUBNORMAL' was not declared in this scope 1108 | FP_SUBNORMAL, FP_ZERO, __x); } | ^~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1108:47: error: 'FP_ZERO' was not declared in this scope 1108 | FP_SUBNORMAL, FP_ZERO, __x); } | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1108:62: error: body of 'constexpr' function 'constexpr int std::fpclassify(double)' not a return-statement 1108 | FP_SUBNORMAL, FP_ZERO, __x); } | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath: In function 'constexpr int std::fpclassify(long double)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1112:33: error: 'FP_NAN' was not declared in this scope; did you mean 'ML_NAN'? 1112 | { return __builtin_fpclassify(FP_NAN, FP_INFINITE, FP_NORMAL, | ^~~~~~ | ML_NAN /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1112:41: error: 'FP_INFINITE' was not declared in this scope; did you mean 'R_FINITE'? 1112 | { return __builtin_fpclassify(FP_NAN, FP_INFINITE, FP_NORMAL, | ^~~~~~~~~~~ | R_FINITE /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1112:54: error: 'FP_NORMAL' was not declared in this scope 1112 | { return __builtin_fpclassify(FP_NAN, FP_INFINITE, FP_NORMAL, | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1113:33: error: 'FP_SUBNORMAL' was not declared in this scope 1113 | FP_SUBNORMAL, FP_ZERO, __x); } | ^~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1113:47: error: 'FP_ZERO' was not declared in this scope 1113 | FP_SUBNORMAL, FP_ZERO, __x); } | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1113:62: error: body of 'constexpr' function 'constexpr int std::fpclassify(long double)' not a return-statement 1113 | FP_SUBNORMAL, FP_ZERO, __x); } | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath: In function 'constexpr typename __gnu_cxx::__enable_if::__value, int>::__type std::fpclassify(_Tp)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1121:25: error: 'FP_NORMAL' was not declared in this scope 1121 | { return __x != 0 ? FP_NORMAL : FP_ZERO; } | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1121:37: error: 'FP_ZERO' was not declared in this scope 1121 | { return __x != 0 ? FP_NORMAL : FP_ZERO; } | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath: At global scope: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1820:11: error: 'acosf' has not been declared in '::' 1820 | using ::acosf; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1823:11: error: 'acosl' has not been declared in '::' 1823 | using ::acosl; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1827:11: error: 'asinf' has not been declared in '::' 1827 | using ::asinf; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1830:11: error: 'asinl' has not been declared in '::' 1830 | using ::asinl; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1834:11: error: 'atanf' has not been declared in '::' 1834 | using ::atanf; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1837:11: error: 'atanl' has not been declared in '::' 1837 | using ::atanl; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1841:11: error: 'atan2f' has not been declared in '::' 1841 | using ::atan2f; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1844:11: error: 'atan2l' has not been declared in '::' 1844 | using ::atan2l; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1848:11: error: 'ceilf' has not been declared in '::' 1848 | using ::ceilf; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1851:11: error: 'ceill' has not been declared in '::' 1851 | using ::ceill; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1855:11: error: 'cosf' has not been declared in '::' 1855 | using ::cosf; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1858:11: error: 'cosl' has not been declared in '::' 1858 | using ::cosl; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1862:11: error: 'coshf' has not been declared in '::' 1862 | using ::coshf; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1865:11: error: 'coshl' has not been declared in '::' 1865 | using ::coshl; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1869:11: error: 'expf' has not been declared in '::' 1869 | using ::expf; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1872:11: error: 'expl' has not been declared in '::' 1872 | using ::expl; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1876:11: error: 'fabsf' has not been declared in '::' 1876 | using ::fabsf; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1879:11: error: 'fabsl' has not been declared in '::' 1879 | using ::fabsl; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1883:11: error: 'floorf' has not been declared in '::' 1883 | using ::floorf; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1886:11: error: 'floorl' has not been declared in '::' 1886 | using ::floorl; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1890:11: error: 'fmodf' has not been declared in '::' 1890 | using ::fmodf; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1893:11: error: 'fmodl' has not been declared in '::' 1893 | using ::fmodl; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1897:11: error: 'frexpf' has not been declared in '::' 1897 | using ::frexpf; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1900:11: error: 'frexpl' has not been declared in '::' 1900 | using ::frexpl; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1904:11: error: 'ldexpf' has not been declared in '::' 1904 | using ::ldexpf; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1907:11: error: 'ldexpl' has not been declared in '::' 1907 | using ::ldexpl; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1911:11: error: 'logf' has not been declared in '::' 1911 | using ::logf; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1914:11: error: 'logl' has not been declared in '::' 1914 | using ::logl; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1918:11: error: 'log10f' has not been declared in '::' 1918 | using ::log10f; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1921:11: error: 'log10l' has not been declared in '::' 1921 | using ::log10l; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1925:11: error: 'modff' has not been declared in '::' 1925 | using ::modff; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1928:11: error: 'modfl' has not been declared in '::' 1928 | using ::modfl; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1932:11: error: 'powf' has not been declared in '::' 1932 | using ::powf; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1935:11: error: 'powl' has not been declared in '::' 1935 | using ::powl; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1939:11: error: 'sinf' has not been declared in '::' 1939 | using ::sinf; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1942:11: error: 'sinl' has not been declared in '::' 1942 | using ::sinl; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1946:11: error: 'sinhf' has not been declared in '::' 1946 | using ::sinhf; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1949:11: error: 'sinhl' has not been declared in '::' 1949 | using ::sinhl; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1953:11: error: 'sqrtf' has not been declared in '::' 1953 | using ::sqrtf; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1956:11: error: 'sqrtl' has not been declared in '::' 1956 | using ::sqrtl; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1960:11: error: 'tanf' has not been declared in '::' 1960 | using ::tanf; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1963:11: error: 'tanl' has not been declared in '::' 1963 | using ::tanl; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1967:11: error: 'tanhf' has not been declared in '::' 1967 | using ::tanhf; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1970:11: error: 'tanhl' has not been declared in '::' 1970 | using ::tanhl; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2085:11: error: 'double_t' has not been declared in '::' 2085 | using ::double_t; | ^~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2086:11: error: 'float_t' has not been declared in '::' 2086 | using ::float_t; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2090:11: error: 'acosh' has not been declared in '::' 2090 | using ::acosh; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2091:11: error: 'acoshf' has not been declared in '::' 2091 | using ::acoshf; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2092:11: error: 'acoshl' has not been declared in '::' 2092 | using ::acoshl; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2094:11: error: 'asinh' has not been declared in '::' 2094 | using ::asinh; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2095:11: error: 'asinhf' has not been declared in '::' 2095 | using ::asinhf; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2096:11: error: 'asinhl' has not been declared in '::' 2096 | using ::asinhl; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2098:11: error: 'atanh' has not been declared in '::' 2098 | using ::atanh; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2099:11: error: 'atanhf' has not been declared in '::' 2099 | using ::atanhf; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2100:11: error: 'atanhl' has not been declared in '::' 2100 | using ::atanhl; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2102:11: error: 'cbrt' has not been declared in '::' 2102 | using ::cbrt; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2103:11: error: 'cbrtf' has not been declared in '::' 2103 | using ::cbrtf; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2104:11: error: 'cbrtl' has not been declared in '::' 2104 | using ::cbrtl; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2106:11: error: 'copysign' has not been declared in '::' 2106 | using ::copysign; | ^~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2107:11: error: 'copysignf' has not been declared in '::' 2107 | using ::copysignf; | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2108:11: error: 'copysignl' has not been declared in '::' 2108 | using ::copysignl; | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2110:11: error: 'erf' has not been declared in '::' 2110 | using ::erf; | ^~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2111:11: error: 'erff' has not been declared in '::' 2111 | using ::erff; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2112:11: error: 'erfl' has not been declared in '::' 2112 | using ::erfl; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2114:11: error: 'erfc' has not been declared in '::' 2114 | using ::erfc; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2115:11: error: 'erfcf' has not been declared in '::' 2115 | using ::erfcf; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2116:11: error: 'erfcl' has not been declared in '::' 2116 | using ::erfcl; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2118:11: error: 'exp2' has not been declared in '::' 2118 | using ::exp2; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2119:11: error: 'exp2f' has not been declared in '::' 2119 | using ::exp2f; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2120:11: error: 'exp2l' has not been declared in '::' 2120 | using ::exp2l; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2122:11: error: 'expm1' has not been declared in '::' 2122 | using ::expm1; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2123:11: error: 'expm1f' has not been declared in '::' 2123 | using ::expm1f; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2124:11: error: 'expm1l' has not been declared in '::' 2124 | using ::expm1l; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2126:11: error: 'fdim' has not been declared in '::' 2126 | using ::fdim; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2127:11: error: 'fdimf' has not been declared in '::' 2127 | using ::fdimf; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2128:11: error: 'fdiml' has not been declared in '::' 2128 | using ::fdiml; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2130:11: error: 'fma' has not been declared in '::' 2130 | using ::fma; | ^~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2131:11: error: 'fmaf' has not been declared in '::' 2131 | using ::fmaf; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2132:11: error: 'fmal' has not been declared in '::' 2132 | using ::fmal; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2134:11: error: 'fmax' has not been declared in '::' 2134 | using ::fmax; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2135:11: error: 'fmaxf' has not been declared in '::' 2135 | using ::fmaxf; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2136:11: error: 'fmaxl' has not been declared in '::' 2136 | using ::fmaxl; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2138:11: error: 'fmin' has not been declared in '::' 2138 | using ::fmin; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2139:11: error: 'fminf' has not been declared in '::' 2139 | using ::fminf; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2140:11: error: 'fminl' has not been declared in '::' 2140 | using ::fminl; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2142:11: error: 'hypot' has not been declared in '::' 2142 | using ::hypot; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2143:11: error: 'hypotf' has not been declared in '::' 2143 | using ::hypotf; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2144:11: error: 'hypotl' has not been declared in '::' 2144 | using ::hypotl; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2146:11: error: 'ilogb' has not been declared in '::' 2146 | using ::ilogb; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2147:11: error: 'ilogbf' has not been declared in '::' 2147 | using ::ilogbf; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2148:11: error: 'ilogbl' has not been declared in '::' 2148 | using ::ilogbl; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2150:11: error: 'lgamma' has not been declared in '::' 2150 | using ::lgamma; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2151:11: error: 'lgammaf' has not been declared in '::' 2151 | using ::lgammaf; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2152:11: error: 'lgammal' has not been declared in '::' 2152 | using ::lgammal; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2155:11: error: 'llrint' has not been declared in '::' 2155 | using ::llrint; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2156:11: error: 'llrintf' has not been declared in '::' 2156 | using ::llrintf; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2157:11: error: 'llrintl' has not been declared in '::' 2157 | using ::llrintl; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2159:11: error: 'llround' has not been declared in '::' 2159 | using ::llround; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2160:11: error: 'llroundf' has not been declared in '::' 2160 | using ::llroundf; | ^~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2161:11: error: 'llroundl' has not been declared in '::' 2161 | using ::llroundl; | ^~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2164:11: error: 'log1p' has not been declared in '::' 2164 | using ::log1p; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2165:11: error: 'log1pf' has not been declared in '::' 2165 | using ::log1pf; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2166:11: error: 'log1pl' has not been declared in '::' 2166 | using ::log1pl; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2168:11: error: 'log2' has not been declared in '::' 2168 | using ::log2; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2169:11: error: 'log2f' has not been declared in '::' 2169 | using ::log2f; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2170:11: error: 'log2l' has not been declared in '::' 2170 | using ::log2l; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2172:11: error: 'logb' has not been declared in '::' 2172 | using ::logb; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2173:11: error: 'logbf' has not been declared in '::' 2173 | using ::logbf; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2174:11: error: 'logbl' has not been declared in '::' 2174 | using ::logbl; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2176:11: error: 'lrint' has not been declared in '::' 2176 | using ::lrint; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2177:11: error: 'lrintf' has not been declared in '::' 2177 | using ::lrintf; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2178:11: error: 'lrintl' has not been declared in '::' 2178 | using ::lrintl; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2180:11: error: 'lround' has not been declared in '::' 2180 | using ::lround; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2181:11: error: 'lroundf' has not been declared in '::' 2181 | using ::lroundf; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2182:11: error: 'lroundl' has not been declared in '::' 2182 | using ::lroundl; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2184:11: error: 'nan' has not been declared in '::' 2184 | using ::nan; | ^~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2185:11: error: 'nanf' has not been declared in '::' 2185 | using ::nanf; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2186:11: error: 'nanl' has not been declared in '::' 2186 | using ::nanl; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2188:11: error: 'nearbyint' has not been declared in '::' 2188 | using ::nearbyint; | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2189:11: error: 'nearbyintf' has not been declared in '::' 2189 | using ::nearbyintf; | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2190:11: error: 'nearbyintl' has not been declared in '::' 2190 | using ::nearbyintl; | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2192:11: error: 'nextafter' has not been declared in '::' 2192 | using ::nextafter; | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2193:11: error: 'nextafterf' has not been declared in '::' 2193 | using ::nextafterf; | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2194:11: error: 'nextafterl' has not been declared in '::' 2194 | using ::nextafterl; | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2196:11: error: 'nexttoward' has not been declared in '::' 2196 | using ::nexttoward; | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2197:11: error: 'nexttowardf' has not been declared in '::' 2197 | using ::nexttowardf; | ^~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2198:11: error: 'nexttowardl' has not been declared in '::' 2198 | using ::nexttowardl; | ^~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2200:11: error: 'remainder' has not been declared in '::' 2200 | using ::remainder; | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2201:11: error: 'remainderf' has not been declared in '::' 2201 | using ::remainderf; | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2202:11: error: 'remainderl' has not been declared in '::' 2202 | using ::remainderl; | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2204:11: error: 'remquo' has not been declared in '::' 2204 | using ::remquo; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2205:11: error: 'remquof' has not been declared in '::' 2205 | using ::remquof; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2206:11: error: 'remquol' has not been declared in '::' 2206 | using ::remquol; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2208:11: error: 'rint' has not been declared in '::' 2208 | using ::rint; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2209:11: error: 'rintf' has not been declared in '::' 2209 | using ::rintf; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2210:11: error: 'rintl' has not been declared in '::' 2210 | using ::rintl; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2212:11: error: 'round' has not been declared in '::' 2212 | using ::round; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2213:11: error: 'roundf' has not been declared in '::' 2213 | using ::roundf; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2214:11: error: 'roundl' has not been declared in '::' 2214 | using ::roundl; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2216:11: error: 'scalbln' has not been declared in '::' 2216 | using ::scalbln; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2217:11: error: 'scalblnf' has not been declared in '::' 2217 | using ::scalblnf; | ^~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2218:11: error: 'scalblnl' has not been declared in '::' 2218 | using ::scalblnl; | ^~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2220:11: error: 'scalbn' has not been declared in '::' 2220 | using ::scalbn; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2221:11: error: 'scalbnf' has not been declared in '::' 2221 | using ::scalbnf; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2222:11: error: 'scalbnl' has not been declared in '::' 2222 | using ::scalbnl; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2224:11: error: 'tgamma' has not been declared in '::' 2224 | using ::tgamma; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2225:11: error: 'tgammaf' has not been declared in '::' 2225 | using ::tgammaf; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2226:11: error: 'tgammal' has not been declared in '::' 2226 | using ::tgammal; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2228:11: error: 'trunc' has not been declared in '::' 2228 | using ::trunc; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2229:11: error: 'truncf' has not been declared in '::' 2229 | using ::truncf; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2230:11: error: 'truncl' has not been declared in '::' 2230 | using ::truncl; | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:104:1: error: '__BEGIN_NAMESPACE_C99' does not name a type 104 | __BEGIN_NAMESPACE_C99 | ^~~~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:107:1: error: '__END_NAMESPACE_C99' does not name a type 107 | __END_NAMESPACE_C99 | ^~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:138:1: error: '__END_NAMESPACE_STD' does not name a type 138 | __END_NAMESPACE_STD | ^~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:151:59: error: 'size_t' has not been declared 151 | const wchar_t *__restrict __src, size_t __n) | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:152:6: error: expected initializer before '__THROW' 152 | __THROW; | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:156:58: error: expected initializer before '__THROW' 156 | const wchar_t *__restrict __src) __THROW; | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:159:59: error: 'size_t' has not been declared 159 | const wchar_t *__restrict __src, size_t __n) | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:160:6: error: expected initializer before '__THROW' 160 | __THROW; | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:164:6: error: expected initializer before '__THROW' 164 | __THROW __attribute_pure__; | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:166:63: error: 'size_t' has not been declared 166 | extern int wcsncmp (const wchar_t *__s1, const wchar_t *__s2, size_t __n) | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:167:6: error: expected initializer before '__THROW' 167 | __THROW __attribute_pure__; | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:168:1: error: '__END_NAMESPACE_STD' does not name a type 168 | __END_NAMESPACE_STD | ^~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:196:8: error: 'size_t' does not name a type 196 | extern size_t wcsxfrm (wchar_t *__restrict __s1, | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:52:1: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' 51 | # include +++ |+#include 52 | /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:198:1: error: '__END_NAMESPACE_STD' does not name a type 198 | __END_NAMESPACE_STD | ^~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:238:6: error: expected initializer before '__THROW' 238 | __THROW __attribute_pure__; | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:240:1: error: '__END_NAMESPACE_STD' does not name a type 240 | __END_NAMESPACE_STD | ^~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:256:8: error: 'size_t' does not name a type 256 | extern size_t wcsspn (const wchar_t *__wcs, const wchar_t *__accept) | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:256:8: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:267:6: error: expected initializer before '__THROW' 267 | __THROW __attribute_pure__; | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:278:6: error: expected initializer before '__THROW' 278 | __THROW __attribute_pure__; | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:284:53: error: expected initializer before '__THROW' 284 | wchar_t **__restrict __ptr) __THROW; | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:287:8: error: 'size_t' does not name a type 287 | extern size_t wcslen (const wchar_t *__s) __THROW __attribute_pure__; | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:287:8: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:288:1: error: '__END_NAMESPACE_STD' does not name a type 288 | __END_NAMESPACE_STD | ^~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:325:63: error: 'size_t' has not been declared 325 | extern int wmemcmp (const wchar_t *__s1, const wchar_t *__s2, size_t __n) | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:326:6: error: expected initializer before '__THROW' 326 | __THROW __attribute_pure__; | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:330:58: error: 'size_t' has not been declared 330 | const wchar_t *__restrict __s2, size_t __n) __THROW; | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:330:70: error: expected initializer before '__THROW' 330 | const wchar_t *__restrict __s2, size_t __n) __THROW; | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:334:63: error: 'size_t' has not been declared 334 | extern wchar_t *wmemmove (wchar_t *__s1, const wchar_t *__s2, size_t __n) | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:335:6: error: expected initializer before '__THROW' 335 | __THROW; | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:338:53: error: 'size_t' has not been declared 338 | extern wchar_t *wmemset (wchar_t *__s, wchar_t __c, size_t __n) __THROW; | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:338:65: error: expected initializer before '__THROW' 338 | extern wchar_t *wmemset (wchar_t *__s, wchar_t __c, size_t __n) __THROW; | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:339:1: error: '__END_NAMESPACE_STD' does not name a type 339 | __END_NAMESPACE_STD | ^~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:357:31: error: expected initializer before '__THROW' 357 | extern int wctob (wint_t __c) __THROW; | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:361:27: error: 'mbstate_t' does not name a type 361 | extern int mbsinit (const mbstate_t *__ps) __THROW __attribute_pure__; | ^~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:361:44: error: expected initializer before '__THROW' 361 | extern int mbsinit (const mbstate_t *__ps) __THROW __attribute_pure__; | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:365:8: error: 'size_t' does not name a type 365 | extern size_t mbrtowc (wchar_t *__restrict __pwc, | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:365:8: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:370:8: error: 'size_t' does not name a type 370 | extern size_t wcrtomb (char *__restrict __s, wchar_t __wc, | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:370:8: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:374:8: error: 'size_t' does not name a type 374 | extern size_t __mbrlen (const char *__restrict __s, size_t __n, | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:374:8: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:376:8: error: 'size_t' does not name a type 376 | extern size_t mbrlen (const char *__restrict __s, size_t __n, | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:376:8: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:378:1: error: '__END_NAMESPACE_STD' does not name a type 378 | __END_NAMESPACE_STD | ^~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:414:8: error: 'size_t' does not name a type 414 | extern size_t wcsrtombs (char *__restrict __dst, | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:414:8: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:417:1: error: '__END_NAMESPACE_STD' does not name a type 417 | __END_NAMESPACE_STD | ^~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:452:1: error: '__END_NAMESPACE_STD' does not name a type 452 | __END_NAMESPACE_STD | ^~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:475:6: error: expected initializer before '__THROW' 475 | __THROW; | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:476:1: error: '__END_NAMESPACE_STD' does not name a type 476 | __END_NAMESPACE_STD | ^~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:790:1: error: '__END_NAMESPACE_STD' does not name a type 790 | __END_NAMESPACE_STD | ^~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/wchar.h:858:1: error: '__END_NAMESPACE_C99' does not name a type 858 | __END_NAMESPACE_C99 | ^~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:143:11: error: 'btowc' has not been declared in '::' 143 | using ::btowc; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:144:11: error: 'fgetwc' has not been declared in '::' 144 | using ::fgetwc; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:148:11: error: 'fwide' has not been declared in '::' 148 | using ::fwide; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:149:11: error: 'fwprintf' has not been declared in '::' 149 | using ::fwprintf; | ^~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:150:11: error: 'fwscanf' has not been declared in '::' 150 | using ::fwscanf; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:153:11: error: 'mbrlen' has not been declared in '::' 153 | using ::mbrlen; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:154:11: error: 'mbrtowc' has not been declared in '::' 154 | using ::mbrtowc; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:155:11: error: 'mbsinit' has not been declared in '::' 155 | using ::mbsinit; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:156:11: error: 'mbsrtowcs' has not been declared in '::' 156 | using ::mbsrtowcs; | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:160:11: error: 'swprintf' has not been declared in '::' 160 | using ::swprintf; | ^~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:162:11: error: 'swscanf' has not been declared in '::' 162 | using ::swscanf; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:164:11: error: 'vfwprintf' has not been declared in '::' 164 | using ::vfwprintf; | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:166:11: error: 'vfwscanf' has not been declared in '::' 166 | using ::vfwscanf; | ^~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:169:11: error: 'vswprintf' has not been declared in '::' 169 | using ::vswprintf; | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:172:11: error: 'vswscanf' has not been declared in '::' 172 | using ::vswscanf; | ^~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:174:11: error: 'vwprintf' has not been declared in '::' 174 | using ::vwprintf; | ^~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:176:11: error: 'vwscanf' has not been declared in '::' 176 | using ::vwscanf; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:178:11: error: 'wcrtomb' has not been declared in '::' 178 | using ::wcrtomb; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:179:11: error: 'wcscat' has not been declared in '::' 179 | using ::wcscat; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:180:11: error: 'wcscmp' has not been declared in '::' 180 | using ::wcscmp; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:181:11: error: 'wcscoll' has not been declared in '::' 181 | using ::wcscoll; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:182:11: error: 'wcscpy' has not been declared in '::' 182 | using ::wcscpy; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:183:11: error: 'wcscspn' has not been declared in '::' 183 | using ::wcscspn; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:184:11: error: 'wcsftime' has not been declared in '::' 184 | using ::wcsftime; | ^~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:185:11: error: 'wcslen' has not been declared in '::' 185 | using ::wcslen; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:186:11: error: 'wcsncat' has not been declared in '::' 186 | using ::wcsncat; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:187:11: error: 'wcsncmp' has not been declared in '::' 187 | using ::wcsncmp; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:188:11: error: 'wcsncpy' has not been declared in '::' 188 | using ::wcsncpy; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:189:11: error: 'wcsrtombs' has not been declared in '::' 189 | using ::wcsrtombs; | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:190:11: error: 'wcsspn' has not been declared in '::' 190 | using ::wcsspn; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:191:11: error: 'wcstod' has not been declared in '::' 191 | using ::wcstod; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:193:11: error: 'wcstof' has not been declared in '::' 193 | using ::wcstof; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:195:11: error: 'wcstok' has not been declared in '::' 195 | using ::wcstok; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:196:11: error: 'wcstol' has not been declared in '::' 196 | using ::wcstol; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:197:11: error: 'wcstoul' has not been declared in '::' 197 | using ::wcstoul; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:198:11: error: 'wcsxfrm' has not been declared in '::' 198 | using ::wcsxfrm; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:199:11: error: 'wctob' has not been declared in '::' 199 | using ::wctob; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:200:11: error: 'wmemcmp' has not been declared in '::' 200 | using ::wmemcmp; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:201:11: error: 'wmemcpy' has not been declared in '::' 201 | using ::wmemcpy; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:202:11: error: 'wmemmove' has not been declared in '::' 202 | using ::wmemmove; | ^~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:203:11: error: 'wmemset' has not been declared in '::' 203 | using ::wmemset; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:204:11: error: 'wprintf' has not been declared in '::' 204 | using ::wprintf; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:205:11: error: 'wscanf' has not been declared in '::' 205 | using ::wscanf; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:206:11: error: 'wcschr' has not been declared in '::' 206 | using ::wcschr; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:207:11: error: 'wcspbrk' has not been declared in '::' 207 | using ::wcspbrk; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:208:11: error: 'wcsrchr' has not been declared in '::' 208 | using ::wcsrchr; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:209:11: error: 'wcsstr' has not been declared in '::' 209 | using ::wcsstr; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:210:11: error: 'wmemchr' has not been declared in '::' 210 | using ::wmemchr; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar: In function 'wchar_t* std::wcschr(wchar_t*, wchar_t)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:215:19: error: invalid conversion from 'const wchar_t*' to 'wchar_t*' [-fpermissive] 215 | { return wcschr(const_cast(__p), __c); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | const wchar_t* /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:214:19: note: initializing argument 1 of 'wchar_t* std::wcschr(wchar_t*, wchar_t)' 214 | wcschr(wchar_t* __p, wchar_t __c) | ~~~~~~~~~^~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar: In function 'wchar_t* std::wcspbrk(wchar_t*, const wchar_t*)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:219:20: error: invalid conversion from 'const wchar_t*' to 'wchar_t*' [-fpermissive] 219 | { return wcspbrk(const_cast(__s1), __s2); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | const wchar_t* /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:218:20: note: initializing argument 1 of 'wchar_t* std::wcspbrk(wchar_t*, const wchar_t*)' 218 | wcspbrk(wchar_t* __s1, const wchar_t* __s2) | ~~~~~~~~~^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar: In function 'wchar_t* std::wcsrchr(wchar_t*, wchar_t)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:223:20: error: invalid conversion from 'const wchar_t*' to 'wchar_t*' [-fpermissive] 223 | { return wcsrchr(const_cast(__p), __c); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | const wchar_t* /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:222:20: note: initializing argument 1 of 'wchar_t* std::wcsrchr(wchar_t*, wchar_t)' 222 | wcsrchr(wchar_t* __p, wchar_t __c) | ~~~~~~~~~^~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar: In function 'wchar_t* std::wcsstr(wchar_t*, const wchar_t*)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:227:19: error: invalid conversion from 'const wchar_t*' to 'wchar_t*' [-fpermissive] 227 | { return wcsstr(const_cast(__s1), __s2); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | const wchar_t* /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:226:19: note: initializing argument 1 of 'wchar_t* std::wcsstr(wchar_t*, const wchar_t*)' 226 | wcsstr(wchar_t* __s1, const wchar_t* __s2) | ~~~~~~~~~^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar: In function 'wchar_t* std::wmemchr(wchar_t*, wchar_t, size_t)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:231:20: error: invalid conversion from 'const wchar_t*' to 'wchar_t*' [-fpermissive] 231 | { return wmemchr(const_cast(__p), __c, __n); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | const wchar_t* /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:230:20: note: initializing argument 1 of 'wchar_t* std::wmemchr(wchar_t*, wchar_t, size_t)' 230 | wmemchr(wchar_t* __p, wchar_t __c, size_t __n) | ~~~~~~~~~^~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar: At global scope: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:251:11: error: 'wcstold' has not been declared in '::' 251 | using ::wcstold; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:260:11: error: 'wcstoll' has not been declared in '::' 260 | using ::wcstoll; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:261:11: error: 'wcstoull' has not been declared in '::' 261 | using ::wcstoull; | ^~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:267:22: error: 'wcstold' has not been declared in '__gnu_cxx' 267 | using ::__gnu_cxx::wcstold; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:268:22: error: 'wcstoll' has not been declared in '__gnu_cxx' 268 | using ::__gnu_cxx::wcstoll; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:269:22: error: 'wcstoull' has not been declared in '__gnu_cxx' 269 | using ::__gnu_cxx::wcstoull; | ^~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:283:14: error: 'wcstof' has not been declared in 'std' 283 | using std::wcstof; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:286:14: error: 'vfwscanf' has not been declared in 'std' 286 | using std::vfwscanf; | ^~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:289:14: error: 'vswscanf' has not been declared in 'std' 289 | using std::vswscanf; | ^~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:292:14: error: 'vwscanf' has not been declared in 'std' 292 | using std::vwscanf; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:296:14: error: 'wcstold' has not been declared in 'std' 296 | using std::wcstold; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:297:14: error: 'wcstoll' has not been declared in 'std' 297 | using std::wcstoll; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:298:14: error: 'wcstoull' has not been declared in 'std' 298 | using std::wcstoull; | ^~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/postypes.h:204:16: error: 'mbstate_t' was not declared in this scope 204 | typedef fpos streampos; | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/postypes.h:204:25: error: template argument 1 is invalid 204 | typedef fpos streampos; | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/postypes.h:206:16: error: 'mbstate_t' was not declared in this scope 206 | typedef fpos wstreampos; | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/postypes.h:206:25: error: template argument 1 is invalid 206 | typedef fpos wstreampos; | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/postypes.h:215:16: error: 'mbstate_t' was not declared in this scope 215 | typedef fpos u16streampos; | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/postypes.h:215:25: error: template argument 1 is invalid 215 | typedef fpos u16streampos; | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/postypes.h:217:16: error: 'mbstate_t' was not declared in this scope 217 | typedef fpos u32streampos; | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/postypes.h:217:25: error: template argument 1 is invalid 217 | typedef fpos u32streampos; | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h:90:20: error: 'mbstate_t' in namespace 'std' does not name a type 90 | typedef std::mbstate_t state_type; | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h:336:15: error: 'mbstate_t' does not name a type 336 | typedef mbstate_t state_type; | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h:478:15: error: 'mbstate_t' does not name a type 478 | typedef mbstate_t state_type; | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h: In static member function 'static int std::char_traits::compare(const char_type*, const char_type*, std::size_t)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h:512:16: error: 'wmemcmp' was not declared in this scope; did you mean 'wmemchr'? 512 | return wmemcmp(__s1, __s2, __n); | ^~~~~~~ | wmemchr /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h: In static member function 'static std::size_t std::char_traits::length(const char_type*)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h:522:16: error: 'wcslen' was not declared in this scope 522 | return wcslen(__s); | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h: In static member function 'static const std::char_traits::char_type* std::char_traits::find(const char_type*, std::size_t, const char_type&)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h:534:24: error: invalid conversion from 'const std::char_traits::char_type*' {aka 'const wchar_t*'} to 'wchar_t*' [-fpermissive] 534 | return wmemchr(__s, __a, __n); | ^~~ | | | const std::char_traits::char_type* {aka const wchar_t*} /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwchar:230:20: note: initializing argument 1 of 'wchar_t* std::wmemchr(wchar_t*, wchar_t, size_t)' 230 | wmemchr(wchar_t* __p, wchar_t __c, size_t __n) | ~~~~~~~~~^~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h: In static member function 'static std::char_traits::char_type* std::char_traits::move(char_type*, const char_type*, std::size_t)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h:546:16: error: 'wmemmove' was not declared in this scope 546 | return wmemmove(__s1, __s2, __n); | ^~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h: In static member function 'static std::char_traits::char_type* std::char_traits::copy(char_type*, const char_type*, std::size_t)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h:558:16: error: 'wmemcpy' was not declared in this scope; did you mean 'Memcpy'? 558 | return wmemcpy(__s1, __s2, __n); | ^~~~~~~ | Memcpy /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h: In static member function 'static std::char_traits::char_type* std::char_traits::assign(char_type*, std::size_t, char_type)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h:570:16: error: 'wmemset' was not declared in this scope 570 | return wmemset(__s, __a, __n); | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h: At global scope: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h:753:15: error: 'mbstate_t' does not name a type 753 | typedef mbstate_t state_type; | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/char_traits.h:880:15: error: 'mbstate_t' does not name a type 880 | typedef mbstate_t state_type; | ^~~~~~~~~ In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/clocale:42, from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++locale.h:41, from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/localefwd.h:40, from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/string:45: /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/locale.h:32:1: error: '__BEGIN_DECLS' does not name a type 32 | __BEGIN_DECLS | ^~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/locale.h:125:63: error: expected initializer before '__THROW' 125 | extern char *setlocale (int __category, const char *__locale) __THROW; | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/locale.h:128:40: error: expected initializer before '__THROW' 128 | extern struct lconv *localeconv (void) __THROW; | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/locale.h:130:1: error: '__END_NAMESPACE_STD' does not name a type 130 | __END_NAMESPACE_STD | ^~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++locale.h:62:11: error: '__locale_t' does not name a type 62 | typedef __locale_t __c_locale; | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++locale.h:74:26: error: '__c_locale' does not name a type 74 | __convert_from_v(const __c_locale& __cloc __attribute__ ((__unused__)), | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++locale.h: In function 'int std::__convert_from_v(const int&, char*, int, const char*, ...)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++locale.h:82:24: error: 'setlocale' is not a member of 'std' 82 | char* __old = std::setlocale(LC_NUMERIC, 0); | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++locale.h:89:14: error: 'setlocale' is not a member of 'std' 89 | std::setlocale(LC_NUMERIC, "C"); | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++locale.h:109:14: error: 'setlocale' is not a member of 'std' 109 | std::setlocale(LC_NUMERIC, __sav); | ^~~~~~~~~ In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cctype:42, from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/localefwd.h:42: /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h: At global scope: /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:29:1: error: '__BEGIN_DECLS' does not name a type 29 | __BEGIN_DECLS | ^~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:81:6: error: expected initializer before '__THROW' 81 | __THROW __attribute__ ((__const__)); | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:83:6: error: expected initializer before '__THROW' 83 | __THROW __attribute__ ((__const__)); | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:85:6: error: expected initializer before '__THROW' 85 | __THROW __attribute__ ((__const__)); | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:105:1: error: '__BEGIN_NAMESPACE_STD' does not name a type 105 | __BEGIN_NAMESPACE_STD | ^~~~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:112:1: error: expected initializer before '__THROW' 112 | __exctype (isalpha); | ^~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:113:1: error: expected initializer before '__THROW' 113 | __exctype (iscntrl); | ^~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:114:1: error: expected initializer before '__THROW' 114 | __exctype (isdigit); | ^~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:115:1: error: expected initializer before '__THROW' 115 | __exctype (islower); | ^~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:116:1: error: expected initializer before '__THROW' 116 | __exctype (isgraph); | ^~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:117:1: error: expected initializer before '__THROW' 117 | __exctype (isprint); | ^~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:118:1: error: expected initializer before '__THROW' 118 | __exctype (ispunct); | ^~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:119:1: error: expected initializer before '__THROW' 119 | __exctype (isspace); | ^~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:120:1: error: expected initializer before '__THROW' 120 | __exctype (isupper); | ^~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:121:1: error: expected initializer before '__THROW' 121 | __exctype (isxdigit); | ^~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:125:30: error: expected initializer before '__THROW' 125 | extern int tolower (int __c) __THROW; | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:128:30: error: expected initializer before '__THROW' 128 | extern int toupper (int __c) __THROW; | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/ctype.h:130:1: error: '__END_NAMESPACE_STD' does not name a type 130 | __END_NAMESPACE_STD | ^~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cctype:87:11: error: 'isblank' has not been declared in '::' 87 | using ::isblank; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/localefwd.h:139:40: error: 'mbstate_t' was not declared in this scope 139 | template<> class codecvt; | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/localefwd.h:139:49: error: template argument 3 is invalid 139 | template<> class codecvt; | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/localefwd.h:141:43: error: 'mbstate_t' was not declared in this scope 141 | template<> class codecvt; | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/localefwd.h:141:52: error: template argument 3 is invalid 141 | template<> class codecvt; | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/localefwd.h:144:44: error: 'mbstate_t' was not declared in this scope 144 | template<> class codecvt; | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/localefwd.h:144:53: error: template argument 3 is invalid 144 | template<> class codecvt; | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/localefwd.h:145:44: error: 'mbstate_t' was not declared in this scope 145 | template<> class codecvt; | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/localefwd.h:145:53: error: template argument 3 is invalid 145 | template<> class codecvt; | ^ In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/ext/string_conversions.h:43: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:131:11: error: 'div_t' has not been declared in '::' 131 | using ::div_t; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:134:11: error: 'abort' has not been declared in '::' 134 | using ::abort; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:138:11: error: 'atexit' has not been declared in '::' 138 | using ::atexit; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:141:11: error: 'at_quick_exit' has not been declared in '::' 141 | using ::at_quick_exit; | ^~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:144:11: error: 'atof' has not been declared in '::' 144 | using ::atof; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:145:11: error: 'atoi' has not been declared in '::' 145 | using ::atoi; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:146:11: error: 'atol' has not been declared in '::' 146 | using ::atol; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:147:11: error: 'bsearch' has not been declared in '::' 147 | using ::bsearch; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:149:11: error: 'div' has not been declared in '::' 149 | using ::div; | ^~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:150:11: error: 'exit' has not been declared in '::' 150 | using ::exit; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:151:11: error: 'free' has not been declared in '::' 151 | using ::free; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:152:11: error: 'getenv' has not been declared in '::' 152 | using ::getenv; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:153:11: error: 'labs' has not been declared in '::' 153 | using ::labs; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:154:11: error: 'ldiv' has not been declared in '::' 154 | using ::ldiv; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:155:11: error: 'malloc' has not been declared in '::' 155 | using ::malloc; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:157:11: error: 'mblen' has not been declared in '::' 157 | using ::mblen; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:158:11: error: 'mbstowcs' has not been declared in '::' 158 | using ::mbstowcs; | ^~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:159:11: error: 'mbtowc' has not been declared in '::' 159 | using ::mbtowc; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:161:11: error: 'qsort' has not been declared in '::' 161 | using ::qsort; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:164:11: error: 'quick_exit' has not been declared in '::' 164 | using ::quick_exit; | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:167:11: error: 'rand' has not been declared in '::' 167 | using ::rand; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:168:11: error: 'realloc' has not been declared in '::' 168 | using ::realloc; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:169:11: error: 'srand' has not been declared in '::' 169 | using ::srand; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:170:11: error: 'strtod' has not been declared in '::' 170 | using ::strtod; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:171:11: error: 'strtol' has not been declared in '::' 171 | using ::strtol; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:172:11: error: 'strtoul' has not been declared in '::' 172 | using ::strtoul; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:173:11: error: 'system' has not been declared in '::' 173 | using ::system; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:175:11: error: 'wcstombs' has not been declared in '::' 175 | using ::wcstombs; | ^~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:176:11: error: 'wctomb' has not been declared in '::' 176 | using ::wctomb; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib: In function 'ldiv_t std::div(long int, long int)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:181:53: error: 'ldiv' was not declared in this scope; did you mean 'div'? 181 | div(long __i, long __j) _GLIBCXX_NOTHROW { return ldiv(__i, __j); } | ^~~~ | div /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib: At global scope: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:204:11: error: 'lldiv_t' has not been declared in '::' 204 | using ::lldiv_t; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:210:11: error: '_Exit' has not been declared in '::' 210 | using ::_Exit; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:214:11: error: 'llabs' has not been declared in '::' 214 | using ::llabs; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:216:10: error: 'lldiv_t' does not name a type; did you mean 'ldiv_t'? 216 | inline lldiv_t | ^~~~~~~ | ldiv_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:220:11: error: 'lldiv' has not been declared in '::' 220 | using ::lldiv; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:231:11: error: 'atoll' has not been declared in '::' 231 | using ::atoll; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:232:11: error: 'strtoll' has not been declared in '::' 232 | using ::strtoll; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:233:11: error: 'strtoull' has not been declared in '::' 233 | using ::strtoull; | ^~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:235:11: error: 'strtof' has not been declared in '::' 235 | using ::strtof; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:236:11: error: 'strtold' has not been declared in '::' 236 | using ::strtold; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:244:22: error: 'lldiv_t' has not been declared in '__gnu_cxx' 244 | using ::__gnu_cxx::lldiv_t; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:246:22: error: '_Exit' has not been declared in '__gnu_cxx' 246 | using ::__gnu_cxx::_Exit; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:248:22: error: 'llabs' has not been declared in '__gnu_cxx' 248 | using ::__gnu_cxx::llabs; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:249:22: error: 'div' has not been declared in '__gnu_cxx' 249 | using ::__gnu_cxx::div; | ^~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:250:22: error: 'lldiv' has not been declared in '__gnu_cxx' 250 | using ::__gnu_cxx::lldiv; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:252:22: error: 'atoll' has not been declared in '__gnu_cxx' 252 | using ::__gnu_cxx::atoll; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:253:22: error: 'strtof' has not been declared in '__gnu_cxx' 253 | using ::__gnu_cxx::strtof; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:254:22: error: 'strtoll' has not been declared in '__gnu_cxx' 254 | using ::__gnu_cxx::strtoll; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:255:22: error: 'strtoull' has not been declared in '__gnu_cxx' 255 | using ::__gnu_cxx::strtoull; | ^~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdlib:256:22: error: 'strtold' has not been declared in '__gnu_cxx' 256 | using ::__gnu_cxx::strtold; | ^~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:29:1: error: '__BEGIN_DECLS' does not name a type 29 | __BEGIN_DECLS | ^~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:46:1: error: '__BEGIN_NAMESPACE_STD' does not name a type 46 | __BEGIN_NAMESPACE_STD | ^~~~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:49:1: error: '__END_NAMESPACE_STD' does not name a type 49 | __END_NAMESPACE_STD | ^~~~~~~~~~~~~~~~~~~ In file included from /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/libio.h:32: /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/_G_config.h:25:3: error: '_G_fpos_t' does not name a type 25 | } _G_fpos_t; | ^~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/libio.h:307:3: error: 'size_t' does not name a type 307 | size_t __pad5; | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/libio.h:58:1: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' 57 | # include +++ |+#include 58 | #endif /*!__P*/ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/libio.h:311:67: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 311 | char _unused2[15 * sizeof (int) - 4 * sizeof (void *) - sizeof (size_t)]; | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/libio.h:339:62: error: 'size_t' has not been declared 339 | typedef __ssize_t __io_read_fn (void *__cookie, char *__buf, size_t __nbytes); | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/libio.h:348:34: error: 'size_t' has not been declared 348 | size_t __n); | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/libio.h:470:8: error: 'size_t' does not name a type 470 | extern _IO_size_t _IO_sgetn (_IO_FILE *, void *, _IO_size_t); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/libio.h:470:8: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:110:9: error: '_G_fpos_t' does not name a type; did you mean '_G_fpos64_t'? 110 | typedef _G_fpos_t fpos_t; | ^~~~~~~~~ | _G_fpos64_t /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:195:8: error: 'FILE' does not name a type 195 | extern FILE *tmpfile (void) __wur; | ^~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:165:1: note: 'FILE' is defined in header ''; this is probably fixable by adding '#include ' 164 | #include +++ |+#include 165 | /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:237:20: error: 'FILE' was not declared in this scope 237 | extern int fclose (FILE *__stream); | ^~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:237:20: note: 'FILE' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:237:26: error: '__stream' was not declared in this scope 237 | extern int fclose (FILE *__stream); | ^~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:242:20: error: 'FILE' was not declared in this scope 242 | extern int fflush (FILE *__stream); | ^~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:242:20: note: 'FILE' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:242:26: error: '__stream' was not declared in this scope 242 | extern int fflush (FILE *__stream); | ^~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:272:8: error: 'FILE' does not name a type 272 | extern FILE *fopen (const char *__restrict __filename, | ^~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:272:8: note: 'FILE' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:278:8: error: 'FILE' does not name a type 278 | extern FILE *freopen (const char *__restrict __filename, | ^~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:278:8: note: 'FILE' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:332:13: error: variable or field 'setbuf' declared void 332 | extern void setbuf (FILE *__restrict __stream, char *__restrict __buf) __THROW; | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:332:21: error: 'FILE' was not declared in this scope 332 | extern void setbuf (FILE *__restrict __stream, char *__restrict __buf) __THROW; | ^~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:332:21: note: 'FILE' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:332:27: error: expected primary-expression before '__restrict' 332 | extern void setbuf (FILE *__restrict __stream, char *__restrict __buf) __THROW; | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:332:48: error: expected primary-expression before 'char' 332 | extern void setbuf (FILE *__restrict __stream, char *__restrict __buf) __THROW; | ^~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:336:21: error: 'FILE' was not declared in this scope 336 | extern int setvbuf (FILE *__restrict __stream, char *__restrict __buf, | ^~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:336:21: note: 'FILE' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:336:27: error: expected primary-expression before '__restrict' 336 | extern int setvbuf (FILE *__restrict __stream, char *__restrict __buf, | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:336:48: error: expected primary-expression before 'char' 336 | extern int setvbuf (FILE *__restrict __stream, char *__restrict __buf, | ^~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:337:21: error: expected primary-expression before 'int' 337 | int __modes, size_t __n) __THROW; | ^~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:337:34: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 337 | int __modes, size_t __n) __THROW; | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:337:44: error: expression list treated as compound expression in initializer [-fpermissive] 337 | int __modes, size_t __n) __THROW; | ^ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:356:21: error: 'FILE' was not declared in this scope 356 | extern int fprintf (FILE *__restrict __stream, | ^~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:356:21: note: 'FILE' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:356:27: error: expected primary-expression before '__restrict' 356 | extern int fprintf (FILE *__restrict __stream, | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:357:21: error: expected primary-expression before 'const' 357 | const char *__restrict __format, ...); | ^~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:357:54: error: expected primary-expression before '...' token 357 | const char *__restrict __format, ...); | ^~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:357:57: error: expression list treated as compound expression in initializer [-fpermissive] 357 | const char *__restrict __format, ...); | ^ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:371:22: error: 'FILE' was not declared in this scope 371 | extern int vfprintf (FILE *__restrict __s, const char *__restrict __format, | ^~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:371:22: note: 'FILE' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:371:28: error: expected primary-expression before '__restrict' 371 | extern int vfprintf (FILE *__restrict __s, const char *__restrict __format, | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:371:44: error: expected primary-expression before 'const' 371 | extern int vfprintf (FILE *__restrict __s, const char *__restrict __format, | ^~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:372:33: error: expected primary-expression before '__arg' 372 | _G_va_list __arg); | ^~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:372:38: error: expression list treated as compound expression in initializer [-fpermissive] 372 | _G_va_list __arg); | ^ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:425:20: error: 'FILE' was not declared in this scope 425 | extern int fscanf (FILE *__restrict __stream, | ^~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:425:20: note: 'FILE' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:425:26: error: expected primary-expression before '__restrict' 425 | extern int fscanf (FILE *__restrict __stream, | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:426:20: error: expected primary-expression before 'const' 426 | const char *__restrict __format, ...) __wur; | ^~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:426:53: error: expected primary-expression before '...' token 426 | const char *__restrict __format, ...) __wur; | ^~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:426:56: error: expression list treated as compound expression in initializer [-fpermissive] 426 | const char *__restrict __format, ...) __wur; | ^ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:531:19: error: 'FILE' was not declared in this scope 531 | extern int fgetc (FILE *__stream); | ^~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:531:19: note: 'FILE' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:531:25: error: '__stream' was not declared in this scope 531 | extern int fgetc (FILE *__stream); | ^~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:532:18: error: 'FILE' was not declared in this scope 532 | extern int getc (FILE *__stream); | ^~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:532:18: note: 'FILE' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:532:24: error: '__stream' was not declared in this scope 532 | extern int getc (FILE *__stream); | ^~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:573:28: error: 'FILE' has not been declared 573 | extern int fputc (int __c, FILE *__stream); | ^~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:574:27: error: 'FILE' has not been declared 574 | extern int putc (int __c, FILE *__stream); | ^~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:622:52: error: 'FILE' has not been declared 622 | extern char *fgets (char *__restrict __s, int __n, FILE *__restrict __stream) | ^~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:689:47: error: 'FILE' has not been declared 689 | extern int fputs (const char *__restrict __s, FILE *__restrict __stream); | ^~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:702:29: error: 'FILE' has not been declared 702 | extern int ungetc (int __c, FILE *__stream); | ^~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:709:8: error: 'size_t' does not name a type 709 | extern size_t fread (void *__restrict __ptr, size_t __size, | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:165:1: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' 164 | #include +++ |+#include 165 | /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:715:8: error: 'size_t' does not name a type 715 | extern size_t fwrite (const void *__restrict __ptr, size_t __size, | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:715:8: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:749:19: error: 'FILE' was not declared in this scope 749 | extern int fseek (FILE *__stream, long int __off, int __whence); | ^~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:749:19: note: 'FILE' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:749:25: error: '__stream' was not declared in this scope 749 | extern int fseek (FILE *__stream, long int __off, int __whence); | ^~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:749:35: error: expected primary-expression before 'long' 749 | extern int fseek (FILE *__stream, long int __off, int __whence); | ^~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:749:51: error: expected primary-expression before 'int' 749 | extern int fseek (FILE *__stream, long int __off, int __whence); | ^~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:749:63: error: expression list treated as compound expression in initializer [-fpermissive] 749 | extern int fseek (FILE *__stream, long int __off, int __whence); | ^ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:754:24: error: 'FILE' was not declared in this scope 754 | extern long int ftell (FILE *__stream) __wur; | ^~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:754:24: note: 'FILE' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:754:30: error: '__stream' was not declared in this scope 754 | extern long int ftell (FILE *__stream) __wur; | ^~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:759:13: error: variable or field 'rewind' declared void 759 | extern void rewind (FILE *__stream); | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:759:21: error: 'FILE' was not declared in this scope 759 | extern void rewind (FILE *__stream); | ^~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:759:21: note: 'FILE' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:759:27: error: '__stream' was not declared in this scope 759 | extern void rewind (FILE *__stream); | ^~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:798:21: error: 'FILE' was not declared in this scope 798 | extern int fgetpos (FILE *__restrict __stream, fpos_t *__restrict __pos); | ^~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:798:21: note: 'FILE' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:798:27: error: expected primary-expression before '__restrict' 798 | extern int fgetpos (FILE *__restrict __stream, fpos_t *__restrict __pos); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:798:48: error: 'fpos_t' was not declared in this scope 798 | extern int fgetpos (FILE *__restrict __stream, fpos_t *__restrict __pos); | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:798:48: note: 'fpos_t' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:798:56: error: expected primary-expression before '__restrict' 798 | extern int fgetpos (FILE *__restrict __stream, fpos_t *__restrict __pos); | ^~~~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:798:72: error: expression list treated as compound expression in initializer [-fpermissive] 798 | extern int fgetpos (FILE *__restrict __stream, fpos_t *__restrict __pos); | ^ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:803:21: error: 'FILE' was not declared in this scope 803 | extern int fsetpos (FILE *__stream, const fpos_t *__pos); | ^~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:803:21: note: 'FILE' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:803:27: error: '__stream' was not declared in this scope 803 | extern int fsetpos (FILE *__stream, const fpos_t *__pos); | ^~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:803:37: error: expected primary-expression before 'const' 803 | extern int fsetpos (FILE *__stream, const fpos_t *__pos); | ^~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:803:56: error: expression list treated as compound expression in initializer [-fpermissive] 803 | extern int fsetpos (FILE *__stream, const fpos_t *__pos); | ^ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:826:13: error: variable or field 'clearerr' declared void 826 | extern void clearerr (FILE *__stream) __THROW; | ^~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:826:23: error: 'FILE' was not declared in this scope 826 | extern void clearerr (FILE *__stream) __THROW; | ^~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:826:23: note: 'FILE' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:826:29: error: '__stream' was not declared in this scope 826 | extern void clearerr (FILE *__stream) __THROW; | ^~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:828:18: error: 'FILE' was not declared in this scope 828 | extern int feof (FILE *__stream) __THROW __wur; | ^~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:828:18: note: 'FILE' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:828:24: error: '__stream' was not declared in this scope 828 | extern int feof (FILE *__stream) __THROW __wur; | ^~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:830:20: error: 'FILE' was not declared in this scope 830 | extern int ferror (FILE *__stream) __THROW __wur; | ^~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:830:20: note: 'FILE' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:830:26: error: '__stream' was not declared in this scope 830 | extern int ferror (FILE *__stream) __THROW __wur; | ^~~~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/stdio.h:943:1: error: expected declaration before '}' token 943 | __END_DECLS | ^~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:98:11: error: 'FILE' has not been declared in '::' 98 | using ::FILE; | ^~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:99:11: error: 'fpos_t' has not been declared in '::' 99 | using ::fpos_t; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:101:11: error: 'clearerr' has not been declared in '::' 101 | using ::clearerr; | ^~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:109:11: error: 'fopen' has not been declared in '::' 109 | using ::fopen; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:113:11: error: 'fread' has not been declared in '::' 113 | using ::fread; | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:114:11: error: 'freopen' has not been declared in '::' 114 | using ::freopen; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:119:11: error: 'fwrite' has not been declared in '::' 119 | using ::fwrite; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:133:11: error: 'rewind' has not been declared in '::' 133 | using ::rewind; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:135:11: error: 'setbuf' has not been declared in '::' 135 | using ::setbuf; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:139:11: error: 'tmpfile' has not been declared in '::' 139 | using ::tmpfile; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:175:11: error: 'snprintf' has not been declared in '::' 175 | using ::snprintf; | ^~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:176:11: error: 'vfscanf' has not been declared in '::' 176 | using ::vfscanf; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:177:11: error: 'vscanf' has not been declared in '::' 177 | using ::vscanf; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:178:11: error: 'vsnprintf' has not been declared in '::' 178 | using ::vsnprintf; | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:179:11: error: 'vsscanf' has not been declared in '::' 179 | using ::vsscanf; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:185:22: error: 'snprintf' has not been declared in '__gnu_cxx' 185 | using ::__gnu_cxx::snprintf; | ^~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:186:22: error: 'vfscanf' has not been declared in '__gnu_cxx' 186 | using ::__gnu_cxx::vfscanf; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:187:22: error: 'vscanf' has not been declared in '__gnu_cxx' 187 | using ::__gnu_cxx::vscanf; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:188:22: error: 'vsnprintf' has not been declared in '__gnu_cxx' 188 | using ::__gnu_cxx::vsnprintf; | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstdio:189:22: error: 'vsscanf' has not been declared in '__gnu_cxx' 189 | using ::__gnu_cxx::vsscanf; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'int std::__cxx11::stoi(const std::string&, std::size_t*, int)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4165:47: error: 'strtol' is not a member of 'std' 4165 | { return __gnu_cxx::__stoa(&std::strtol, "stoi", __str.c_str(), | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'long int std::__cxx11::stol(const std::string&, std::size_t*, int)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4170:36: error: 'strtol' is not a member of 'std' 4170 | { return __gnu_cxx::__stoa(&std::strtol, "stol", __str.c_str(), | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'long unsigned int std::__cxx11::stoul(const std::string&, std::size_t*, int)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4175:36: error: 'strtoul' is not a member of 'std' 4175 | { return __gnu_cxx::__stoa(&std::strtoul, "stoul", __str.c_str(), | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'long long int std::__cxx11::stoll(const std::string&, std::size_t*, int)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4181:36: error: 'strtoll' is not a member of 'std' 4181 | { return __gnu_cxx::__stoa(&std::strtoll, "stoll", __str.c_str(), | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'long long unsigned int std::__cxx11::stoull(const std::string&, std::size_t*, int)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4186:36: error: 'strtoull' is not a member of 'std' 4186 | { return __gnu_cxx::__stoa(&std::strtoull, "stoull", __str.c_str(), | ^~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'double std::__cxx11::stod(const std::string&, std::size_t*)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4200:36: error: 'strtod' is not a member of 'std' 4200 | { return __gnu_cxx::__stoa(&std::strtod, "stod", __str.c_str(), __idx); } | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'float std::__cxx11::stof(const std::string&, std::size_t*)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4206:36: error: 'strtof' is not a member of 'std' 4206 | { return __gnu_cxx::__stoa(&std::strtof, "stof", __str.c_str(), __idx); } | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'long double std::__cxx11::stold(const std::string&, std::size_t*)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4228:36: error: 'strtold' is not a member of 'std' 4228 | { return __gnu_cxx::__stoa(&std::strtold, "stold", __str.c_str(), __idx); } | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'std::string std::__cxx11::to_string(float)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4405:50: error: 'vsnprintf' is not a member of 'std'; did you mean 'vsprintf'? 4405 | return __gnu_cxx::__to_xstring(&std::vsnprintf, __n, | ^~~~~~~~~ | vsprintf /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'std::string std::__cxx11::to_string(double)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4415:50: error: 'vsnprintf' is not a member of 'std'; did you mean 'vsprintf'? 4415 | return __gnu_cxx::__to_xstring(&std::vsnprintf, __n, | ^~~~~~~~~ | vsprintf /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'std::string std::__cxx11::to_string(long double)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4425:50: error: 'vsnprintf' is not a member of 'std'; did you mean 'vsprintf'? 4425 | return __gnu_cxx::__to_xstring(&std::vsnprintf, __n, | ^~~~~~~~~ | vsprintf /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'int std::__cxx11::stoi(const std::wstring&, std::size_t*, int)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4433:47: error: 'wcstol' is not a member of 'std' 4433 | { return __gnu_cxx::__stoa(&std::wcstol, "stoi", __str.c_str(), | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'long int std::__cxx11::stol(const std::wstring&, std::size_t*, int)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4438:36: error: 'wcstol' is not a member of 'std' 4438 | { return __gnu_cxx::__stoa(&std::wcstol, "stol", __str.c_str(), | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'long unsigned int std::__cxx11::stoul(const std::wstring&, std::size_t*, int)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4443:36: error: 'wcstoul' is not a member of 'std' 4443 | { return __gnu_cxx::__stoa(&std::wcstoul, "stoul", __str.c_str(), | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'long long int std::__cxx11::stoll(const std::wstring&, std::size_t*, int)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4448:36: error: 'wcstoll' is not a member of 'std' 4448 | { return __gnu_cxx::__stoa(&std::wcstoll, "stoll", __str.c_str(), | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'long long unsigned int std::__cxx11::stoull(const std::wstring&, std::size_t*, int)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4453:36: error: 'wcstoull' is not a member of 'std' 4453 | { return __gnu_cxx::__stoa(&std::wcstoull, "stoull", __str.c_str(), | ^~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'float std::__cxx11::stof(const std::wstring&, std::size_t*)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4459:36: error: 'wcstof' is not a member of 'std' 4459 | { return __gnu_cxx::__stoa(&std::wcstof, "stof", __str.c_str(), __idx); } | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'double std::__cxx11::stod(const std::wstring&, std::size_t*)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4463:36: error: 'wcstod' is not a member of 'std' 4463 | { return __gnu_cxx::__stoa(&std::wcstod, "stod", __str.c_str(), __idx); } | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h: In function 'long double std::__cxx11::stold(const std::wstring&, std::size_t*)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_string.h:4467:36: error: 'wcstold' is not a member of 'std' 4467 | { return __gnu_cxx::__stoa(&std::wcstold, "stold", __str.c_str(), __idx); } | ^~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/macros/macros.h: In function 'std::string Rcpp::internal::debug::short_file_name(const char*)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/macros/macros.h:34:5: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 34 | size_t index = f.find("/include/"); | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/macros/macros.h:35:9: error: 'index' was not declared in this scope 35 | if (index != std::string::npos) | ^~~~~ In file included from /home/biocbuild/R/R-4.4.1/include/R.h:74: /home/biocbuild/R/R-4.4.1/include/R_ext/Memory.h: At global scope: /home/biocbuild/R/R-4.4.1/include/R_ext/Memory.h:55:21: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 55 | void * R_malloc_gc(size_t); | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/include/R_ext/Memory.h:56:21: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 56 | void * R_calloc_gc(size_t, size_t); | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/include/R_ext/Memory.h:56:29: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 56 | void * R_calloc_gc(size_t, size_t); | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/include/R_ext/Memory.h:56:35: error: expression list treated as compound expression in initializer [-fpermissive] 56 | void * R_calloc_gc(size_t, size_t); | ^ /home/biocbuild/R/R-4.4.1/include/R_ext/Memory.h:57:30: error: 'size_t' has not been declared 57 | void * R_realloc_gc(void *, size_t); | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:43:22: error: 'size_t' has not been declared 43 | size_t __n) __THROW __nonnull ((1, 2)); | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:46:56: error: 'size_t' has not been declared 46 | extern void *memmove (void *__dest, const void *__src, size_t __n) | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:62:42: error: 'size_t' has not been declared 62 | extern void *memset (void *__s, int __c, size_t __n) __THROW __nonnull ((1)); | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:65:56: error: 'size_t' has not been declared 65 | extern int memcmp (const void *__s1, const void *__s2, size_t __n) | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:92:48: error: 'size_t' has not been declared 92 | extern void *memchr (const void *__s, int __c, size_t __n) | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:129:53: error: 'size_t' has not been declared 129 | const char *__restrict __src, size_t __n) | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:137:23: error: 'size_t' has not been declared 137 | size_t __n) __THROW __nonnull ((1, 2)); | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:143:57: error: 'size_t' has not been declared 143 | extern int strncmp (const char *__s1, const char *__s2, size_t __n) | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:150:8: error: 'size_t' does not name a type 150 | extern size_t strxfrm (char *__restrict __dest, | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:33:1: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' 32 | #include +++ |+#include 33 | /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:281:8: error: 'size_t' does not name a type 281 | extern size_t strcspn (const char *__s, const char *__reject) | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:281:8: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:285:8: error: 'size_t' does not name a type 285 | extern size_t strspn (const char *__s, const char *__accept) | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:285:8: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:395:8: error: 'size_t' does not name a type 395 | extern size_t strlen (const char *__s) | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:395:8: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/string.h:447:33: error: 'size_t' has not been declared 447 | extern void __bzero (void *__s, size_t __n) __THROW __nonnull ((1)); | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstring:87:11: error: 'strcspn' has not been declared in '::' 87 | using ::strcspn; | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstring:89:11: error: 'strlen' has not been declared in '::' 89 | using ::strlen; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstring:93:11: error: 'strspn' has not been declared in '::' 93 | using ::strspn; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cstring:97:11: error: 'strxfrm' has not been declared in '::' 97 | using ::strxfrm; | ^~~~~~~ In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/r/headers.h:71: /home/biocbuild/R/R-4.4.1/include/Rinternals.h:749:53: error: 'std::FILE' has not been declared 749 | void R_InitFileInPStream(R_inpstream_t stream, std::FILE *fp, | ^~~~ /home/biocbuild/R/R-4.4.1/include/Rinternals.h:752:55: error: 'std::FILE' has not been declared 752 | void R_InitFileOutPStream(R_outpstream_t stream, std::FILE *fp, | ^~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/sched.h:204:30: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 204 | extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp) | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/sched.h:204:48: error: expected primary-expression before 'const' 204 | extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp) | ^~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/sched.h:204:71: error: expression list treated as compound expression in initializer [-fpermissive] 204 | extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp) | ^ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/bits/sched.h:206:37: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 206 | extern cpu_set_t *__sched_cpualloc (size_t __count) __THROW __wur; | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ In file included from /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/pthread.h:24: /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/time.h:205:8: error: 'size_t' does not name a type 205 | extern size_t strftime (char *__restrict __s, size_t __maxsize, | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/time.h:42:1: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' 41 | # include +++ |+#include 42 | /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/pthread.h:308:39: error: 'size_t' has not been declared 308 | size_t *__guardsize) | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/pthread.h:313:39: error: 'size_t' has not been declared 313 | size_t __guardsize) | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/pthread.h:371:47: error: 'size_t' has not been declared 371 | __attr, size_t *__restrict __stacksize) | ^~~~~~ /home/biocbuild/miniforge3/aarch64-conda-linux-gnu/sysroot/usr/include/pthread.h:378:39: error: 'size_t' has not been declared 378 | size_t __stacksize) | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/gthr-default.h:125:1: error: 'pthread_mutex_timedlock' was not declared in this scope; did you mean 'pthread_mutex_trylock'? 125 | __gthrw(pthread_mutex_timedlock) | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/gthr-default.h:125:1: error: 'pthread_mutex_timedlock' was not declared in this scope; did you mean 'pthread_mutex_trylock'? 125 | __gthrw(pthread_mutex_timedlock) | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/gthr-default.h:141:1: error: 'pthread_mutexattr_settype' was not declared in this scope; did you mean 'pthread_mutexattr_destroy'? 141 | __gthrw(pthread_mutexattr_settype) | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/gthr-default.h:141:1: error: 'pthread_mutexattr_settype' was not declared in this scope; did you mean 'pthread_mutexattr_destroy'? 141 | __gthrw(pthread_mutexattr_settype) | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/gthr-default.h: In function 'int __gthread_mutex_timedlock(__gthread_mutex_t*, const __gthread_time_t*)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/gthr-default.h:782:46: error: '__gthrw_pthread_mutex_timedlock' cannot be used as a function 782 | return __gthrw_(pthread_mutex_timedlock) (__mutex, __abs_timeout); | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/gthr-default.h: In function 'int __gthread_recursive_mutex_init_function(__gthread_recursive_mutex_t*)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/gthr-default.h:810:52: error: 'PTHREAD_MUTEX_RECURSIVE' was not declared in this scope; did you mean 'PTHREAD_MUTEX_RECURSIVE_NP'? 810 | PTHREAD_MUTEX_RECURSIVE); | ^~~~~~~~~~~~~~~~~~~~~~~ | PTHREAD_MUTEX_RECURSIVE_NP /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/gthr-default.h:810:75: error: '__gthrw_pthread_mutexattr_settype' cannot be used as a function 810 | PTHREAD_MUTEX_RECURSIVE); | ^ In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/ios_base.h:41: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.h: At global scope: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.h:400:12: error: '__c_locale' does not name a type; did you mean 'locale'? 400 | static __c_locale _S_c_locale; | ^~~~~~~~~~ | locale /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.h:431:24: error: '__c_locale' has not been declared 431 | _S_create_c_locale(__c_locale& __cloc, const char* __s, | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.h:432:24: error: '__c_locale' has not been declared 432 | __c_locale __old = 0); | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.h:434:12: error: '__c_locale' does not name a type; did you mean 'locale'? 434 | static __c_locale | ^~~~~~~~~~ | locale /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.h:438:25: error: '__c_locale' has not been declared 438 | _S_destroy_c_locale(__c_locale& __cloc); | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.h:440:12: error: '__c_locale' does not name a type; did you mean 'locale'? 440 | static __c_locale | ^~~~~~~~~~ | locale /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.h:445:12: error: '__c_locale' does not name a type; did you mean 'locale'? 445 | static __c_locale | ^~~~~~~~~~ | locale /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.h:687:7: error: '__c_locale' does not name a type; did you mean 'locale'? 687 | __c_locale _M_c_locale_collate; | ^~~~~~~~~~ | locale /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.h:715:25: error: expected ')' before '__cloc' 715 | collate(__c_locale __cloc, size_t __refs = 0) | ~ ^~~~~~~ | ) /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.h: In constructor 'std::__cxx11::collate<_CharT>::collate(std::size_t)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.h:702:24: error: class 'std::__cxx11::collate<_CharT>' does not have any field named '_M_c_locale_collate' 702 | : facet(__refs), _M_c_locale_collate(_S_get_c_locale()) | ^~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.h:702:44: error: there are no arguments to '_S_get_c_locale' that depend on a template parameter, so a declaration of '_S_get_c_locale' must be available [-fpermissive] 702 | : facet(__refs), _M_c_locale_collate(_S_get_c_locale()) | ^~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.h:702:44: note: (if you use '-fpermissive', G++ will accept your code, but allowing the use of an undeclared name is deprecated) /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.h: In destructor 'virtual std::__cxx11::collate<_CharT>::~collate()': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.h:779:29: error: '_M_c_locale_collate' was not declared in this scope 779 | { _S_destroy_c_locale(_M_c_locale_collate); } | ^~~~~~~~~~~~~~~~~~~ In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.h:883: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.tcc: In function 'const _Facet* std::__try_use_facet(const locale&)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.tcc:108:7: error: 'mbstate_t' was not declared in this scope 108 | _GLIBCXX_STD_FACET(codecvt); | ^~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.tcc:108:7: error: template argument 3 is invalid 108 | _GLIBCXX_STD_FACET(codecvt); | ^~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.tcc:108:7: error: expected primary-expression before ')' token 108 | _GLIBCXX_STD_FACET(codecvt); | ^~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.tcc:123:7: error: 'mbstate_t' was not declared in this scope 123 | _GLIBCXX_STD_FACET(codecvt); | ^~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.tcc:123:7: error: template argument 3 is invalid 123 | _GLIBCXX_STD_FACET(codecvt); | ^~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.tcc:123:7: error: expected primary-expression before ')' token 123 | _GLIBCXX_STD_FACET(codecvt); | ^~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.tcc:135:7: error: 'mbstate_t' was not declared in this scope 135 | _GLIBCXX_STD_FACET(codecvt); | ^~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.tcc:135:7: error: template argument 3 is invalid 135 | _GLIBCXX_STD_FACET(codecvt); | ^~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.tcc:135:7: error: expected primary-expression before ')' token 135 | _GLIBCXX_STD_FACET(codecvt); | ^~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.tcc:136:7: error: 'mbstate_t' was not declared in this scope 136 | _GLIBCXX_STD_FACET(codecvt); | ^~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.tcc:136:7: error: template argument 3 is invalid 136 | _GLIBCXX_STD_FACET(codecvt); | ^~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.tcc:136:7: error: expected primary-expression before ')' token 136 | _GLIBCXX_STD_FACET(codecvt); | ^~~~~~~~~~~~~~~~~~ In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/exception_ptr.h:36, from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/exception:166, from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/stdexcept:38, from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/system_error:43, from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/ios_base.h:46: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/cxxabi_init_exception.h: At global scope: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/cxxabi_init_exception.h:63:32: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 63 | __cxa_allocate_exception(size_t) _GLIBCXX_NOTHROW; | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/exception_ptr.h: In function 'std::__exception_ptr::exception_ptr std::make_exception_ptr(_Ex)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/exception_ptr.h:253:55: error: '__cxxabiv1::__cxa_allocate_exception' cannot be used as a function 253 | void* __e = __cxxabiv1::__cxa_allocate_exception(sizeof(_Ex)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:39, from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/basic_ios.h:37, from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/ios:46, from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/ostream:40, from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/iostream:41, from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/RcppCommon.h:53: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwctype: At global scope: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cwctype:89:11: error: 'iswblank' has not been declared in '::' 89 | using ::iswblank; | ^~~~~~~~ In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:41: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/ctype_base.h:49:35: error: '_ISupper' was not declared in this scope; did you mean '_ISwupper'? 49 | static const mask upper = _ISupper; | ^~~~~~~~ | _ISwupper /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/ctype_base.h:50:35: error: '_ISlower' was not declared in this scope; did you mean '_ISwlower'? 50 | static const mask lower = _ISlower; | ^~~~~~~~ | _ISwlower /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/ctype_base.h:51:35: error: '_ISalpha' was not declared in this scope; did you mean '_ISwalpha'? 51 | static const mask alpha = _ISalpha; | ^~~~~~~~ | _ISwalpha /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/ctype_base.h:52:35: error: '_ISdigit' was not declared in this scope; did you mean '_ISwdigit'? 52 | static const mask digit = _ISdigit; | ^~~~~~~~ | _ISwdigit /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/ctype_base.h:53:35: error: '_ISxdigit' was not declared in this scope; did you mean '_ISwxdigit'? 53 | static const mask xdigit = _ISxdigit; | ^~~~~~~~~ | _ISwxdigit /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/ctype_base.h:54:35: error: '_ISspace' was not declared in this scope; did you mean '_ISwspace'? 54 | static const mask space = _ISspace; | ^~~~~~~~ | _ISwspace /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/ctype_base.h:55:35: error: '_ISprint' was not declared in this scope; did you mean '_ISwprint'? 55 | static const mask print = _ISprint; | ^~~~~~~~ | _ISwprint /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/ctype_base.h:56:35: error: '_ISalpha' was not declared in this scope; did you mean '_ISwalpha'? 56 | static const mask graph = _ISalpha | _ISdigit | _ISpunct; | ^~~~~~~~ | _ISwalpha /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/ctype_base.h:56:46: error: '_ISdigit' was not declared in this scope; did you mean '_ISwdigit'? 56 | static const mask graph = _ISalpha | _ISdigit | _ISpunct; | ^~~~~~~~ | _ISwdigit /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/ctype_base.h:56:57: error: '_ISpunct' was not declared in this scope; did you mean '_ISwpunct'? 56 | static const mask graph = _ISalpha | _ISdigit | _ISpunct; | ^~~~~~~~ | _ISwpunct /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/ctype_base.h:57:35: error: '_IScntrl' was not declared in this scope; did you mean '_ISwcntrl'? 57 | static const mask cntrl = _IScntrl; | ^~~~~~~~ | _ISwcntrl /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/ctype_base.h:58:35: error: '_ISpunct' was not declared in this scope; did you mean '_ISwpunct'? 58 | static const mask punct = _ISpunct; | ^~~~~~~~ | _ISwpunct /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/ctype_base.h:59:35: error: '_ISalpha' was not declared in this scope; did you mean '_ISwalpha'? 59 | static const mask alnum = _ISalpha | _ISdigit; | ^~~~~~~~ | _ISwalpha /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/ctype_base.h:59:46: error: '_ISdigit' was not declared in this scope; did you mean '_ISwdigit'? 59 | static const mask alnum = _ISalpha | _ISdigit; | ^~~~~~~~ | _ISwdigit /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/ctype_base.h:61:35: error: '_ISblank' was not declared in this scope; did you mean '_ISwblank'? 61 | static const mask blank = _ISblank; | ^~~~~~~~ | _ISwblank /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:77:26: error: '__c_locale' does not name a type; did you mean 'locale'? 77 | const __c_locale&) throw(); | ^~~~~~~~~~ | locale /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:83:26: error: '__c_locale' does not name a type; did you mean 'locale'? 83 | const __c_locale&) throw(); | ^~~~~~~~~~ | locale /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:88:26: error: '__c_locale' does not name a type; did you mean 'locale'? 88 | const __c_locale&) throw(); | ^~~~~~~~~~ | locale /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:93:26: error: '__c_locale' does not name a type; did you mean 'locale'? 93 | const __c_locale&) throw(); | ^~~~~~~~~~ | locale /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:698:7: error: '__c_locale' does not name a type; did you mean 'locale'? 698 | __c_locale _M_c_locale_ctype; | ^~~~~~~~~~ | locale /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:739:23: error: expected ')' before '__cloc' 739 | ctype(__c_locale __cloc, const mask* __table = 0, bool __del = false, | ~ ^~~~~~~ | ) /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:1203:7: error: '__c_locale' does not name a type; did you mean 'locale'? 1203 | __c_locale _M_c_locale_ctype; | ^~~~~~~~~~ | locale /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:1238:23: error: expected ')' before '__cloc' 1238 | ctype(__c_locale __cloc, size_t __refs = 0); | ~ ^~~~~~~ | ) /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:1730:26: error: expected ')' before '__cloc' 1730 | numpunct(__c_locale __cloc, size_t __refs = 0) | ~ ^~~~~~~ | ) /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:1887:30: error: '__c_locale' has not been declared 1887 | _M_initialize_numpunct(__c_locale __cloc = 0); | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:1898:5: error: variable or field '_M_initialize_numpunct' declared void 1898 | numpunct::_M_initialize_numpunct(__c_locale __cloc); | ^~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:1898:44: error: '__c_locale' was not declared in this scope; did you mean 'locale'? 1898 | numpunct::_M_initialize_numpunct(__c_locale __cloc); | ^~~~~~~~~~ | locale /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:1906:5: error: variable or field '_M_initialize_numpunct' declared void 1906 | numpunct::_M_initialize_numpunct(__c_locale __cloc); | ^~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:1906:47: error: '__c_locale' was not declared in this scope; did you mean 'locale'? 1906 | numpunct::_M_initialize_numpunct(__c_locale __cloc); | ^~~~~~~~~~ | locale /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h: In constructor 'std::__cxx11::numpunct_byname<_CharT>::numpunct_byname(const char*, std::size_t)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:1924:13: error: '__c_locale' was not declared in this scope; did you mean 'locale'? 1924 | __c_locale __tmp; | ^~~~~~~~~~ | locale /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:1925:38: error: '__tmp' was not declared in this scope 1925 | this->_S_create_c_locale(__tmp, __s); | ^~~~~ In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.h:2687: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.tcc: In member function 'virtual _InIter std::num_get<_CharT, _InIter>::do_get(iter_type, iter_type, std::ios_base&, std::ios_base::iostate&, float&) const': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.tcc:697:55: error: there are no arguments to '_S_get_c_locale' that depend on a template parameter, so a declaration of '_S_get_c_locale' must be available [-fpermissive] 697 | std::__convert_to_v(__xtrc.c_str(), __v, __err, _S_get_c_locale()); | ^~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.tcc: In member function 'virtual _InIter std::num_get<_CharT, _InIter>::do_get(iter_type, iter_type, std::ios_base&, std::ios_base::iostate&, double&) const': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.tcc:712:55: error: there are no arguments to '_S_get_c_locale' that depend on a template parameter, so a declaration of '_S_get_c_locale' must be available [-fpermissive] 712 | std::__convert_to_v(__xtrc.c_str(), __v, __err, _S_get_c_locale()); | ^~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.tcc: In member function 'virtual _InIter std::num_get<_CharT, _InIter>::do_get(iter_type, iter_type, std::ios_base&, std::ios_base::iostate&, long double&) const': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.tcc:744:55: error: there are no arguments to '_S_get_c_locale' that depend on a template parameter, so a declaration of '_S_get_c_locale' must be available [-fpermissive] 744 | std::__convert_to_v(__xtrc.c_str(), __v, __err, _S_get_c_locale()); | ^~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.tcc: In member function '_OutIter std::num_put<_CharT, _OutIter>::_M_insert_float(_OutIter, std::ios_base&, _CharT, char, _ValueT) const': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.tcc:1023:41: error: there are no arguments to '_S_get_c_locale' that depend on a template parameter, so a declaration of '_S_get_c_locale' must be available [-fpermissive] 1023 | __len = std::__convert_from_v(_S_get_c_locale(), __cs, __cs_size, | ^~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.tcc:1026:41: error: there are no arguments to '_S_get_c_locale' that depend on a template parameter, so a declaration of '_S_get_c_locale' must be available [-fpermissive] 1026 | __len = std::__convert_from_v(_S_get_c_locale(), __cs, __cs_size, | ^~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.tcc:1035:45: error: there are no arguments to '_S_get_c_locale' that depend on a template parameter, so a declaration of '_S_get_c_locale' must be available [-fpermissive] 1035 | __len = std::__convert_from_v(_S_get_c_locale(), __cs, __cs_size, | ^~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets.tcc:1038:45: error: there are no arguments to '_S_get_c_locale' that depend on a template parameter, so a declaration of '_S_get_c_locale' must be available [-fpermissive] 1038 | __len = std::__convert_from_v(_S_get_c_locale(), __cs, __cs_size, | ^~~~~~~~~~~~~~~ In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:39, from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/locale:43, from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/iomanip:48, from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/RcppCommon.h:54: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/ctime: At global scope: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/ctime:72:11: error: 'strftime' has not been declared in '::' 72 | using ::strftime; | ^~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:183:7: error: '__c_locale' does not name a type; did you mean 'locale'? 183 | __c_locale _M_c_locale_timepunct; | ^~~~~~~~~~ | locale /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:207:29: error: expected ')' before '__cloc' 207 | __timepunct(__c_locale __cloc, const char* __s, size_t __refs = 0); | ~ ^~~~~~~ | ) /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:322:31: error: '__c_locale' has not been declared 322 | _M_initialize_timepunct(__c_locale __cloc = 0); | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:331:5: error: variable or field '_M_initialize_timepunct' declared void 331 | __timepunct::_M_initialize_timepunct(__c_locale __cloc); | ^~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:331:48: error: '__c_locale' was not declared in this scope; did you mean 'locale'? 331 | __timepunct::_M_initialize_timepunct(__c_locale __cloc); | ^~~~~~~~~~ | locale /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:340:5: error: variable or field '_M_initialize_timepunct' declared void 340 | __timepunct::_M_initialize_timepunct(__c_locale __cloc); | ^~~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:340:51: error: '__c_locale' was not declared in this scope; did you mean 'locale'? 340 | __timepunct::_M_initialize_timepunct(__c_locale __cloc); | ^~~~~~~~~~ | locale In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:352: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/time_members.h: In constructor 'std::__timepunct<_CharT>::__timepunct(std::size_t)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/time_members.h:43:34: error: class 'std::__timepunct<_CharT>' does not have any field named '_M_c_locale_timepunct' 43 | : facet(__refs), _M_data(0), _M_c_locale_timepunct(0), | ^~~~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/time_members.h: In constructor 'std::__timepunct<_CharT>::__timepunct(__cache_type*, std::size_t)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/time_members.h:49:40: error: class 'std::__timepunct<_CharT>' does not have any field named '_M_c_locale_timepunct' 49 | : facet(__refs), _M_data(__cache), _M_c_locale_timepunct(0), | ^~~~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/time_members.h: At global scope: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/time_members.h:54:37: error: expected constructor, destructor, or type conversion before '(' token 54 | __timepunct<_CharT>::__timepunct(__c_locale __cloc, const char* __s, | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/time_members.h: In destructor 'virtual std::__timepunct<_CharT>::~__timepunct()': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/time_members.h:85:27: error: '_M_c_locale_timepunct' was not declared in this scope; did you mean '_M_name_timepunct'? 85 | _S_destroy_c_locale(_M_c_locale_timepunct); | ^~~~~~~~~~~~~~~~~~~~~ | _M_name_timepunct /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h: At global scope: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1119:28: error: expected ')' before '__cloc' 1119 | moneypunct(__c_locale __cloc, const char* __s, size_t __refs = 0) | ~ ^~~~~~~ | ) /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1408:33: error: '__c_locale' has not been declared 1408 | _M_initialize_moneypunct(__c_locale __cloc = 0, | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1426:5: error: variable or field '_M_initialize_moneypunct' declared void 1426 | moneypunct::_M_initialize_moneypunct(__c_locale, const char*); | ^~~~~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1426:54: error: '__c_locale' was not declared in this scope; did you mean 'locale'? 1426 | moneypunct::_M_initialize_moneypunct(__c_locale, const char*); | ^~~~~~~~~~ | locale /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1426:66: error: expected primary-expression before 'const' 1426 | moneypunct::_M_initialize_moneypunct(__c_locale, const char*); | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1430:5: error: variable or field '_M_initialize_moneypunct' declared void 1430 | moneypunct::_M_initialize_moneypunct(__c_locale, const char*); | ^~~~~~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1430:55: error: '__c_locale' was not declared in this scope; did you mean 'locale'? 1430 | moneypunct::_M_initialize_moneypunct(__c_locale, const char*); | ^~~~~~~~~~ | locale /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1430:67: error: expected primary-expression before 'const' 1430 | moneypunct::_M_initialize_moneypunct(__c_locale, const char*); | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1441:5: error: variable or field '_M_initialize_moneypunct' declared void 1441 | moneypunct::_M_initialize_moneypunct(__c_locale, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1441:57: error: '__c_locale' was not declared in this scope; did you mean 'locale'? 1441 | moneypunct::_M_initialize_moneypunct(__c_locale, | ^~~~~~~~~~ | locale /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1442:57: error: expected primary-expression before 'const' 1442 | const char*); | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1446:5: error: variable or field '_M_initialize_moneypunct' declared void 1446 | moneypunct::_M_initialize_moneypunct(__c_locale, | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1446:58: error: '__c_locale' was not declared in this scope; did you mean 'locale'? 1446 | moneypunct::_M_initialize_moneypunct(__c_locale, | ^~~~~~~~~~ | locale /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1447:58: error: expected primary-expression before 'const' 1447 | const char*); | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h: In constructor 'std::__cxx11::moneypunct_byname<_CharT, _Intl>::moneypunct_byname(const char*, std::size_t)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1467:13: error: '__c_locale' was not declared in this scope; did you mean 'locale'? 1467 | __c_locale __tmp; | ^~~~~~~~~~ | locale /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1468:38: error: '__tmp' was not declared in this scope 1468 | this->_S_create_c_locale(__tmp, __s); | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h: At global scope: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1866:7: error: '__c_locale' does not name a type; did you mean 'locale'? 1866 | __c_locale _M_c_locale_messages; | ^~~~~~~~~~ | locale /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:1895:26: error: expected ')' before '__cloc' 1895 | messages(__c_locale __cloc, const char* __s, size_t __refs = 0); | ~ ^~~~~~~ | ) In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:2064: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/messages_members.h: In constructor 'std::__cxx11::messages<_CharT>::messages(std::size_t)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/messages_members.h:45:22: error: class 'std::__cxx11::messages<_CharT>' does not have any field named '_M_c_locale_messages' 45 | : facet(__refs), _M_c_locale_messages(_S_get_c_locale()), | ^~~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/messages_members.h:45:43: error: there are no arguments to '_S_get_c_locale' that depend on a template parameter, so a declaration of '_S_get_c_locale' must be available [-fpermissive] 45 | : facet(__refs), _M_c_locale_messages(_S_get_c_locale()), | ^~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/messages_members.h: At global scope: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/messages_members.h:50:31: error: expected constructor, destructor, or type conversion before '(' token 50 | messages<_CharT>::messages(__c_locale __cloc, const char* __s, | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/messages_members.h: In destructor 'virtual std::__cxx11::messages<_CharT>::~messages()': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/messages_members.h:83:27: error: '_M_c_locale_messages' was not declared in this scope; did you mean '_M_name_messages'? 83 | _S_destroy_c_locale(_M_c_locale_messages); | ^~~~~~~~~~~~~~~~~~~~ | _M_name_messages In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:2067: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h: At global scope: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:288:7: error: '__c_locale' does not name a type; did you mean 'locale'? 288 | __c_locale _M_c_locale_codecvt; | ^~~~~~~~~~ | locale /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:300:25: error: expected ')' before '__cloc' 300 | codecvt(__c_locale __cloc, size_t __refs = 0); | ~ ^~~~~~~ | ) /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h: In constructor 'std::codecvt<_InternT, _ExternT, _StateT>::codecvt(std::size_t)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:296:9: error: class 'std::codecvt<_InternT, _ExternT, _StateT>' does not have any field named '_M_c_locale_codecvt' 296 | _M_c_locale_codecvt(0) | ^~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h: At global scope: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:341:31: error: 'mbstate_t' was not declared in this scope 341 | class codecvt | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:341:40: error: template argument 3 is invalid 341 | class codecvt | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:342:50: error: 'mbstate_t' was not declared in this scope 342 | : public __codecvt_abstract_base | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:342:59: error: template argument 3 is invalid 342 | : public __codecvt_abstract_base | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:404:34: error: 'mbstate_t' was not declared in this scope 404 | class codecvt | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:404:43: error: template argument 3 is invalid 404 | class codecvt | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:405:53: error: 'mbstate_t' was not declared in this scope 405 | : public __codecvt_abstract_base | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:405:62: error: template argument 3 is invalid 405 | : public __codecvt_abstract_base | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:470:35: error: 'mbstate_t' was not declared in this scope 470 | class codecvt | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:470:44: error: template argument 3 is invalid 470 | class codecvt | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:471:54: error: 'mbstate_t' was not declared in this scope 471 | : public __codecvt_abstract_base | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:471:63: error: template argument 3 is invalid 471 | : public __codecvt_abstract_base | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:527:35: error: 'mbstate_t' was not declared in this scope 527 | class codecvt | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:527:44: error: template argument 3 is invalid 527 | class codecvt | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:528:54: error: 'mbstate_t' was not declared in this scope 528 | : public __codecvt_abstract_base | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:528:63: error: template argument 3 is invalid 528 | : public __codecvt_abstract_base | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:727:42: error: 'mbstate_t' was not declared in this scope 727 | class codecvt_byname | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:727:51: error: template argument 3 is invalid 727 | class codecvt_byname | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:728:38: error: 'mbstate_t' was not declared in this scope 728 | : public codecvt | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:728:47: error: template argument 3 is invalid 728 | : public codecvt | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:745:42: error: 'mbstate_t' was not declared in this scope 745 | class codecvt_byname | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:745:51: error: template argument 3 is invalid 745 | class codecvt_byname | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:746:38: error: 'mbstate_t' was not declared in this scope 746 | : public codecvt | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:746:47: error: template argument 3 is invalid 746 | : public codecvt | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:805:52: error: 'mbstate_t' was not declared in this scope 805 | extern template class codecvt_byname; | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:805:61: error: template argument 3 is invalid 805 | extern template class codecvt_byname; | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:808:31: error: 'mbstate_t' was not declared in this scope 808 | const codecvt& | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:808:40: error: template argument 3 is invalid 808 | const codecvt& | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:809:35: error: 'mbstate_t' was not declared in this scope 809 | use_facet >(const locale&); | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:809:44: error: template argument 3 is invalid 809 | use_facet >(const locale&); | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:809:5: error: template-id 'use_facet< >' for 'const int& std::use_facet(const locale&)' does not match any template declaration 809 | use_facet >(const locale&); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.tcc:195:5: note: candidate is: 'template const _Facet& std::use_facet(const locale&)' 195 | use_facet(const locale& __loc) | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:813:35: error: 'mbstate_t' was not declared in this scope 813 | has_facet >(const locale&); | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:813:44: error: template argument 3 is invalid 813 | has_facet >(const locale&); | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:813:5: error: template-id 'has_facet< >' for 'bool std::has_facet(const locale&)' does not match any template declaration 813 | has_facet >(const locale&); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.tcc:166:5: note: candidate is: 'template bool std::has_facet(const locale&)' 166 | has_facet(const locale& __loc) throw() | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:816:55: error: 'mbstate_t' was not declared in this scope 816 | extern template class codecvt_byname; | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:816:64: error: template argument 3 is invalid 816 | extern template class codecvt_byname; | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:819:34: error: 'mbstate_t' was not declared in this scope 819 | const codecvt& | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:819:43: error: template argument 3 is invalid 819 | const codecvt& | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:820:38: error: 'mbstate_t' was not declared in this scope 820 | use_facet >(const locale&); | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:820:47: error: template argument 3 is invalid 820 | use_facet >(const locale&); | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:820:5: error: template-id 'use_facet< >' for 'const int& std::use_facet(const locale&)' does not match any template declaration 820 | use_facet >(const locale&); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.tcc:195:5: note: candidate is: 'template const _Facet& std::use_facet(const locale&)' 195 | use_facet(const locale& __loc) | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:824:38: error: 'mbstate_t' was not declared in this scope 824 | has_facet >(const locale&); | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:824:47: error: template argument 3 is invalid 824 | has_facet >(const locale&); | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:824:5: error: template-id 'has_facet< >' for 'bool std::has_facet(const locale&)' does not match any template declaration 824 | has_facet >(const locale&); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_classes.tcc:166:5: note: candidate is: 'template bool std::has_facet(const locale&)' 166 | has_facet(const locale& __loc) throw() | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:828:56: error: 'mbstate_t' was not declared in this scope 828 | extern template class codecvt_byname; | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:828:65: error: template argument 3 is invalid 828 | extern template class codecvt_byname; | ^ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:829:56: error: 'mbstate_t' was not declared in this scope 829 | extern template class codecvt_byname; | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/codecvt.h:829:65: error: template argument 3 is invalid 829 | extern template class codecvt_byname; | ^ In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.h:2069: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.tcc: In member function 'virtual _InIter std::__cxx11::money_get<_CharT, _InIter>::do_get(iter_type, iter_type, bool, std::ios_base&, std::ios_base::iostate&, long double&) const': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.tcc:377:58: error: there are no arguments to '_S_get_c_locale' that depend on a template parameter, so a declaration of '_S_get_c_locale' must be available [-fpermissive] 377 | std::__convert_to_v(__str.c_str(), __units, __err, _S_get_c_locale()); | ^~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.tcc: In member function 'virtual _OutIter std::__cxx11::money_put<_CharT, _OutIter>::do_put(iter_type, bool, std::ios_base&, char_type, long double) const': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.tcc:604:41: error: there are no arguments to '_S_get_c_locale' that depend on a template parameter, so a declaration of '_S_get_c_locale' must be available [-fpermissive] 604 | int __len = std::__convert_from_v(_S_get_c_locale(), __cs, __cs_size, | ^~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/locale_facets_nonio.tcc:611:41: error: there are no arguments to '_S_get_c_locale' that depend on a template parameter, so a declaration of '_S_get_c_locale' must be available [-fpermissive] 611 | __len = std::__convert_from_v(_S_get_c_locale(), __cs, __cs_size, | ^~~~~~~~~~~~~~~ In file included from /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/algorithm:61, from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/RcppCommon.h:65: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/stl_algo.h: In function 'void std::random_shuffle(_RAIter, _RAIter)': /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/bits/stl_algo.h:4503:48: error: 'rand' is not a member of 'std'; did you mean 'rank'? 4503 | + std::rand() % ((__i - __first) + 1); | ^~~~ | rank /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/utils/tinyformat/tinyformat.h: In function 'void tinyformat::detail::formatImpl(std::ostream&, const char*, const FormatArg*, int)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/utils/tinyformat/tinyformat.h:824:17: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 824 | for(size_t i = 0, iend = result.size(); i < iend; ++i) | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/utils/tinyformat/tinyformat.h:824:53: error: 'i' was not declared in this scope 824 | for(size_t i = 0, iend = result.size(); i < iend; ++i) | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/utils/tinyformat/tinyformat.h:824:57: error: 'iend' was not declared in this scope 824 | for(size_t i = 0, iend = result.size(); i < iend; ++i) | ^~~~ In file included from /home/biocbuild/R/R-4.4.1/include/R_ext/GraphicsEngine.h:233, from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Interrupt.h:25, from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/RcppCommon.h:143: /home/biocbuild/R/R-4.4.1/include/R_ext/GraphicsDevice.h: At global scope: /home/biocbuild/R/R-4.4.1/include/R_ext/GraphicsDevice.h:984:57: error: 'size_t' has not been declared 984 | extern void *AdobeSymbol2utf8(char*out, const char *in, size_t nwork, | ^~~~~~ /home/biocbuild/R/R-4.4.1/include/R_ext/GraphicsDevice.h:990:8: error: 'size_t' does not name a type 990 | extern size_t Rf_ucstoutf8(char *s, const unsigned int c); | ^~~~~~ /home/biocbuild/R/R-4.4.1/include/R_ext/GraphicsDevice.h:977:1: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' 976 | #include +++ |+#include 977 | LibExtern Rboolean R_interrupts_suspended; In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/RcppCommon.h:168: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/export.h: In function 'std::wstring Rcpp::internal::as_string_elt__impl(SEXP, R_xlen_t, Rcpp::traits::true_type)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/export.h:31:50: error: there are no arguments to 'strlen' that depend on a template parameter, so a declaration of 'strlen' must be available [-fpermissive] 31 | return std::wstring(y, y+strlen(y) ) ; | ^~~~~~ In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/RcppCommon.h:169: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/r_coerce.h: In function 'int Rcpp::internal::integer_width(int)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/r_coerce.h:206:32: error: '::log10' has not been declared; did you mean 'std::log10'? 206 | return n < 0 ? ( (int) ( ::log10( -n+0.5) + 2 ) ) : ( (int) ( ::log10( n+0.5) + 1 ) ) ; | ^~~~~ | std::log10 In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/RcppCommon.h:66: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1095:5: note: 'std::log10' declared here 1095 | log10(const complex<_Tp>& __z) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/r_coerce.h:206:69: error: '::log10' has not been declared; did you mean 'std::log10'? 206 | return n < 0 ? ( (int) ( ::log10( -n+0.5) + 2 ) ) : ( (int) ( ::log10( n+0.5) + 1 ) ) ; | ^~~~~ | std::log10 /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1095:5: note: 'std::log10' declared here 1095 | log10(const complex<_Tp>& __z) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/r_coerce.h: In function 'const char* Rcpp::internal::coerce_to_string(typename Rcpp::traits::storage_type::type) [with int RTYPE = 15; typename Rcpp::traits::storage_type::type = Rcomplex]': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/r_coerce.h:219:5: error: 'snprintf' was not declared in this scope 219 | snprintf(tmp1, 127, "%f", x.r); | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/r_coerce.h:1:1: note: 'snprintf' is defined in header ''; this is probably fixable by adding '#include ' +++ |+#include 1 | // -*- mode: C++; c-indent-level: 4; c-basic-offset: 4; tab-width: 8 -*- /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/r_coerce.h: In function 'const char* Rcpp::internal::coerce_to_string(typename Rcpp::traits::storage_type::type) [with int RTYPE = 14; typename Rcpp::traits::storage_type::type = double]': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/r_coerce.h:241:5: error: 'snprintf' was not declared in this scope 241 | snprintf(tmp, 127, "%f", x); | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/r_coerce.h:241:5: note: 'snprintf' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/r_coerce.h: In function 'const char* Rcpp::internal::coerce_to_string(typename Rcpp::traits::storage_type::type) [with int RTYPE = 13; typename Rcpp::traits::storage_type::type = int]': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/r_coerce.h:249:5: error: 'snprintf' was not declared in this scope 249 | snprintf(buffer, NB, "%*d", integer_width(from), from); | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/r_coerce.h:249:5: note: 'snprintf' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/r_coerce.h: In function 'const char* Rcpp::internal::coerce_to_string(typename Rcpp::traits::storage_type::type) [with int RTYPE = 24; typename Rcpp::traits::storage_type::type = unsigned char]': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/r_coerce.h:255:5: error: 'snprintf' was not declared in this scope 255 | snprintf(buff, 3, "%02x", from); | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/r_coerce.h:255:5: note: 'snprintf' is defined in header ''; this is probably fixable by adding '#include ' In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/RcppCommon.h:170: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/as.h: In function 'T Rcpp::internal::as_string(SEXP, Rcpp::traits::true_type)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/as.h:63:38: error: there are no arguments to 'strlen' that depend on a template parameter, so a declaration of 'strlen' must be available [-fpermissive] 63 | return std::wstring(y, y+strlen(y)); | ^~~~~~ In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/RcppCommon.h:189: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h: In function 'SEXPREC* Rcpp::internal::make_charsexp__impl__wstring(const wchar_t*)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:45:13: error: 'wcstombs' was not declared in this scope 45 | wcstombs(buffer, data, MAXELTSIZE); | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h: In function 'SEXPREC* Rcpp::internal::make_charsexp__impl__wstring(wchar_t)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:51:13: error: 'wcstombs' was not declared in this scope 51 | wcstombs(buffer, x, MAXELTSIZE); | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h: In function 'SEXPREC* Rcpp::internal::primitive_range_wrap__impl(InputIterator, InputIterator, Rcpp::traits::true_type)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:103:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 103 | size_t size = std::distance(first, last); | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:105:50: error: 'size' was not declared in this scope 105 | Shield x(Rf_allocVector(RTYPE, size)); | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h: In function 'SEXPREC* Rcpp::internal::primitive_range_wrap__impl__nocast(InputIterator, InputIterator, std::random_access_iterator_tag)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:114:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 114 | size_t size = std::distance(first, last); | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:116:50: error: 'size' was not declared in this scope 116 | Shield x(Rf_allocVector(RTYPE, size)); | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h: In function 'SEXPREC* Rcpp::internal::primitive_range_wrap__impl__nocast(InputIterator, InputIterator, std::input_iterator_tag)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:149:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 149 | size_t size = std::distance(first, last); | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:151:50: error: 'size' was not declared in this scope 151 | Shield x(Rf_allocVector(RTYPE, size)); | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h: In function 'SEXPREC* Rcpp::internal::range_wrap_dispatch___generic(InputIterator, InputIterator)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:190:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 190 | size_t size = std::distance(first, last); | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:191:51: error: 'size' was not declared in this scope 191 | Shield x(Rf_allocVector(VECSXP, size)); | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:192:19: error: expected ';' before 'i' 192 | size_t i =0; | ^~ | ; /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:193:19: error: 'i' was not declared in this scope 193 | while(i < size) { | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h: In function 'SEXPREC* Rcpp::internal::range_wrap_dispatch___impl(InputIterator, InputIterator, Rcpp::traits::r_type_string_tag)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:237:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 237 | size_t size = std::distance(first, last); | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:238:51: error: 'size' was not declared in this scope 238 | Shield x(Rf_allocVector(STRSXP, size)); | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:239:19: error: expected ';' before 'i' 239 | size_t i = 0; | ^~ | ; /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:240:19: error: 'i' was not declared in this scope 240 | while(i < size) { | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h: In function 'SEXPREC* Rcpp::internal::range_wrap_dispatch___impl__cast(InputIterator, InputIterator, Rcpp::traits::false_type)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:262:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 262 | size_t size = std::distance(first, last); | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:264:50: error: 'size' was not declared in this scope 264 | Shield x(Rf_allocVector(RTYPE, size)); | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:268:19: error: expected ';' before 'i' 268 | size_t i =0; | ^~ | ; /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:270:20: error: 'i' was not declared in this scope 270 | for (; i x(Rf_allocVector(RTYPE, size)); | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:296:19: error: expected ';' before 'i' 296 | size_t i =0; | ^~ | ; /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:298:20: error: 'i' was not declared in this scope 298 | for (; i x(Rf_allocVector(VECSXP, size)); | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:339:19: error: expected ';' before 'i' 339 | size_t i =0; | ^~ | ; /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:342:19: error: 'i' was not declared in this scope 342 | while(i < size) { // #nocov start | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h: In function 'SEXPREC* Rcpp::internal::range_wrap_dispatch___impl(InputIterator, InputIterator, Rcpp::traits::r_type_pairstring_string_tag)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:367:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 367 | size_t size = std::distance(first, last); | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:368:51: error: 'size' was not declared in this scope 368 | Shield x(Rf_allocVector(STRSXP, size)); | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:370:24: error: expected ';' before 'i' 370 | for (size_t i = 0; i < size; i++, ++first) { | ^~ | ; /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:370:32: error: 'i' was not declared in this scope 370 | for (size_t i = 0; i < size; i++, ++first) { | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h: In function 'SEXPREC* Rcpp::internal::wrap_dispatch_unknown_iterable__logical(const T&, Rcpp::traits::true_type)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:535:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 535 | size_t size = object.size(); | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/internal/wrap.h:536:51: error: 'size' was not declared in this scope 536 | Shield x(Rf_allocVector(LGLSXP, size)); | ^~~~ In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp.h:35: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Dimension.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Dimension.h:42:29: error: 'size_t' does not name a type 42 | Dimension(const size_t& n1) : dims(1){ | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Dimension.h:1:1: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' +++ |+#include 1 | // -*- mode: C++; c-indent-level: 4; c-basic-offset: 4; indent-tabs-mode: nil; -*- /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Dimension.h:45:29: error: 'size_t' does not name a type 45 | Dimension(const size_t& n1, const size_t& n2) : dims(2){ | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Dimension.h:45:29: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Dimension.h:45:47: error: 'size_t' does not name a type 45 | Dimension(const size_t& n1, const size_t& n2) : dims(2){ | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Dimension.h:45:47: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Dimension.h:49:29: error: 'size_t' does not name a type 49 | Dimension(const size_t& n1, const size_t& n2, const size_t& n3) : dims(3){ | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Dimension.h:49:29: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Dimension.h:49:47: error: 'size_t' does not name a type 49 | Dimension(const size_t& n1, const size_t& n2, const size_t& n3) : dims(3){ | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Dimension.h:49:47: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Dimension.h:49:65: error: 'size_t' does not name a type 49 | Dimension(const size_t& n1, const size_t& n2, const size_t& n3) : dims(3){ | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Dimension.h:49:65: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h:23, from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Vector.h:51, from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp.h:40: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Subsetter.h: In member function 'void Rcpp::SubsetProxy::get_indices(Rcpp::traits::identity >)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Subsetter.h:163:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 163 | for(size_t i = 0 ; i < tmp.size() ; ++i) { | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Subsetter.h:163:28: error: 'i' was not declared in this scope; did you mean 'is'? 163 | for(size_t i = 0 ; i < tmp.size() ; ++i) { | ^ | is /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h:343:36: error: 'size_t' does not name a type 343 | inline Proxy operator()( const size_t& i) { | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h:24:1: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' 23 | #include +++ |+#include 24 | /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h:346:42: error: 'size_t' does not name a type 346 | inline const_Proxy operator()( const size_t& i) const { | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h:346:42: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h:350:28: error: 'size_t' does not name a type 350 | inline Proxy at( const size_t& i) { | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h:350:28: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h:353:34: error: 'size_t' does not name a type 353 | inline const_Proxy at( const size_t& i) const { // #nocov start | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h:353:34: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h:357:36: error: 'size_t' does not name a type 357 | inline Proxy operator()( const size_t& i, const size_t& j) { | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h:357:36: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h:357:53: error: 'size_t' does not name a type 357 | inline Proxy operator()( const size_t& i, const size_t& j) { | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h:357:53: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h:360:42: error: 'size_t' does not name a type 360 | inline const_Proxy operator()( const size_t& i, const size_t& j) const { | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h:360:42: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h:360:59: error: 'size_t' does not name a type 360 | inline const_Proxy operator()( const size_t& i, const size_t& j) const { | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Vector.h:360:59: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Vector.h:57: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Matrix.h:137:36: error: 'size_t' does not name a type 137 | inline Proxy operator()( const size_t& i, const size_t& j) { | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Matrix.h:1:1: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' +++ |+#include 1 | // -*- mode: C++; c-indent-level: 4; c-basic-offset: 4; indent-tabs-mode: nil; -*- /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Matrix.h:137:53: error: 'size_t' does not name a type 137 | inline Proxy operator()( const size_t& i, const size_t& j) { | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Matrix.h:137:53: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Matrix.h:140:42: error: 'size_t' does not name a type 140 | inline const_Proxy operator()( const size_t& i, const size_t& j) const { | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Matrix.h:140:42: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Matrix.h:140:59: error: 'size_t' does not name a type 140 | inline const_Proxy operator()( const size_t& i, const size_t& j) const { | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Matrix.h:140:59: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Matrix.h:144:28: error: 'size_t' does not name a type 144 | inline Proxy at( const size_t& i, const size_t& j) { | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Matrix.h:144:28: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Matrix.h:144:45: error: 'size_t' does not name a type 144 | inline Proxy at( const size_t& i, const size_t& j) { | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Matrix.h:144:45: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Matrix.h:147:34: error: 'size_t' does not name a type 147 | inline const_Proxy at( const size_t& i, const size_t& j) const { | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Matrix.h:147:34: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Matrix.h:147:51: error: 'size_t' does not name a type 147 | inline const_Proxy at( const size_t& i, const size_t& j) const { | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/vector/Matrix.h:147:51: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/Vector.h:68: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h: In member function 'Rcpp::String& Rcpp::String::append_wide_string(const T&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:336:41: error: there are no arguments to 'strlen' that depend on a template parameter, so a declaration of 'strlen' must be available [-fpermissive] 336 | std::wstring tmp(buf, buf + strlen(buf)); | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h: In member function 'Rcpp::String& Rcpp::String::replace_first(const char*, const char*)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:421:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 421 | size_t index = std::distance(buffer.begin(), std::search(buffer.begin(), buffer.end(), s2.begin(), s2.end())); | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:422:17: error: 'index' was not declared in this scope 422 | if (index != std::string::npos) buffer.replace(index, strlen(s), news); | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:422:67: error: 'strlen' was not declared in this scope 422 | if (index != std::string::npos) buffer.replace(index, strlen(s), news); | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:1:1: note: 'strlen' is defined in header ''; this is probably fixable by adding '#include ' +++ |+#include 1 | /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h: In member function 'Rcpp::String& Rcpp::String::replace_last(const char*, const char*)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:447:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 447 | size_t index = std::distance(buffer.begin(), std::find_end(buffer.begin(), buffer.end(), s2.begin(), s2.end())); | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:448:17: error: 'index' was not declared in this scope 448 | if (index != std::string::npos) buffer.replace(index, strlen(s), news); | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:448:67: error: 'strlen' was not declared in this scope 448 | if (index != std::string::npos) buffer.replace(index, strlen(s), news); | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:448:67: note: 'strlen' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h: In member function 'Rcpp::String& Rcpp::String::replace_all(const char*, const char*)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:478:17: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 478 | size_t index = std::distance(buffer.begin(), iter); | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:479:21: error: 'index' was not declared in this scope 479 | if (index != std::string::npos) buffer.replace(index, strlen(s), news); | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:479:71: error: 'strlen' was not declared in this scope 479 | if (index != std::string::npos) buffer.replace(index, strlen(s), news); | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:479:71: note: 'strlen' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h: In member function 'Rcpp::String::operator std::wstring() const': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:573:40: error: 'strlen' was not declared in this scope 573 | return std::wstring(s, s + strlen(s)); | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:573:40: note: 'strlen' is defined in header ''; this is probably fixable by adding '#include ' In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp.h:47: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/DottedPairImpl.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/DottedPairImpl.h:55:28: error: 'size_t' does not name a type 55 | void insert( const size_t& index, const T& object) ; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/DottedPairImpl.h:1:1: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' +++ |+#include 1 | // Copyright (C) 2013 Romain Francois /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/DottedPairImpl.h:79:28: error: 'size_t' does not name a type 79 | void remove( const size_t& index ); | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/DottedPairImpl.h:79:28: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp.h:57: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/DataFrame.h: In member function 'int Rcpp::DataFrame_Impl::nrow() const': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/DataFrame.h:82:32: error: no matching function for call to 'abs(int&)' 82 | return std::abs(INTEGER(rn)[1]); | ~~~~~~~~^~~~~~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:896:5: note: candidate: 'template _Tp std::abs(const complex<_Tp>&)' 896 | abs(const complex<_Tp>& __z) { return __complex_abs(__z); } | ^~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:896:5: note: template argument deduction/substitution failed: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/DataFrame.h:82:32: note: mismatched types 'const std::complex<_Tp>' and 'int' 82 | return std::abs(INTEGER(rn)[1]); | ~~~~~~~~^~~~~~~~~~~~~~~~ In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp.h:59: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/exceptions_impl.h: In function 'std::string Rcpp::demangler_one(const char*)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/exceptions_impl.h:54:9: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 54 | size_t last_open = buffer.find_last_of('('); | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/exceptions_impl.h:55:15: error: expected ';' before 'last_close' 55 | size_t last_close = buffer.find_last_of(')'); | ^~~~~~~~~~~ | ; /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/exceptions_impl.h:56:13: error: 'last_open' was not declared in this scope 56 | if (last_open == std::string::npos || | ^~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/exceptions_impl.h:57:13: error: 'last_close' was not declared in this scope 57 | last_close == std::string::npos) { | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/exceptions_impl.h:60:51: error: 'last_open' was not declared in this scope 60 | std::string function_name = buffer.substr(last_open + 1, last_close - last_open - 1); | ^~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/exceptions_impl.h:60:66: error: 'last_close' was not declared in this scope 60 | std::string function_name = buffer.substr(last_open + 1, last_close - last_open - 1); | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/exceptions_impl.h:62:15: error: expected ';' before 'function_plus' 62 | size_t function_plus = function_name.find_last_of('+'); | ^~~~~~~~~~~~~~ | ; /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/exceptions_impl.h:63:13: error: 'function_plus' was not declared in this scope; did you mean 'function_name'? 63 | if (function_plus != std::string::npos) { | ^~~~~~~~~~~~~ | function_name /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/exceptions_impl.h: In member function 'void Rcpp::exception::record_stack_trace()': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/exceptions_impl.h:78:15: error: 'size_t' does not name a type 78 | const size_t max_depth = 100; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/exceptions_impl.h:39:1: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' 38 | # include +++ |+#include 39 | # define RCPP_DEMANGLER_ENABLED 1 /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/exceptions_impl.h:80:27: error: 'max_depth' was not declared in this scope; did you mean 'stack_depth'? 80 | void *stack_addrs[max_depth]; | ^~~~~~~~~ | stack_depth /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/exceptions_impl.h:82:33: error: 'stack_addrs' was not declared in this scope 82 | stack_depth = backtrace(stack_addrs, max_depth); | ^~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/exceptions_impl.h:87:9: error: 'free' was not declared in this scope 87 | free(stack_strings); // malloc()ed by backtrace_symbols | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/exceptions_impl.h:39:1: note: 'free' is defined in header ''; this is probably fixable by adding '#include ' 38 | # include +++ |+#include 39 | # define RCPP_DEMANGLER_ENABLED 1 In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/date_datetime.h:25, from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp.h:64: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/Date.h: In member function 'std::string Rcpp::Date::format(const char*) const': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/Date.h:111:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 111 | size_t res = ::strftime(txt, 31, fmt, &temp); | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/Date.h:112:17: error: 'res' was not declared in this scope 112 | if (res == 0) { | ^~~ In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/date_datetime.h:27: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/newDateVector.h: In member function 'std::vector > Rcpp::newDateVector::getDates() const': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/newDateVector.h:40:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 40 | size_t n = this->size(); | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/newDateVector.h:41:33: error: 'n' was not declared in this scope 41 | std::vector v(n); | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/newDateVector.h:42:25: error: expected ';' before 'i' 42 | for (size_t i=0; i(std::floor(m_dt)); | ~~~~~~~~~~^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:257:3: note: candidate: 'constexpr float std::floor(float)' 257 | floor(float __x) | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:261:3: note: candidate: 'constexpr long double std::floor(long double)' 261 | floor(long double __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/Datetime.h:79:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 79 | size_t res = ::strftime(txtiso, 63, fmt, &temp); | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/Datetime.h:80:17: error: 'res' was not declared in this scope 80 | if (res == 0) { | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/Datetime.h:83:25: error: '::snprintf' has not been declared 83 | res = ::snprintf(txtsec, 63, "%s.%06d", txtiso, m_us); | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/Datetime.h:1:1: note: 'snprintf' is defined in header ''; this is probably fixable by adding '#include ' +++ |+#include 1 | // -*- mode: C++; c-indent-level: 4; c-basic-offset: 4; indent-tabs-mode: nil; -*- /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/Datetime.h: In member function 'void Rcpp::Datetime::update_tm()': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/Datetime.h:102:39: error: call of overloaded 'floor(double&)' is ambiguous 102 | double dt = std::floor(m_dt); | ~~~~~~~~~~^~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:257:3: note: candidate: 'constexpr float std::floor(float)' 257 | floor(float __x) | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:261:3: note: candidate: 'constexpr long double std::floor(long double)' 261 | floor(long double __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/Datetime.h: In function 'Rcpp::Datetime Rcpp::operator+(const Datetime&, double)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/Datetime.h:141:31: error: call of overloaded 'floor(double&)' is ambiguous 141 | double dt = std::floor(newdt.m_dt); | ~~~~~~~~~~^~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:257:3: note: candidate: 'constexpr float std::floor(float)' 257 | floor(float __x) | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:261:3: note: candidate: 'constexpr long double std::floor(long double)' 261 | floor(long double __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/Datetime.h: In function 'Rcpp::Datetime Rcpp::operator+(const Datetime&, int)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/Datetime.h:151:31: error: call of overloaded 'floor(double&)' is ambiguous 151 | double dt = std::floor(newdt.m_dt); | ~~~~~~~~~~^~~~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:257:3: note: candidate: 'constexpr float std::floor(float)' 257 | floor(float __x) | ^~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:261:3: note: candidate: 'constexpr long double std::floor(long double)' 261 | floor(long double __x) | ^~~~~ In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/date_datetime.h:31: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/newDatetimeVector.h: In member function 'std::vector > Rcpp::newDatetimeVector::getDatetimes() const': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/newDatetimeVector.h:48:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 48 | size_t n = this->size(); | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/newDatetimeVector.h:49:37: error: 'n' was not declared in this scope 49 | std::vector v(n); | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/date_datetime/newDatetimeVector.h:50:25: error: expected ';' before 'i' 50 | for (size_t i=0; i::newInstance(SEXPREC**, int)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:138:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 138 | size_t n = constructors.size() ; | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:139:25: error: expected ';' before 'i' 139 | for( size_t i=0; i::has_default_constructor()': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:164:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 164 | size_t n = constructors.size() ; | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:166:25: error: expected ';' before 'i' 166 | for( size_t i=0; i::invoke(SEXP, SEXP, SEXPREC**, int)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:184:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 184 | size_t n = mets->size() ; | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:187:25: error: expected ';' before 'i' 187 | for( size_t i=0; i::invoke_void(SEXP, SEXP, SEXPREC**, int)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:211:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 211 | size_t n = mets->size() ; | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:214:25: error: expected ';' before 'i' 214 | for( size_t i=0; i::invoke_notvoid(SEXP, SEXP, SEXPREC**, int)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:233:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 233 | size_t n = mets->size() ; | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:236:25: error: expected ';' before 'i' 236 | for( size_t i=0; i::method_names()': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:328:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 328 | size_t n = 0 ; | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:329:20: error: expected ';' before 's' 329 | size_t s = vec_methods.size() ; | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:331:25: error: expected ';' before 'i' 331 | for( size_t i=0; isecond)->size() ; | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:334:39: error: 'n' was not declared in this scope 334 | Rcpp::CharacterVector out(n) ; | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:336:20: error: expected ';' before 'k' 336 | size_t k = 0 ; | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:337:25: error: expected ';' before 'i' 337 | for( size_t i=0; i::methods_arity()': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:348:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 348 | size_t n = 0 ; | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:349:20: error: expected ';' before 's' 349 | size_t s = vec_methods.size() ; | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:351:25: error: expected ';' before 'i' 351 | for( size_t i=0; isecond)->size() ; | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:354:42: error: 'n' was not declared in this scope 354 | Rcpp::CharacterVector mnames(n) ; | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:357:20: error: expected ';' before 'k' 357 | size_t k = 0 ; | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:358:25: error: expected ';' before 'i' 358 | for( size_t i=0; i::methods_voidness()': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:372:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 372 | size_t n = 0 ; | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:373:20: error: expected ';' before 's' 373 | size_t s = vec_methods.size() ; | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:375:25: error: expected ';' before 'i' 375 | for( size_t i=0; isecond)->size() ; | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:378:42: error: 'n' was not declared in this scope 378 | Rcpp::CharacterVector mnames(n) ; | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:381:20: error: expected ';' before 'k' 381 | size_t k = 0 ; | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:382:25: error: expected ';' before 'i' 382 | for( size_t i=0; i::property_names()': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:397:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 397 | size_t n = properties.size() ; | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:398:39: error: 'n' was not declared in this scope 398 | Rcpp::CharacterVector out(n) ; | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:400:25: error: expected ';' before 'i' 400 | for( size_t i=0; i::property_classes()': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:407:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 407 | size_t n = properties.size() ; | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:408:42: error: 'n' was not declared in this scope 408 | Rcpp::CharacterVector pnames(n) ; | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:411:25: error: expected ';' before 'i' 411 | for( size_t i=0; i::complete()': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:420:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 420 | size_t n = vec_methods.size() - specials ; | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:421:20: error: expected ';' before 'ntotal' 421 | size_t ntotal = n + properties.size() ; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:422:39: error: 'ntotal' was not declared in this scope 422 | Rcpp::CharacterVector out(ntotal) ; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:425:20: error: expected ';' before 'i' 425 | size_t i=0 ; | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:426:20: error: 'i' was not declared in this scope; did you mean 'is'? 426 | for( ; i::fields(const Rcpp::class_Base::XP_Class&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:461:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 461 | size_t n = properties.size() ; | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:462:42: error: 'n' was not declared in this scope 462 | Rcpp::CharacterVector pnames(n) ; | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:465:25: error: expected ';' before 'i' 465 | for( size_t i=0; i::getMethods(const Rcpp::class_Base::XP_Class&, std::string&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:478:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 478 | size_t n = vec_methods.size() ; | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:479:42: error: 'n' was not declared in this scope 479 | Rcpp::CharacterVector mnames(n) ; | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:483:25: error: expected ';' before 'i' 483 | for( size_t i=0; i::getConstructors(const Rcpp::class_Base::XP_Class&, std::string&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:493:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 493 | size_t n = constructors.size() ; | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:494:28: error: 'n' was not declared in this scope 494 | Rcpp::List out(n) ; | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/module/class.h:496:25: error: expected ';' before 'i' 496 | for( size_t i=0; i \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' declared here 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: error: '::exp' has not been declared; did you mean 'std::exp'? 25 | VECTORIZED_MATH_1(exp,::exp) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' declared here 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:1: note: in expansion of macro 'VECTORIZED_MATH_1' 25 | VECTORIZED_MATH_1(exp,::exp) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::exp(const VectorBase<14, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: error: '::exp' has not been declared 25 | VECTORIZED_MATH_1(exp,::exp) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: note: suggested alternatives: 25 | VECTORIZED_MATH_1(exp,::exp) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:19: note: 'Rcpp::exp' 25 | VECTORIZED_MATH_1(exp,::exp) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: error: '::exp' has not been declared 25 | VECTORIZED_MATH_1(exp,::exp) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: note: suggested alternatives: 25 | VECTORIZED_MATH_1(exp,::exp) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:19: note: 'Rcpp::exp' 25 | VECTORIZED_MATH_1(exp,::exp) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:1: note: in expansion of macro 'VECTORIZED_MATH_1' 25 | VECTORIZED_MATH_1(exp,::exp) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: error: '::exp' has not been declared 25 | VECTORIZED_MATH_1(exp,::exp) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: note: suggested alternatives: 25 | VECTORIZED_MATH_1(exp,::exp) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:19: note: 'Rcpp::exp' 25 | VECTORIZED_MATH_1(exp,::exp) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: error: '::exp' has not been declared 25 | VECTORIZED_MATH_1(exp,::exp) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: note: suggested alternatives: 25 | VECTORIZED_MATH_1(exp,::exp) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:19: note: 'Rcpp::exp' 25 | VECTORIZED_MATH_1(exp,::exp) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:1: note: in expansion of macro 'VECTORIZED_MATH_1' 25 | VECTORIZED_MATH_1(exp,::exp) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: error: '::exp' has not been declared 25 | VECTORIZED_MATH_1(exp,::exp) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: note: suggested alternatives: 25 | VECTORIZED_MATH_1(exp,::exp) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:19: note: 'Rcpp::exp' 25 | VECTORIZED_MATH_1(exp,::exp) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1' 91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: error: '::exp' has not been declared 25 | VECTORIZED_MATH_1(exp,::exp) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: note: suggested alternatives: 25 | VECTORIZED_MATH_1(exp,::exp) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:19: note: 'Rcpp::exp' 25 | VECTORIZED_MATH_1(exp,::exp) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1' 91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:1: note: in expansion of macro 'VECTORIZED_MATH_1' 25 | VECTORIZED_MATH_1(exp,::exp) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::exp(const VectorBase<13, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: error: '::exp' has not been declared 25 | VECTORIZED_MATH_1(exp,::exp) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: note: suggested alternatives: 25 | VECTORIZED_MATH_1(exp,::exp) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:19: note: 'Rcpp::exp' 25 | VECTORIZED_MATH_1(exp,::exp) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: error: '::exp' has not been declared 25 | VECTORIZED_MATH_1(exp,::exp) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:25: note: suggested alternatives: 25 | VECTORIZED_MATH_1(exp,::exp) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:19: note: 'Rcpp::exp' 25 | VECTORIZED_MATH_1(exp,::exp) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:1: note: in expansion of macro 'VECTORIZED_MATH_1' 25 | VECTORIZED_MATH_1(exp,::exp) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: error: '::acos' has not been declared; did you mean 'std::acos'? 26 | VECTORIZED_MATH_1(acos,::acos) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2221:5: note: 'std::acos' declared here 2221 | acos(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: error: '::acos' has not been declared; did you mean 'std::acos'? 26 | VECTORIZED_MATH_1(acos,::acos) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2221:5: note: 'std::acos' declared here 2221 | acos(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:1: note: in expansion of macro 'VECTORIZED_MATH_1' 26 | VECTORIZED_MATH_1(acos,::acos) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::acos(const VectorBase<14, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: error: '::acos' has not been declared 26 | VECTORIZED_MATH_1(acos,::acos) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: note: suggested alternatives: 26 | VECTORIZED_MATH_1(acos,::acos) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2221:5: note: 'std::acos' 2221 | acos(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:19: note: 'Rcpp::acos' 26 | VECTORIZED_MATH_1(acos,::acos) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: error: '::acos' has not been declared 26 | VECTORIZED_MATH_1(acos,::acos) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: note: suggested alternatives: 26 | VECTORIZED_MATH_1(acos,::acos) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2221:5: note: 'std::acos' 2221 | acos(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:19: note: 'Rcpp::acos' 26 | VECTORIZED_MATH_1(acos,::acos) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:1: note: in expansion of macro 'VECTORIZED_MATH_1' 26 | VECTORIZED_MATH_1(acos,::acos) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: error: '::acos' has not been declared 26 | VECTORIZED_MATH_1(acos,::acos) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: note: suggested alternatives: 26 | VECTORIZED_MATH_1(acos,::acos) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2221:5: note: 'std::acos' 2221 | acos(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:19: note: 'Rcpp::acos' 26 | VECTORIZED_MATH_1(acos,::acos) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: error: '::acos' has not been declared 26 | VECTORIZED_MATH_1(acos,::acos) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: note: suggested alternatives: 26 | VECTORIZED_MATH_1(acos,::acos) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2221:5: note: 'std::acos' 2221 | acos(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:19: note: 'Rcpp::acos' 26 | VECTORIZED_MATH_1(acos,::acos) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:1: note: in expansion of macro 'VECTORIZED_MATH_1' 26 | VECTORIZED_MATH_1(acos,::acos) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: error: '::acos' has not been declared 26 | VECTORIZED_MATH_1(acos,::acos) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: note: suggested alternatives: 26 | VECTORIZED_MATH_1(acos,::acos) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2221:5: note: 'std::acos' 2221 | acos(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:19: note: 'Rcpp::acos' 26 | VECTORIZED_MATH_1(acos,::acos) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1' 91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: error: '::acos' has not been declared 26 | VECTORIZED_MATH_1(acos,::acos) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: note: suggested alternatives: 26 | VECTORIZED_MATH_1(acos,::acos) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2221:5: note: 'std::acos' 2221 | acos(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:19: note: 'Rcpp::acos' 26 | VECTORIZED_MATH_1(acos,::acos) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1' 91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:1: note: in expansion of macro 'VECTORIZED_MATH_1' 26 | VECTORIZED_MATH_1(acos,::acos) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::acos(const VectorBase<13, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: error: '::acos' has not been declared 26 | VECTORIZED_MATH_1(acos,::acos) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: note: suggested alternatives: 26 | VECTORIZED_MATH_1(acos,::acos) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2221:5: note: 'std::acos' 2221 | acos(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:19: note: 'Rcpp::acos' 26 | VECTORIZED_MATH_1(acos,::acos) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: error: '::acos' has not been declared 26 | VECTORIZED_MATH_1(acos,::acos) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:26: note: suggested alternatives: 26 | VECTORIZED_MATH_1(acos,::acos) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2221:5: note: 'std::acos' 2221 | acos(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:19: note: 'Rcpp::acos' 26 | VECTORIZED_MATH_1(acos,::acos) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:26:1: note: in expansion of macro 'VECTORIZED_MATH_1' 26 | VECTORIZED_MATH_1(acos,::acos) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: error: '::asin' has not been declared; did you mean 'std::asin'? 27 | VECTORIZED_MATH_1(asin,::asin) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2257:5: note: 'std::asin' declared here 2257 | asin(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: error: '::asin' has not been declared; did you mean 'std::asin'? 27 | VECTORIZED_MATH_1(asin,::asin) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2257:5: note: 'std::asin' declared here 2257 | asin(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:1: note: in expansion of macro 'VECTORIZED_MATH_1' 27 | VECTORIZED_MATH_1(asin,::asin) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::asin(const VectorBase<14, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: error: '::asin' has not been declared 27 | VECTORIZED_MATH_1(asin,::asin) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: note: suggested alternatives: 27 | VECTORIZED_MATH_1(asin,::asin) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2257:5: note: 'std::asin' 2257 | asin(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:19: note: 'Rcpp::asin' 27 | VECTORIZED_MATH_1(asin,::asin) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: error: '::asin' has not been declared 27 | VECTORIZED_MATH_1(asin,::asin) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: note: suggested alternatives: 27 | VECTORIZED_MATH_1(asin,::asin) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2257:5: note: 'std::asin' 2257 | asin(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:19: note: 'Rcpp::asin' 27 | VECTORIZED_MATH_1(asin,::asin) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:1: note: in expansion of macro 'VECTORIZED_MATH_1' 27 | VECTORIZED_MATH_1(asin,::asin) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: error: '::asin' has not been declared 27 | VECTORIZED_MATH_1(asin,::asin) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: note: suggested alternatives: 27 | VECTORIZED_MATH_1(asin,::asin) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2257:5: note: 'std::asin' 2257 | asin(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:19: note: 'Rcpp::asin' 27 | VECTORIZED_MATH_1(asin,::asin) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: error: '::asin' has not been declared 27 | VECTORIZED_MATH_1(asin,::asin) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: note: suggested alternatives: 27 | VECTORIZED_MATH_1(asin,::asin) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2257:5: note: 'std::asin' 2257 | asin(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:19: note: 'Rcpp::asin' 27 | VECTORIZED_MATH_1(asin,::asin) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:1: note: in expansion of macro 'VECTORIZED_MATH_1' 27 | VECTORIZED_MATH_1(asin,::asin) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: error: '::asin' has not been declared 27 | VECTORIZED_MATH_1(asin,::asin) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: note: suggested alternatives: 27 | VECTORIZED_MATH_1(asin,::asin) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2257:5: note: 'std::asin' 2257 | asin(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:19: note: 'Rcpp::asin' 27 | VECTORIZED_MATH_1(asin,::asin) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1' 91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: error: '::asin' has not been declared 27 | VECTORIZED_MATH_1(asin,::asin) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: note: suggested alternatives: 27 | VECTORIZED_MATH_1(asin,::asin) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2257:5: note: 'std::asin' 2257 | asin(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:19: note: 'Rcpp::asin' 27 | VECTORIZED_MATH_1(asin,::asin) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1' 91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:1: note: in expansion of macro 'VECTORIZED_MATH_1' 27 | VECTORIZED_MATH_1(asin,::asin) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::asin(const VectorBase<13, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: error: '::asin' has not been declared 27 | VECTORIZED_MATH_1(asin,::asin) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: note: suggested alternatives: 27 | VECTORIZED_MATH_1(asin,::asin) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2257:5: note: 'std::asin' 2257 | asin(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:19: note: 'Rcpp::asin' 27 | VECTORIZED_MATH_1(asin,::asin) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: error: '::asin' has not been declared 27 | VECTORIZED_MATH_1(asin,::asin) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:26: note: suggested alternatives: 27 | VECTORIZED_MATH_1(asin,::asin) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2257:5: note: 'std::asin' 2257 | asin(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:19: note: 'Rcpp::asin' 27 | VECTORIZED_MATH_1(asin,::asin) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:1: note: in expansion of macro 'VECTORIZED_MATH_1' 27 | VECTORIZED_MATH_1(asin,::asin) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: error: '::atan' has not been declared; did you mean 'std::atan'? 28 | VECTORIZED_MATH_1(atan,::atan) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2301:5: note: 'std::atan' declared here 2301 | atan(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: error: '::atan' has not been declared; did you mean 'std::atan'? 28 | VECTORIZED_MATH_1(atan,::atan) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2301:5: note: 'std::atan' declared here 2301 | atan(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:1: note: in expansion of macro 'VECTORIZED_MATH_1' 28 | VECTORIZED_MATH_1(atan,::atan) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::atan(const VectorBase<14, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: error: '::atan' has not been declared 28 | VECTORIZED_MATH_1(atan,::atan) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: note: suggested alternatives: 28 | VECTORIZED_MATH_1(atan,::atan) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2301:5: note: 'std::atan' 2301 | atan(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:19: note: 'Rcpp::atan' 28 | VECTORIZED_MATH_1(atan,::atan) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: error: '::atan' has not been declared 28 | VECTORIZED_MATH_1(atan,::atan) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: note: suggested alternatives: 28 | VECTORIZED_MATH_1(atan,::atan) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2301:5: note: 'std::atan' 2301 | atan(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:19: note: 'Rcpp::atan' 28 | VECTORIZED_MATH_1(atan,::atan) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:1: note: in expansion of macro 'VECTORIZED_MATH_1' 28 | VECTORIZED_MATH_1(atan,::atan) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: error: '::atan' has not been declared 28 | VECTORIZED_MATH_1(atan,::atan) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: note: suggested alternatives: 28 | VECTORIZED_MATH_1(atan,::atan) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2301:5: note: 'std::atan' 2301 | atan(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:19: note: 'Rcpp::atan' 28 | VECTORIZED_MATH_1(atan,::atan) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: error: '::atan' has not been declared 28 | VECTORIZED_MATH_1(atan,::atan) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: note: suggested alternatives: 28 | VECTORIZED_MATH_1(atan,::atan) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2301:5: note: 'std::atan' 2301 | atan(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:19: note: 'Rcpp::atan' 28 | VECTORIZED_MATH_1(atan,::atan) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:1: note: in expansion of macro 'VECTORIZED_MATH_1' 28 | VECTORIZED_MATH_1(atan,::atan) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: error: '::atan' has not been declared 28 | VECTORIZED_MATH_1(atan,::atan) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: note: suggested alternatives: 28 | VECTORIZED_MATH_1(atan,::atan) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2301:5: note: 'std::atan' 2301 | atan(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:19: note: 'Rcpp::atan' 28 | VECTORIZED_MATH_1(atan,::atan) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1' 91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: error: '::atan' has not been declared 28 | VECTORIZED_MATH_1(atan,::atan) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: note: suggested alternatives: 28 | VECTORIZED_MATH_1(atan,::atan) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2301:5: note: 'std::atan' 2301 | atan(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:19: note: 'Rcpp::atan' 28 | VECTORIZED_MATH_1(atan,::atan) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1' 91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:1: note: in expansion of macro 'VECTORIZED_MATH_1' 28 | VECTORIZED_MATH_1(atan,::atan) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::atan(const VectorBase<13, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: error: '::atan' has not been declared 28 | VECTORIZED_MATH_1(atan,::atan) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: note: suggested alternatives: 28 | VECTORIZED_MATH_1(atan,::atan) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2301:5: note: 'std::atan' 2301 | atan(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:19: note: 'Rcpp::atan' 28 | VECTORIZED_MATH_1(atan,::atan) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: error: '::atan' has not been declared 28 | VECTORIZED_MATH_1(atan,::atan) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:26: note: suggested alternatives: 28 | VECTORIZED_MATH_1(atan,::atan) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2301:5: note: 'std::atan' 2301 | atan(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:19: note: 'Rcpp::atan' 28 | VECTORIZED_MATH_1(atan,::atan) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:1: note: in expansion of macro 'VECTORIZED_MATH_1' 28 | VECTORIZED_MATH_1(atan,::atan) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: error: '::ceil' has not been declared; did you mean 'std::ceil'? 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil' declared here 174 | ceil(_Tp __x) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: error: '::ceil' has not been declared; did you mean 'std::ceil'? 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil' declared here 174 | ceil(_Tp __x) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:1: note: in expansion of macro 'VECTORIZED_MATH_1' 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::ceil(const VectorBase<14, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: error: '::ceil' has not been declared 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: note: suggested alternatives: 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil' 174 | ceil(_Tp __x) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil' 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: error: '::ceil' has not been declared 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: note: suggested alternatives: 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil' 174 | ceil(_Tp __x) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil' 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:1: note: in expansion of macro 'VECTORIZED_MATH_1' 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: error: '::ceil' has not been declared 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: note: suggested alternatives: 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil' 174 | ceil(_Tp __x) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil' 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: error: '::ceil' has not been declared 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: note: suggested alternatives: 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil' 174 | ceil(_Tp __x) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil' 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:1: note: in expansion of macro 'VECTORIZED_MATH_1' 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: error: '::ceil' has not been declared 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: note: suggested alternatives: 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil' 174 | ceil(_Tp __x) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil' 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1' 91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: error: '::ceil' has not been declared 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: note: suggested alternatives: 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil' 174 | ceil(_Tp __x) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil' 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1' 91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:1: note: in expansion of macro 'VECTORIZED_MATH_1' 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::ceil(const VectorBase<13, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: error: '::ceil' has not been declared 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: note: suggested alternatives: 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil' 174 | ceil(_Tp __x) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil' 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: error: '::ceil' has not been declared 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:26: note: suggested alternatives: 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil' 174 | ceil(_Tp __x) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil' 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:1: note: in expansion of macro 'VECTORIZED_MATH_1' 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: error: '::ceil' has not been declared 30 | VECTORIZED_MATH_1(ceiling,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: note: suggested alternatives: 30 | VECTORIZED_MATH_1(ceiling,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil' 174 | ceil(_Tp __x) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil' 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: error: '::ceil' has not been declared 30 | VECTORIZED_MATH_1(ceiling,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: note: suggested alternatives: 30 | VECTORIZED_MATH_1(ceiling,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil' 174 | ceil(_Tp __x) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil' 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:1: note: in expansion of macro 'VECTORIZED_MATH_1' 30 | VECTORIZED_MATH_1(ceiling,::ceil) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::ceiling(const VectorBase<14, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: error: '::ceil' has not been declared 30 | VECTORIZED_MATH_1(ceiling,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: note: suggested alternatives: 30 | VECTORIZED_MATH_1(ceiling,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil' 174 | ceil(_Tp __x) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil' 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: error: '::ceil' has not been declared 30 | VECTORIZED_MATH_1(ceiling,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: note: suggested alternatives: 30 | VECTORIZED_MATH_1(ceiling,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil' 174 | ceil(_Tp __x) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil' 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:1: note: in expansion of macro 'VECTORIZED_MATH_1' 30 | VECTORIZED_MATH_1(ceiling,::ceil) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: error: '::ceil' has not been declared 30 | VECTORIZED_MATH_1(ceiling,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: note: suggested alternatives: 30 | VECTORIZED_MATH_1(ceiling,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil' 174 | ceil(_Tp __x) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil' 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: error: '::ceil' has not been declared 30 | VECTORIZED_MATH_1(ceiling,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: note: suggested alternatives: 30 | VECTORIZED_MATH_1(ceiling,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil' 174 | ceil(_Tp __x) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil' 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:1: note: in expansion of macro 'VECTORIZED_MATH_1' 30 | VECTORIZED_MATH_1(ceiling,::ceil) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: error: '::ceil' has not been declared 30 | VECTORIZED_MATH_1(ceiling,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: note: suggested alternatives: 30 | VECTORIZED_MATH_1(ceiling,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil' 174 | ceil(_Tp __x) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil' 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: error: '::ceil' has not been declared 30 | VECTORIZED_MATH_1(ceiling,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: note: suggested alternatives: 30 | VECTORIZED_MATH_1(ceiling,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil' 174 | ceil(_Tp __x) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil' 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:1: note: in expansion of macro 'VECTORIZED_MATH_1' 30 | VECTORIZED_MATH_1(ceiling,::ceil) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::ceiling(const VectorBase<13, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: error: '::ceil' has not been declared 30 | VECTORIZED_MATH_1(ceiling,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: note: suggested alternatives: 30 | VECTORIZED_MATH_1(ceiling,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil' 174 | ceil(_Tp __x) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil' 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: error: '::ceil' has not been declared 30 | VECTORIZED_MATH_1(ceiling,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:29: note: suggested alternatives: 30 | VECTORIZED_MATH_1(ceiling,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:174:5: note: 'std::ceil' 174 | ceil(_Tp __x) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:29:19: note: 'Rcpp::ceil' 29 | VECTORIZED_MATH_1(ceil,::ceil) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:30:1: note: in expansion of macro 'VECTORIZED_MATH_1' 30 | VECTORIZED_MATH_1(ceiling,::ceil) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: error: '::cos' has not been declared; did you mean 'std::cos'? 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1007:5: note: 'std::cos' declared here 1007 | cos(const complex<_Tp>& __z) { return __complex_cos(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: error: '::cos' has not been declared; did you mean 'std::cos'? 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1007:5: note: 'std::cos' declared here 1007 | cos(const complex<_Tp>& __z) { return __complex_cos(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:1: note: in expansion of macro 'VECTORIZED_MATH_1' 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::cos(const VectorBase<14, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: error: '::cos' has not been declared 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: note: suggested alternatives: 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1007:5: note: 'std::cos' 1007 | cos(const complex<_Tp>& __z) { return __complex_cos(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:19: note: 'Rcpp::cos' 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: error: '::cos' has not been declared 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: note: suggested alternatives: 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1007:5: note: 'std::cos' 1007 | cos(const complex<_Tp>& __z) { return __complex_cos(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:19: note: 'Rcpp::cos' 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:1: note: in expansion of macro 'VECTORIZED_MATH_1' 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: error: '::cos' has not been declared 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: note: suggested alternatives: 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1007:5: note: 'std::cos' 1007 | cos(const complex<_Tp>& __z) { return __complex_cos(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:19: note: 'Rcpp::cos' 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: error: '::cos' has not been declared 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: note: suggested alternatives: 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1007:5: note: 'std::cos' 1007 | cos(const complex<_Tp>& __z) { return __complex_cos(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:19: note: 'Rcpp::cos' 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:1: note: in expansion of macro 'VECTORIZED_MATH_1' 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: error: '::cos' has not been declared 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: note: suggested alternatives: 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1007:5: note: 'std::cos' 1007 | cos(const complex<_Tp>& __z) { return __complex_cos(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:19: note: 'Rcpp::cos' 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1' 91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: error: '::cos' has not been declared 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: note: suggested alternatives: 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1007:5: note: 'std::cos' 1007 | cos(const complex<_Tp>& __z) { return __complex_cos(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:19: note: 'Rcpp::cos' 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1' 91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:1: note: in expansion of macro 'VECTORIZED_MATH_1' 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::cos(const VectorBase<13, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: error: '::cos' has not been declared 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: note: suggested alternatives: 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1007:5: note: 'std::cos' 1007 | cos(const complex<_Tp>& __z) { return __complex_cos(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:19: note: 'Rcpp::cos' 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: error: '::cos' has not been declared 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:25: note: suggested alternatives: 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1007:5: note: 'std::cos' 1007 | cos(const complex<_Tp>& __z) { return __complex_cos(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:19: note: 'Rcpp::cos' 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:1: note: in expansion of macro 'VECTORIZED_MATH_1' 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: error: '::cosh' has not been declared; did you mean 'std::cosh'? 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1037:5: note: 'std::cosh' declared here 1037 | cosh(const complex<_Tp>& __z) { return __complex_cosh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: error: '::cosh' has not been declared; did you mean 'std::cosh'? 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1037:5: note: 'std::cosh' declared here 1037 | cosh(const complex<_Tp>& __z) { return __complex_cosh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:1: note: in expansion of macro 'VECTORIZED_MATH_1' 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::cosh(const VectorBase<14, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: error: '::cosh' has not been declared 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: note: suggested alternatives: 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1037:5: note: 'std::cosh' 1037 | cosh(const complex<_Tp>& __z) { return __complex_cosh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:19: note: 'Rcpp::cosh' 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: error: '::cosh' has not been declared 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: note: suggested alternatives: 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1037:5: note: 'std::cosh' 1037 | cosh(const complex<_Tp>& __z) { return __complex_cosh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:19: note: 'Rcpp::cosh' 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:1: note: in expansion of macro 'VECTORIZED_MATH_1' 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: error: '::cosh' has not been declared 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: note: suggested alternatives: 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1037:5: note: 'std::cosh' 1037 | cosh(const complex<_Tp>& __z) { return __complex_cosh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:19: note: 'Rcpp::cosh' 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: error: '::cosh' has not been declared 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: note: suggested alternatives: 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1037:5: note: 'std::cosh' 1037 | cosh(const complex<_Tp>& __z) { return __complex_cosh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:19: note: 'Rcpp::cosh' 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:1: note: in expansion of macro 'VECTORIZED_MATH_1' 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: error: '::cosh' has not been declared 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: note: suggested alternatives: 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1037:5: note: 'std::cosh' 1037 | cosh(const complex<_Tp>& __z) { return __complex_cosh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:19: note: 'Rcpp::cosh' 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1' 91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: error: '::cosh' has not been declared 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: note: suggested alternatives: 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1037:5: note: 'std::cosh' 1037 | cosh(const complex<_Tp>& __z) { return __complex_cosh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:19: note: 'Rcpp::cosh' 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1' 91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:1: note: in expansion of macro 'VECTORIZED_MATH_1' 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::cosh(const VectorBase<13, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: error: '::cosh' has not been declared 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: note: suggested alternatives: 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1037:5: note: 'std::cosh' 1037 | cosh(const complex<_Tp>& __z) { return __complex_cosh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:19: note: 'Rcpp::cosh' 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: error: '::cosh' has not been declared 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:26: note: suggested alternatives: 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1037:5: note: 'std::cosh' 1037 | cosh(const complex<_Tp>& __z) { return __complex_cosh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:19: note: 'Rcpp::cosh' 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:1: note: in expansion of macro 'VECTORIZED_MATH_1' 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: error: '::floor' has not been declared; did you mean 'std::floor'? 33 | VECTORIZED_MATH_1(floor,::floor) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:269:5: note: 'std::floor' declared here 269 | floor(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: error: '::floor' has not been declared; did you mean 'std::floor'? 33 | VECTORIZED_MATH_1(floor,::floor) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:269:5: note: 'std::floor' declared here 269 | floor(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:1: note: in expansion of macro 'VECTORIZED_MATH_1' 33 | VECTORIZED_MATH_1(floor,::floor) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::floor(const VectorBase<14, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: error: '::floor' has not been declared 33 | VECTORIZED_MATH_1(floor,::floor) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: note: suggested alternatives: 33 | VECTORIZED_MATH_1(floor,::floor) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:269:5: note: 'std::floor' 269 | floor(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:19: note: 'Rcpp::floor' 33 | VECTORIZED_MATH_1(floor,::floor) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: error: '::floor' has not been declared 33 | VECTORIZED_MATH_1(floor,::floor) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: note: suggested alternatives: 33 | VECTORIZED_MATH_1(floor,::floor) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:269:5: note: 'std::floor' 269 | floor(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:19: note: 'Rcpp::floor' 33 | VECTORIZED_MATH_1(floor,::floor) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:1: note: in expansion of macro 'VECTORIZED_MATH_1' 33 | VECTORIZED_MATH_1(floor,::floor) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: error: '::floor' has not been declared 33 | VECTORIZED_MATH_1(floor,::floor) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: note: suggested alternatives: 33 | VECTORIZED_MATH_1(floor,::floor) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:269:5: note: 'std::floor' 269 | floor(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:19: note: 'Rcpp::floor' 33 | VECTORIZED_MATH_1(floor,::floor) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: error: '::floor' has not been declared 33 | VECTORIZED_MATH_1(floor,::floor) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: note: suggested alternatives: 33 | VECTORIZED_MATH_1(floor,::floor) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:269:5: note: 'std::floor' 269 | floor(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:19: note: 'Rcpp::floor' 33 | VECTORIZED_MATH_1(floor,::floor) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:1: note: in expansion of macro 'VECTORIZED_MATH_1' 33 | VECTORIZED_MATH_1(floor,::floor) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: error: '::floor' has not been declared 33 | VECTORIZED_MATH_1(floor,::floor) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: note: suggested alternatives: 33 | VECTORIZED_MATH_1(floor,::floor) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:269:5: note: 'std::floor' 269 | floor(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:19: note: 'Rcpp::floor' 33 | VECTORIZED_MATH_1(floor,::floor) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1' 91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: error: '::floor' has not been declared 33 | VECTORIZED_MATH_1(floor,::floor) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: note: suggested alternatives: 33 | VECTORIZED_MATH_1(floor,::floor) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:269:5: note: 'std::floor' 269 | floor(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:19: note: 'Rcpp::floor' 33 | VECTORIZED_MATH_1(floor,::floor) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1' 91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:1: note: in expansion of macro 'VECTORIZED_MATH_1' 33 | VECTORIZED_MATH_1(floor,::floor) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::floor(const VectorBase<13, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: error: '::floor' has not been declared 33 | VECTORIZED_MATH_1(floor,::floor) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: note: suggested alternatives: 33 | VECTORIZED_MATH_1(floor,::floor) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:269:5: note: 'std::floor' 269 | floor(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:19: note: 'Rcpp::floor' 33 | VECTORIZED_MATH_1(floor,::floor) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: error: '::floor' has not been declared 33 | VECTORIZED_MATH_1(floor,::floor) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:27: note: suggested alternatives: 33 | VECTORIZED_MATH_1(floor,::floor) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:269:5: note: 'std::floor' 269 | floor(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:19: note: 'Rcpp::floor' 33 | VECTORIZED_MATH_1(floor,::floor) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:33:1: note: in expansion of macro 'VECTORIZED_MATH_1' 33 | VECTORIZED_MATH_1(floor,::floor) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: error: '::log' has not been declared; did you mean 'std::log'? 34 | VECTORIZED_MATH_1(log,::log) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' declared here 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: error: '::log' has not been declared; did you mean 'std::log'? 34 | VECTORIZED_MATH_1(log,::log) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' declared here 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:1: note: in expansion of macro 'VECTORIZED_MATH_1' 34 | VECTORIZED_MATH_1(log,::log) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::log(const VectorBase<14, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: error: '::log' has not been declared 34 | VECTORIZED_MATH_1(log,::log) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: note: suggested alternatives: 34 | VECTORIZED_MATH_1(log,::log) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:19: note: 'Rcpp::log' 34 | VECTORIZED_MATH_1(log,::log) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: error: '::log' has not been declared 34 | VECTORIZED_MATH_1(log,::log) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: note: suggested alternatives: 34 | VECTORIZED_MATH_1(log,::log) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:19: note: 'Rcpp::log' 34 | VECTORIZED_MATH_1(log,::log) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:1: note: in expansion of macro 'VECTORIZED_MATH_1' 34 | VECTORIZED_MATH_1(log,::log) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: error: '::log' has not been declared 34 | VECTORIZED_MATH_1(log,::log) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: note: suggested alternatives: 34 | VECTORIZED_MATH_1(log,::log) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:19: note: 'Rcpp::log' 34 | VECTORIZED_MATH_1(log,::log) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: error: '::log' has not been declared 34 | VECTORIZED_MATH_1(log,::log) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: note: suggested alternatives: 34 | VECTORIZED_MATH_1(log,::log) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:19: note: 'Rcpp::log' 34 | VECTORIZED_MATH_1(log,::log) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:1: note: in expansion of macro 'VECTORIZED_MATH_1' 34 | VECTORIZED_MATH_1(log,::log) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: error: '::log' has not been declared 34 | VECTORIZED_MATH_1(log,::log) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: note: suggested alternatives: 34 | VECTORIZED_MATH_1(log,::log) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:19: note: 'Rcpp::log' 34 | VECTORIZED_MATH_1(log,::log) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1' 91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: error: '::log' has not been declared 34 | VECTORIZED_MATH_1(log,::log) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: note: suggested alternatives: 34 | VECTORIZED_MATH_1(log,::log) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:19: note: 'Rcpp::log' 34 | VECTORIZED_MATH_1(log,::log) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1' 91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:1: note: in expansion of macro 'VECTORIZED_MATH_1' 34 | VECTORIZED_MATH_1(log,::log) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::log(const VectorBase<13, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: error: '::log' has not been declared 34 | VECTORIZED_MATH_1(log,::log) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: note: suggested alternatives: 34 | VECTORIZED_MATH_1(log,::log) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:19: note: 'Rcpp::log' 34 | VECTORIZED_MATH_1(log,::log) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: error: '::log' has not been declared 34 | VECTORIZED_MATH_1(log,::log) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:25: note: suggested alternatives: 34 | VECTORIZED_MATH_1(log,::log) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:19: note: 'Rcpp::log' 34 | VECTORIZED_MATH_1(log,::log) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:1: note: in expansion of macro 'VECTORIZED_MATH_1' 34 | VECTORIZED_MATH_1(log,::log) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: error: '::log10' has not been declared; did you mean 'std::log10'? 35 | VECTORIZED_MATH_1(log10,::log10) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1095:5: note: 'std::log10' declared here 1095 | log10(const complex<_Tp>& __z) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: error: '::log10' has not been declared; did you mean 'std::log10'? 35 | VECTORIZED_MATH_1(log10,::log10) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1095:5: note: 'std::log10' declared here 1095 | log10(const complex<_Tp>& __z) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:1: note: in expansion of macro 'VECTORIZED_MATH_1' 35 | VECTORIZED_MATH_1(log10,::log10) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::log10(const VectorBase<14, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: error: '::log10' has not been declared 35 | VECTORIZED_MATH_1(log10,::log10) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: note: suggested alternatives: 35 | VECTORIZED_MATH_1(log10,::log10) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1095:5: note: 'std::log10' 1095 | log10(const complex<_Tp>& __z) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:19: note: 'Rcpp::log10' 35 | VECTORIZED_MATH_1(log10,::log10) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: error: '::log10' has not been declared 35 | VECTORIZED_MATH_1(log10,::log10) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: note: suggested alternatives: 35 | VECTORIZED_MATH_1(log10,::log10) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1095:5: note: 'std::log10' 1095 | log10(const complex<_Tp>& __z) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:19: note: 'Rcpp::log10' 35 | VECTORIZED_MATH_1(log10,::log10) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:1: note: in expansion of macro 'VECTORIZED_MATH_1' 35 | VECTORIZED_MATH_1(log10,::log10) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: error: '::log10' has not been declared 35 | VECTORIZED_MATH_1(log10,::log10) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: note: suggested alternatives: 35 | VECTORIZED_MATH_1(log10,::log10) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1095:5: note: 'std::log10' 1095 | log10(const complex<_Tp>& __z) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:19: note: 'Rcpp::log10' 35 | VECTORIZED_MATH_1(log10,::log10) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: error: '::log10' has not been declared 35 | VECTORIZED_MATH_1(log10,::log10) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: note: suggested alternatives: 35 | VECTORIZED_MATH_1(log10,::log10) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1095:5: note: 'std::log10' 1095 | log10(const complex<_Tp>& __z) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:19: note: 'Rcpp::log10' 35 | VECTORIZED_MATH_1(log10,::log10) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:1: note: in expansion of macro 'VECTORIZED_MATH_1' 35 | VECTORIZED_MATH_1(log10,::log10) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: error: '::log10' has not been declared 35 | VECTORIZED_MATH_1(log10,::log10) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: note: suggested alternatives: 35 | VECTORIZED_MATH_1(log10,::log10) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1095:5: note: 'std::log10' 1095 | log10(const complex<_Tp>& __z) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:19: note: 'Rcpp::log10' 35 | VECTORIZED_MATH_1(log10,::log10) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1' 91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: error: '::log10' has not been declared 35 | VECTORIZED_MATH_1(log10,::log10) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: note: suggested alternatives: 35 | VECTORIZED_MATH_1(log10,::log10) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1095:5: note: 'std::log10' 1095 | log10(const complex<_Tp>& __z) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:19: note: 'Rcpp::log10' 35 | VECTORIZED_MATH_1(log10,::log10) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1' 91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:1: note: in expansion of macro 'VECTORIZED_MATH_1' 35 | VECTORIZED_MATH_1(log10,::log10) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::log10(const VectorBase<13, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: error: '::log10' has not been declared 35 | VECTORIZED_MATH_1(log10,::log10) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: note: suggested alternatives: 35 | VECTORIZED_MATH_1(log10,::log10) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1095:5: note: 'std::log10' 1095 | log10(const complex<_Tp>& __z) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:19: note: 'Rcpp::log10' 35 | VECTORIZED_MATH_1(log10,::log10) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: error: '::log10' has not been declared 35 | VECTORIZED_MATH_1(log10,::log10) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:27: note: suggested alternatives: 35 | VECTORIZED_MATH_1(log10,::log10) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1095:5: note: 'std::log10' 1095 | log10(const complex<_Tp>& __z) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:19: note: 'Rcpp::log10' 35 | VECTORIZED_MATH_1(log10,::log10) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:35:1: note: in expansion of macro 'VECTORIZED_MATH_1' 35 | VECTORIZED_MATH_1(log10,::log10) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: error: '::sqrt' has not been declared; did you mean 'std::sqrt'? 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1199:5: note: 'std::sqrt' declared here 1199 | sqrt(const complex<_Tp>& __z) { return __complex_sqrt(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: error: '::sqrt' has not been declared; did you mean 'std::sqrt'? 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1199:5: note: 'std::sqrt' declared here 1199 | sqrt(const complex<_Tp>& __z) { return __complex_sqrt(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:1: note: in expansion of macro 'VECTORIZED_MATH_1' 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::sqrt(const VectorBase<14, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: error: '::sqrt' has not been declared 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: note: suggested alternatives: 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1199:5: note: 'std::sqrt' 1199 | sqrt(const complex<_Tp>& __z) { return __complex_sqrt(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:19: note: 'Rcpp::sqrt' 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: error: '::sqrt' has not been declared 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: note: suggested alternatives: 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1199:5: note: 'std::sqrt' 1199 | sqrt(const complex<_Tp>& __z) { return __complex_sqrt(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:19: note: 'Rcpp::sqrt' 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:1: note: in expansion of macro 'VECTORIZED_MATH_1' 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: error: '::sqrt' has not been declared 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: note: suggested alternatives: 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1199:5: note: 'std::sqrt' 1199 | sqrt(const complex<_Tp>& __z) { return __complex_sqrt(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:19: note: 'Rcpp::sqrt' 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: error: '::sqrt' has not been declared 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: note: suggested alternatives: 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1199:5: note: 'std::sqrt' 1199 | sqrt(const complex<_Tp>& __z) { return __complex_sqrt(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:19: note: 'Rcpp::sqrt' 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:1: note: in expansion of macro 'VECTORIZED_MATH_1' 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: error: '::sqrt' has not been declared 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: note: suggested alternatives: 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1199:5: note: 'std::sqrt' 1199 | sqrt(const complex<_Tp>& __z) { return __complex_sqrt(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:19: note: 'Rcpp::sqrt' 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1' 91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: error: '::sqrt' has not been declared 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: note: suggested alternatives: 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1199:5: note: 'std::sqrt' 1199 | sqrt(const complex<_Tp>& __z) { return __complex_sqrt(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:19: note: 'Rcpp::sqrt' 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1' 91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:1: note: in expansion of macro 'VECTORIZED_MATH_1' 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::sqrt(const VectorBase<13, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: error: '::sqrt' has not been declared 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: note: suggested alternatives: 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1199:5: note: 'std::sqrt' 1199 | sqrt(const complex<_Tp>& __z) { return __complex_sqrt(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:19: note: 'Rcpp::sqrt' 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: error: '::sqrt' has not been declared 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:26: note: suggested alternatives: 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1199:5: note: 'std::sqrt' 1199 | sqrt(const complex<_Tp>& __z) { return __complex_sqrt(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:19: note: 'Rcpp::sqrt' 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:1: note: in expansion of macro 'VECTORIZED_MATH_1' 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: error: '::sin' has not been declared; did you mean 'std::sin'? 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1125:5: note: 'std::sin' declared here 1125 | sin(const complex<_Tp>& __z) { return __complex_sin(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: error: '::sin' has not been declared; did you mean 'std::sin'? 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1125:5: note: 'std::sin' declared here 1125 | sin(const complex<_Tp>& __z) { return __complex_sin(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:1: note: in expansion of macro 'VECTORIZED_MATH_1' 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::sin(const VectorBase<14, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: error: '::sin' has not been declared 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: note: suggested alternatives: 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1125:5: note: 'std::sin' 1125 | sin(const complex<_Tp>& __z) { return __complex_sin(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:19: note: 'Rcpp::sin' 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: error: '::sin' has not been declared 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: note: suggested alternatives: 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1125:5: note: 'std::sin' 1125 | sin(const complex<_Tp>& __z) { return __complex_sin(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:19: note: 'Rcpp::sin' 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:1: note: in expansion of macro 'VECTORIZED_MATH_1' 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: error: '::sin' has not been declared 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: note: suggested alternatives: 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1125:5: note: 'std::sin' 1125 | sin(const complex<_Tp>& __z) { return __complex_sin(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:19: note: 'Rcpp::sin' 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: error: '::sin' has not been declared 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: note: suggested alternatives: 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1125:5: note: 'std::sin' 1125 | sin(const complex<_Tp>& __z) { return __complex_sin(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:19: note: 'Rcpp::sin' 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:1: note: in expansion of macro 'VECTORIZED_MATH_1' 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: error: '::sin' has not been declared 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: note: suggested alternatives: 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1125:5: note: 'std::sin' 1125 | sin(const complex<_Tp>& __z) { return __complex_sin(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:19: note: 'Rcpp::sin' 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1' 91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: error: '::sin' has not been declared 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: note: suggested alternatives: 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1125:5: note: 'std::sin' 1125 | sin(const complex<_Tp>& __z) { return __complex_sin(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:19: note: 'Rcpp::sin' 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1' 91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:1: note: in expansion of macro 'VECTORIZED_MATH_1' 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::sin(const VectorBase<13, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: error: '::sin' has not been declared 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: note: suggested alternatives: 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1125:5: note: 'std::sin' 1125 | sin(const complex<_Tp>& __z) { return __complex_sin(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:19: note: 'Rcpp::sin' 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: error: '::sin' has not been declared 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:25: note: suggested alternatives: 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1125:5: note: 'std::sin' 1125 | sin(const complex<_Tp>& __z) { return __complex_sin(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:19: note: 'Rcpp::sin' 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:1: note: in expansion of macro 'VECTORIZED_MATH_1' 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: error: '::sinh' has not been declared; did you mean 'std::sinh'? 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1155:5: note: 'std::sinh' declared here 1155 | sinh(const complex<_Tp>& __z) { return __complex_sinh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: error: '::sinh' has not been declared; did you mean 'std::sinh'? 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1155:5: note: 'std::sinh' declared here 1155 | sinh(const complex<_Tp>& __z) { return __complex_sinh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:1: note: in expansion of macro 'VECTORIZED_MATH_1' 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::sinh(const VectorBase<14, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: error: '::sinh' has not been declared 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: note: suggested alternatives: 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1155:5: note: 'std::sinh' 1155 | sinh(const complex<_Tp>& __z) { return __complex_sinh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:19: note: 'Rcpp::sinh' 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: error: '::sinh' has not been declared 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: note: suggested alternatives: 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1155:5: note: 'std::sinh' 1155 | sinh(const complex<_Tp>& __z) { return __complex_sinh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:19: note: 'Rcpp::sinh' 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:1: note: in expansion of macro 'VECTORIZED_MATH_1' 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: error: '::sinh' has not been declared 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: note: suggested alternatives: 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1155:5: note: 'std::sinh' 1155 | sinh(const complex<_Tp>& __z) { return __complex_sinh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:19: note: 'Rcpp::sinh' 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: error: '::sinh' has not been declared 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: note: suggested alternatives: 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1155:5: note: 'std::sinh' 1155 | sinh(const complex<_Tp>& __z) { return __complex_sinh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:19: note: 'Rcpp::sinh' 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:1: note: in expansion of macro 'VECTORIZED_MATH_1' 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: error: '::sinh' has not been declared 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: note: suggested alternatives: 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1155:5: note: 'std::sinh' 1155 | sinh(const complex<_Tp>& __z) { return __complex_sinh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:19: note: 'Rcpp::sinh' 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1' 91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: error: '::sinh' has not been declared 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: note: suggested alternatives: 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1155:5: note: 'std::sinh' 1155 | sinh(const complex<_Tp>& __z) { return __complex_sinh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:19: note: 'Rcpp::sinh' 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1' 91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:1: note: in expansion of macro 'VECTORIZED_MATH_1' 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::sinh(const VectorBase<13, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: error: '::sinh' has not been declared 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: note: suggested alternatives: 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1155:5: note: 'std::sinh' 1155 | sinh(const complex<_Tp>& __z) { return __complex_sinh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:19: note: 'Rcpp::sinh' 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: error: '::sinh' has not been declared 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:26: note: suggested alternatives: 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1155:5: note: 'std::sinh' 1155 | sinh(const complex<_Tp>& __z) { return __complex_sinh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:19: note: 'Rcpp::sinh' 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:1: note: in expansion of macro 'VECTORIZED_MATH_1' 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: error: '::tan' has not been declared; did you mean 'std::tan'? 39 | VECTORIZED_MATH_1(tan,::tan) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1226:5: note: 'std::tan' declared here 1226 | tan(const complex<_Tp>& __z) { return __complex_tan(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: error: '::tan' has not been declared; did you mean 'std::tan'? 39 | VECTORIZED_MATH_1(tan,::tan) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1226:5: note: 'std::tan' declared here 1226 | tan(const complex<_Tp>& __z) { return __complex_tan(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:1: note: in expansion of macro 'VECTORIZED_MATH_1' 39 | VECTORIZED_MATH_1(tan,::tan) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::tan(const VectorBase<14, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: error: '::tan' has not been declared 39 | VECTORIZED_MATH_1(tan,::tan) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: note: suggested alternatives: 39 | VECTORIZED_MATH_1(tan,::tan) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1226:5: note: 'std::tan' 1226 | tan(const complex<_Tp>& __z) { return __complex_tan(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:19: note: 'Rcpp::tan' 39 | VECTORIZED_MATH_1(tan,::tan) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: error: '::tan' has not been declared 39 | VECTORIZED_MATH_1(tan,::tan) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: note: suggested alternatives: 39 | VECTORIZED_MATH_1(tan,::tan) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1226:5: note: 'std::tan' 1226 | tan(const complex<_Tp>& __z) { return __complex_tan(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:19: note: 'Rcpp::tan' 39 | VECTORIZED_MATH_1(tan,::tan) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:1: note: in expansion of macro 'VECTORIZED_MATH_1' 39 | VECTORIZED_MATH_1(tan,::tan) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: error: '::tan' has not been declared 39 | VECTORIZED_MATH_1(tan,::tan) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: note: suggested alternatives: 39 | VECTORIZED_MATH_1(tan,::tan) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1226:5: note: 'std::tan' 1226 | tan(const complex<_Tp>& __z) { return __complex_tan(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:19: note: 'Rcpp::tan' 39 | VECTORIZED_MATH_1(tan,::tan) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: error: '::tan' has not been declared 39 | VECTORIZED_MATH_1(tan,::tan) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: note: suggested alternatives: 39 | VECTORIZED_MATH_1(tan,::tan) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1226:5: note: 'std::tan' 1226 | tan(const complex<_Tp>& __z) { return __complex_tan(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:19: note: 'Rcpp::tan' 39 | VECTORIZED_MATH_1(tan,::tan) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:1: note: in expansion of macro 'VECTORIZED_MATH_1' 39 | VECTORIZED_MATH_1(tan,::tan) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: error: '::tan' has not been declared 39 | VECTORIZED_MATH_1(tan,::tan) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: note: suggested alternatives: 39 | VECTORIZED_MATH_1(tan,::tan) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1226:5: note: 'std::tan' 1226 | tan(const complex<_Tp>& __z) { return __complex_tan(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:19: note: 'Rcpp::tan' 39 | VECTORIZED_MATH_1(tan,::tan) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1' 91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: error: '::tan' has not been declared 39 | VECTORIZED_MATH_1(tan,::tan) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: note: suggested alternatives: 39 | VECTORIZED_MATH_1(tan,::tan) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1226:5: note: 'std::tan' 1226 | tan(const complex<_Tp>& __z) { return __complex_tan(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:19: note: 'Rcpp::tan' 39 | VECTORIZED_MATH_1(tan,::tan) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1' 91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:1: note: in expansion of macro 'VECTORIZED_MATH_1' 39 | VECTORIZED_MATH_1(tan,::tan) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::tan(const VectorBase<13, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: error: '::tan' has not been declared 39 | VECTORIZED_MATH_1(tan,::tan) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: note: suggested alternatives: 39 | VECTORIZED_MATH_1(tan,::tan) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1226:5: note: 'std::tan' 1226 | tan(const complex<_Tp>& __z) { return __complex_tan(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:19: note: 'Rcpp::tan' 39 | VECTORIZED_MATH_1(tan,::tan) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: error: '::tan' has not been declared 39 | VECTORIZED_MATH_1(tan,::tan) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:25: note: suggested alternatives: 39 | VECTORIZED_MATH_1(tan,::tan) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1226:5: note: 'std::tan' 1226 | tan(const complex<_Tp>& __z) { return __complex_tan(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:19: note: 'Rcpp::tan' 39 | VECTORIZED_MATH_1(tan,::tan) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:39:1: note: in expansion of macro 'VECTORIZED_MATH_1' 39 | VECTORIZED_MATH_1(tan,::tan) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: error: '::tanh' has not been declared; did you mean 'std::tanh'? 40 | VECTORIZED_MATH_1(tanh,::tanh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1254:5: note: 'std::tanh' declared here 1254 | tanh(const complex<_Tp>& __z) { return __complex_tanh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: error: '::tanh' has not been declared; did you mean 'std::tanh'? 40 | VECTORIZED_MATH_1(tanh,::tanh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1254:5: note: 'std::tanh' declared here 1254 | tanh(const complex<_Tp>& __z) { return __complex_tanh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:1: note: in expansion of macro 'VECTORIZED_MATH_1' 40 | VECTORIZED_MATH_1(tanh,::tanh) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::tanh(const VectorBase<14, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: error: '::tanh' has not been declared 40 | VECTORIZED_MATH_1(tanh,::tanh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: note: suggested alternatives: 40 | VECTORIZED_MATH_1(tanh,::tanh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1254:5: note: 'std::tanh' 1254 | tanh(const complex<_Tp>& __z) { return __complex_tanh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:19: note: 'Rcpp::tanh' 40 | VECTORIZED_MATH_1(tanh,::tanh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: error: '::tanh' has not been declared 40 | VECTORIZED_MATH_1(tanh,::tanh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: note: suggested alternatives: 40 | VECTORIZED_MATH_1(tanh,::tanh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1254:5: note: 'std::tanh' 1254 | tanh(const complex<_Tp>& __z) { return __complex_tanh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:19: note: 'Rcpp::tanh' 40 | VECTORIZED_MATH_1(tanh,::tanh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:1: note: in expansion of macro 'VECTORIZED_MATH_1' 40 | VECTORIZED_MATH_1(tanh,::tanh) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: error: '::tanh' has not been declared 40 | VECTORIZED_MATH_1(tanh,::tanh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: note: suggested alternatives: 40 | VECTORIZED_MATH_1(tanh,::tanh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1254:5: note: 'std::tanh' 1254 | tanh(const complex<_Tp>& __z) { return __complex_tanh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:19: note: 'Rcpp::tanh' 40 | VECTORIZED_MATH_1(tanh,::tanh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: error: '::tanh' has not been declared 40 | VECTORIZED_MATH_1(tanh,::tanh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: note: suggested alternatives: 40 | VECTORIZED_MATH_1(tanh,::tanh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1254:5: note: 'std::tanh' 1254 | tanh(const complex<_Tp>& __z) { return __complex_tanh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:19: note: 'Rcpp::tanh' 40 | VECTORIZED_MATH_1(tanh,::tanh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:1: note: in expansion of macro 'VECTORIZED_MATH_1' 40 | VECTORIZED_MATH_1(tanh,::tanh) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: error: '::tanh' has not been declared 40 | VECTORIZED_MATH_1(tanh,::tanh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: note: suggested alternatives: 40 | VECTORIZED_MATH_1(tanh,::tanh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1254:5: note: 'std::tanh' 1254 | tanh(const complex<_Tp>& __z) { return __complex_tanh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:19: note: 'Rcpp::tanh' 40 | VECTORIZED_MATH_1(tanh,::tanh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1' 91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: error: '::tanh' has not been declared 40 | VECTORIZED_MATH_1(tanh,::tanh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: note: suggested alternatives: 40 | VECTORIZED_MATH_1(tanh,::tanh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1254:5: note: 'std::tanh' 1254 | tanh(const complex<_Tp>& __z) { return __complex_tanh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:19: note: 'Rcpp::tanh' 40 | VECTORIZED_MATH_1(tanh,::tanh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1' 91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:1: note: in expansion of macro 'VECTORIZED_MATH_1' 40 | VECTORIZED_MATH_1(tanh,::tanh) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::tanh(const VectorBase<13, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: error: '::tanh' has not been declared 40 | VECTORIZED_MATH_1(tanh,::tanh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: note: suggested alternatives: 40 | VECTORIZED_MATH_1(tanh,::tanh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1254:5: note: 'std::tanh' 1254 | tanh(const complex<_Tp>& __z) { return __complex_tanh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:19: note: 'Rcpp::tanh' 40 | VECTORIZED_MATH_1(tanh,::tanh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: error: '::tanh' has not been declared 40 | VECTORIZED_MATH_1(tanh,::tanh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:26: note: suggested alternatives: 40 | VECTORIZED_MATH_1(tanh,::tanh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1254:5: note: 'std::tanh' 1254 | tanh(const complex<_Tp>& __z) { return __complex_tanh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:19: note: 'Rcpp::tanh' 40 | VECTORIZED_MATH_1(tanh,::tanh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:40:1: note: in expansion of macro 'VECTORIZED_MATH_1' 40 | VECTORIZED_MATH_1(tanh,::tanh) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:42:25: error: '::fabs' has not been declared; did you mean 'std::fabs'? 42 | VECTORIZED_MATH_1(abs,::fabs) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2429:5: note: 'std::fabs' declared here 2429 | fabs(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:42:25: error: '::fabs' has not been declared; did you mean 'std::fabs'? 42 | VECTORIZED_MATH_1(abs,::fabs) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2429:5: note: 'std::fabs' declared here 2429 | fabs(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:42:1: note: in expansion of macro 'VECTORIZED_MATH_1' 42 | VECTORIZED_MATH_1(abs,::fabs) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::abs(const VectorBase<14, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:42:25: error: '::fabs' has not been declared; did you mean 'std::fabs'? 42 | VECTORIZED_MATH_1(abs,::fabs) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2429:5: note: 'std::fabs' declared here 2429 | fabs(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:42:25: error: '::fabs' has not been declared; did you mean 'std::fabs'? 42 | VECTORIZED_MATH_1(abs,::fabs) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2429:5: note: 'std::fabs' declared here 2429 | fabs(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:42:1: note: in expansion of macro 'VECTORIZED_MATH_1' 42 | VECTORIZED_MATH_1(abs,::fabs) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:42:25: error: '::fabs' has not been declared; did you mean 'std::fabs'? 42 | VECTORIZED_MATH_1(abs,::fabs) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2429:5: note: 'std::fabs' declared here 2429 | fabs(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:42:25: error: '::fabs' has not been declared; did you mean 'std::fabs'? 42 | VECTORIZED_MATH_1(abs,::fabs) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2429:5: note: 'std::fabs' declared here 2429 | fabs(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:42:1: note: in expansion of macro 'VECTORIZED_MATH_1' 42 | VECTORIZED_MATH_1(abs,::fabs) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:42:25: error: '::fabs' has not been declared; did you mean 'std::fabs'? 42 | VECTORIZED_MATH_1(abs,::fabs) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2429:5: note: 'std::fabs' declared here 2429 | fabs(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:42:25: error: '::fabs' has not been declared; did you mean 'std::fabs'? 42 | VECTORIZED_MATH_1(abs,::fabs) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2429:5: note: 'std::fabs' declared here 2429 | fabs(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:42:1: note: in expansion of macro 'VECTORIZED_MATH_1' 42 | VECTORIZED_MATH_1(abs,::fabs) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::abs(const VectorBase<13, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:42:25: error: '::fabs' has not been declared; did you mean 'std::fabs'? 42 | VECTORIZED_MATH_1(abs,::fabs) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2429:5: note: 'std::fabs' declared here 2429 | fabs(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:42:25: error: '::fabs' has not been declared; did you mean 'std::fabs'? 42 | VECTORIZED_MATH_1(abs,::fabs) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2429:5: note: 'std::fabs' declared here 2429 | fabs(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:42:1: note: in expansion of macro 'VECTORIZED_MATH_1' 42 | VECTORIZED_MATH_1(abs,::fabs) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: error: '::expm1' has not been declared; did you mean 'std::expm1'? 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1' declared here 2383 | expm1(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: error: '::expm1' has not been declared; did you mean 'std::expm1'? 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1' declared here 2383 | expm1(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:1: note: in expansion of macro 'VECTORIZED_MATH_1' 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::expm1(const VectorBase<14, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: error: '::expm1' has not been declared 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: note: suggested alternatives: 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1' 2383 | expm1(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:19: note: 'Rcpp::expm1' 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: error: '::expm1' has not been declared 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: note: suggested alternatives: 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1' 2383 | expm1(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:19: note: 'Rcpp::expm1' 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:1: note: in expansion of macro 'VECTORIZED_MATH_1' 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: error: '::expm1' has not been declared 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: note: suggested alternatives: 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1' 2383 | expm1(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:19: note: 'Rcpp::expm1' 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: error: '::expm1' has not been declared 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: note: suggested alternatives: 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1' 2383 | expm1(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:19: note: 'Rcpp::expm1' 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:1: note: in expansion of macro 'VECTORIZED_MATH_1' 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: error: '::expm1' has not been declared 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: note: suggested alternatives: 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1' 2383 | expm1(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:19: note: 'Rcpp::expm1' 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1' 91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: error: '::expm1' has not been declared 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: note: suggested alternatives: 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1' 2383 | expm1(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:19: note: 'Rcpp::expm1' 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1' 91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:1: note: in expansion of macro 'VECTORIZED_MATH_1' 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::expm1(const VectorBase<13, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: error: '::expm1' has not been declared 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: note: suggested alternatives: 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1' 2383 | expm1(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:19: note: 'Rcpp::expm1' 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: error: '::expm1' has not been declared 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:34: note: suggested alternatives: 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1' 2383 | expm1(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:19: note: 'Rcpp::expm1' 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:1: note: in expansion of macro 'VECTORIZED_MATH_1' 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: error: '::log1p' has not been declared; did you mean 'std::log1p'? 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p' declared here 2524 | log1p(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: error: '::log1p' has not been declared; did you mean 'std::log1p'? 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:34: note: in definition of macro 'VECTORIZED_MATH_1' 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p' declared here 2524 | log1p(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:86:49: error: template argument 1 is invalid 86 | inline sugar::Vectorized<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:1: note: in expansion of macro 'VECTORIZED_MATH_1' 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::log1p(const VectorBase<14, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: error: '::log1p' has not been declared 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: note: suggested alternatives: 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p' 2524 | log1p(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p' 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: error: '::log1p' has not been declared 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: note: suggested alternatives: 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:42: note: in definition of macro 'VECTORIZED_MATH_1' 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p' 2524 | log1p(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p' 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:88:57: error: template argument 1 is invalid 88 | return sugar::Vectorized<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:1: note: in expansion of macro 'VECTORIZED_MATH_1' 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: error: '::log1p' has not been declared 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: note: suggested alternatives: 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p' 2524 | log1p(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p' 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: error: '::log1p' has not been declared 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: note: suggested alternatives: 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:34: note: in definition of macro 'VECTORIZED_MATH_1' 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p' 2524 | log1p(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p' 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:87:9: note: in definition of macro 'VECTORIZED_MATH_1' 87 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:90:63: error: template argument 1 is invalid 90 | inline sugar::Vectorized<__SYMBOL__,true,NumericVector> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:1: note: in expansion of macro 'VECTORIZED_MATH_1' 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: error: '::log1p' has not been declared 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: note: suggested alternatives: 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p' 2524 | log1p(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p' 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1' 91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: error: '::log1p' has not been declared 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: note: suggested alternatives: 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:41: note: in definition of macro 'VECTORIZED_MATH_1' 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p' 2524 | log1p(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p' 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:91:9: note: in definition of macro 'VECTORIZED_MATH_1' 91 | __NAME__( SEXP x){ return __NAME__( NumericVector( x ) ) ; } \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:93:56: error: template argument 1 is invalid 93 | inline sugar::Vectorized_INTSXP<__SYMBOL__,NA,T> \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:1: note: in expansion of macro 'VECTORIZED_MATH_1' 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~~~~~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h: In function 'int Rcpp::log1p(const VectorBase<13, NA_, T>&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: error: '::log1p' has not been declared 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: note: suggested alternatives: 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p' 2524 | log1p(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p' 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: error: '::log1p' has not been declared 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:34: note: suggested alternatives: 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:49: note: in definition of macro 'VECTORIZED_MATH_1' 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^~~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p' 2524 | log1p(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p' 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:95:64: error: template argument 1 is invalid 95 | return sugar::Vectorized_INTSXP<__SYMBOL__,NA,T>( t ) ; \ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:1: note: in expansion of macro 'VECTORIZED_MATH_1' 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~~~~~~~~~~~~~ In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/functions.h:32, from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/sugar.h:31: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h: In function 'double Rcpp::internal::complex__Mod(Rcomplex)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:58:51: error: '::sqrt' has not been declared 58 | inline double complex__Mod( Rcomplex x){ return ::sqrt( x.i * x.i + x.r * x.r) ; } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:58:51: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1199:5: note: 'std::sqrt' 1199 | sqrt(const complex<_Tp>& __z) { return __complex_sqrt(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:19: note: 'Rcpp::sqrt' 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h: In function 'double Rcpp::internal::complex__Arg(Rcomplex)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:65:52: error: '::atan2' has not been declared; did you mean 'std::atan2'? 65 | inline double complex__Arg( Rcomplex x ){ return ::atan2(x.i, x.r); } | ^~~~~ | std::atan2 /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1056:5: note: 'std::atan2' declared here 1056 | atan2(_Tp __y, _Up __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h: In function 'Rcomplex Rcpp::internal::complex__exp(Rcomplex)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:69:21: error: '::exp' has not been declared 69 | double expx = ::exp(x.r); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:69:21: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:25:19: note: 'Rcpp::exp' 25 | VECTORIZED_MATH_1(exp,::exp) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:70:20: error: '::cos' has not been declared 70 | y.r = expx * ::cos(x.i); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:70:20: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1007:5: note: 'std::cos' 1007 | cos(const complex<_Tp>& __z) { return __complex_cos(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:19: note: 'Rcpp::cos' 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:71:20: error: '::sin' has not been declared 71 | y.i = expx * ::sin(x.i); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:71:20: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1125:5: note: 'std::sin' 1125 | sin(const complex<_Tp>& __z) { return __complex_sin(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:19: note: 'Rcpp::sin' 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h: In function 'Rcomplex Rcpp::internal::complex__log(Rcomplex)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:76:13: error: '::atan2' has not been declared; did you mean 'std::atan2'? 76 | y.i = ::atan2(x.i, x.r); | ^~~~~ | std::atan2 /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:1056:5: note: 'std::atan2' declared here 1056 | atan2(_Tp __y, _Up __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:77:13: error: '::log' has not been declared 77 | y.r = ::log(::hypot(x.r, x.i)); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:77:13: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:19: note: 'Rcpp::log' 34 | VECTORIZED_MATH_1(log,::log) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:77:19: error: '::hypot' has not been declared; did you mean 'std::hypot'? 77 | y.r = ::log(::hypot(x.r, x.i)); | ^~~~~ | std::hypot /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:3708:5: note: 'std::hypot' declared here 3708 | hypot(_Tp __x, _Up __y) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h: In function 'Rcomplex Rcpp::internal::complex__sqrt(Rcomplex)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:84:18: error: '::hypot' has not been declared; did you mean 'std::hypot'? 84 | if( (mag = ::hypot(z.r, z.i)) == 0.0) | ^~~~~ | std::hypot /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:3708:5: note: 'std::hypot' declared here 3708 | hypot(_Tp __x, _Up __y) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:87:17: error: '::sqrt' has not been declared 87 | r.r = ::sqrt(0.5 * (mag + z.r) ); | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:87:17: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1199:5: note: 'std::sqrt' 1199 | sqrt(const complex<_Tp>& __z) { return __complex_sqrt(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:19: note: 'Rcpp::sqrt' 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:91:17: error: '::sqrt' has not been declared 91 | r.i = ::sqrt(0.5 * (mag - z.r) ); | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:91:17: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1199:5: note: 'std::sqrt' 1199 | sqrt(const complex<_Tp>& __z) { return __complex_sqrt(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:19: note: 'Rcpp::sqrt' 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h: In function 'Rcomplex Rcpp::internal::complex__cos(Rcomplex)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:100:13: error: '::cos' has not been declared 100 | r.r = ::cos(z.r) * ::cosh(z.i); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:100:13: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1007:5: note: 'std::cos' 1007 | cos(const complex<_Tp>& __z) { return __complex_cos(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:19: note: 'Rcpp::cos' 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:100:26: error: '::cosh' has not been declared 100 | r.r = ::cos(z.r) * ::cosh(z.i); | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:100:26: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1037:5: note: 'std::cosh' 1037 | cosh(const complex<_Tp>& __z) { return __complex_cosh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:19: note: 'Rcpp::cosh' 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:101:15: error: '::sin' has not been declared 101 | r.i = - ::sin(z.r) * ::sinh(z.i); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:101:15: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1125:5: note: 'std::sin' 1125 | sin(const complex<_Tp>& __z) { return __complex_sin(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:19: note: 'Rcpp::sin' 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:101:28: error: '::sinh' has not been declared 101 | r.i = - ::sin(z.r) * ::sinh(z.i); | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:101:28: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1155:5: note: 'std::sinh' 1155 | sinh(const complex<_Tp>& __z) { return __complex_sinh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:19: note: 'Rcpp::sinh' 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h: In function 'Rcomplex Rcpp::internal::complex__cosh(Rcomplex)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:106:13: error: '::cos' has not been declared 106 | r.r = ::cos(-z.i) * ::cosh( z.r); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:106:13: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1007:5: note: 'std::cos' 1007 | cos(const complex<_Tp>& __z) { return __complex_cos(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:19: note: 'Rcpp::cos' 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:106:27: error: '::cosh' has not been declared 106 | r.r = ::cos(-z.i) * ::cosh( z.r); | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:106:27: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1037:5: note: 'std::cosh' 1037 | cosh(const complex<_Tp>& __z) { return __complex_cosh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:19: note: 'Rcpp::cosh' 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:107:15: error: '::sin' has not been declared 107 | r.i = - ::sin(-z.i) * ::sinh(z.r); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:107:15: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1125:5: note: 'std::sin' 1125 | sin(const complex<_Tp>& __z) { return __complex_sin(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:19: note: 'Rcpp::sin' 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:107:29: error: '::sinh' has not been declared 107 | r.i = - ::sin(-z.i) * ::sinh(z.r); | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:107:29: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1155:5: note: 'std::sinh' 1155 | sinh(const complex<_Tp>& __z) { return __complex_sinh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:19: note: 'Rcpp::sinh' 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h: In function 'Rcomplex Rcpp::internal::complex__sin(Rcomplex)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:112:13: error: '::sin' has not been declared 112 | r.r = ::sin(z.r) * ::cosh(z.i); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:112:13: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1125:5: note: 'std::sin' 1125 | sin(const complex<_Tp>& __z) { return __complex_sin(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:19: note: 'Rcpp::sin' 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:112:26: error: '::cosh' has not been declared 112 | r.r = ::sin(z.r) * ::cosh(z.i); | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:112:26: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1037:5: note: 'std::cosh' 1037 | cosh(const complex<_Tp>& __z) { return __complex_cosh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:19: note: 'Rcpp::cosh' 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:113:13: error: '::cos' has not been declared 113 | r.i = ::cos(z.r) * ::sinh(z.i); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:113:13: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1007:5: note: 'std::cos' 1007 | cos(const complex<_Tp>& __z) { return __complex_cos(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:19: note: 'Rcpp::cos' 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:113:26: error: '::sinh' has not been declared 113 | r.i = ::cos(z.r) * ::sinh(z.i); | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:113:26: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1155:5: note: 'std::sinh' 1155 | sinh(const complex<_Tp>& __z) { return __complex_sinh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:19: note: 'Rcpp::sinh' 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h: In function 'Rcomplex Rcpp::internal::complex__tan(Rcomplex)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:121:13: error: '::cos' has not been declared 121 | den = ::cos(x2) + ::cosh(y2); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:121:13: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1007:5: note: 'std::cos' 1007 | cos(const complex<_Tp>& __z) { return __complex_cos(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:31:19: note: 'Rcpp::cos' 31 | VECTORIZED_MATH_1(cos,::cos) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:121:25: error: '::cosh' has not been declared 121 | den = ::cos(x2) + ::cosh(y2); | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:121:25: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1037:5: note: 'std::cosh' 1037 | cosh(const complex<_Tp>& __z) { return __complex_cosh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:32:19: note: 'Rcpp::cosh' 32 | VECTORIZED_MATH_1(cosh,::cosh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:122:13: error: '::sin' has not been declared 122 | r.r = ::sin(x2)/den; | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:122:13: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1125:5: note: 'std::sin' 1125 | sin(const complex<_Tp>& __z) { return __complex_sin(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:37:19: note: 'Rcpp::sin' 37 | VECTORIZED_MATH_1(sin,::sin) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:125:24: error: '::fabs' has not been declared; did you mean 'std::fabs'? 125 | if (ISNAN(y2) || ::fabs(y2) < 50.0) | ^~~~ | std::fabs /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2429:5: note: 'std::fabs' declared here 2429 | fabs(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:126:17: error: '::sinh' has not been declared 126 | r.i = ::sinh(y2)/den; | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:126:17: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1155:5: note: 'std::sinh' 1155 | sinh(const complex<_Tp>& __z) { return __complex_sinh(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:38:19: note: 'Rcpp::sinh' 38 | VECTORIZED_MATH_1(sinh,::sinh) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h: In function 'Rcomplex Rcpp::internal::complex__asin(Rcomplex)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:138:18: error: '::hypot' has not been declared; did you mean 'std::hypot'? 138 | t1 = 0.5 * ::hypot(x + 1, y); | ^~~~~ | std::hypot /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:3708:5: note: 'std::hypot' declared here 3708 | hypot(_Tp __x, _Up __y) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:139:18: error: '::hypot' has not been declared; did you mean 'std::hypot'? 139 | t2 = 0.5 * ::hypot(x - 1, y); | ^~~~~ | std::hypot /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:3708:5: note: 'std::hypot' declared here 3708 | hypot(_Tp __x, _Up __y) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:142:13: error: '::asin' has not been declared 142 | r.r = ::asin(bet); | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:142:13: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2257:5: note: 'std::asin' 2257 | asin(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:27:19: note: 'Rcpp::asin' 27 | VECTORIZED_MATH_1(asin,::asin) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:143:13: error: '::log' has not been declared 143 | r.i = ::log(alpha + ::sqrt(alpha*alpha - 1)); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:143:13: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:19: note: 'Rcpp::log' 34 | VECTORIZED_MATH_1(log,::log) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:143:27: error: '::sqrt' has not been declared 143 | r.i = ::log(alpha + ::sqrt(alpha*alpha - 1)); | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:143:27: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1199:5: note: 'std::sqrt' 1199 | sqrt(const complex<_Tp>& __z) { return __complex_sqrt(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:36:19: note: 'Rcpp::sqrt' 36 | VECTORIZED_MATH_1(sqrt,::sqrt) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h: In function 'Rcomplex Rcpp::internal::complex__atan(Rcomplex)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:170:19: error: '::atan' has not been declared 170 | r.r = 0.5 * ::atan(2 * x / ( 1 - x * x - y * y)); | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:170:19: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2301:5: note: 'std::atan' 2301 | atan(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:28:19: note: 'Rcpp::atan' 28 | VECTORIZED_MATH_1(atan,::atan) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:171:20: error: '::log' has not been declared 171 | r.i = 0.25 * ::log((x * x + (y + 1) * (y + 1)) / | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:171:20: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:34:19: note: 'Rcpp::log' 34 | VECTORIZED_MATH_1(log,::log) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/functions.h:41: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/seq_along.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/seq_along.h:48:37: error: 'size_t' does not name a type 48 | inline sugar::SeqLen seq_len( const size_t& n){ | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/seq_along.h:1:1: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' +++ |+#include 1 | // -*- mode: C++; c-indent-level: 4; c-basic-offset: 4; tab-width: 8 -*- In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/functions.h:54: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/pow.h: In member function 'double Rcpp::sugar::Pow::operator[](R_xlen_t) const': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/pow.h:36:22: error: '::pow' has not been declared; did you mean 'std::pow'? 36 | return ::pow( object[i], op ); | ^~~ | std::pow /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2482:5: note: 'std::pow' declared here 2482 | pow(const std::complex<_Tp>& __x, const std::complex<_Up>& __y) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/pow.h: In member function 'double Rcpp::sugar::Pow<13, NA, T, EXPONENT_TYPE>::operator[](R_xlen_t) const': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/pow.h:52:53: error: '::pow' has not been declared; did you mean 'std::pow'? 52 | return x == NA_INTEGER ? NA_INTEGER : ::pow( x, op ); | ^~~ | std::pow /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2482:5: note: 'std::pow' declared here 2482 | pow(const std::complex<_Tp>& __x, const std::complex<_Up>& __y) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/pow.h: In member function 'double Rcpp::sugar::Pow<13, false, T, EXPONENT_TYPE>::operator[](R_xlen_t) const': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/pow.h:66:22: error: '::pow' has not been declared; did you mean 'std::pow'? 66 | return ::pow( object[i], op ); | ^~~ | std::pow /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2482:5: note: 'std::pow' declared here 2482 | pow(const std::complex<_Tp>& __x, const std::complex<_Up>& __y) | ^~~ In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/functions.h:65: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/sd.h: In member function 'Rcpp::sugar::Sd::STORAGE Rcpp::sugar::Sd::get() const': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/sd.h:37:22: error: '::sqrt' has not been declared 37 | return ::sqrt( var(object).get() ) ; | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/sd.h:37:22: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1199:5: note: 'std::sqrt' 1199 | sqrt(const complex<_Tp>& __z) { return __complex_sqrt(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:246:21: note: 'Rcpp::sqrt' 246 | RCPP_SUGAR_COMPLEX( sqrt, Rcomplex ) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/dpq.h:25, from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/stats.h:25, from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp.h:79: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/unif.h: In function 'double Rcpp::stats::punif_0(double, int, int)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:36:37: error: '::log' has not been declared 36 | #define R_D_val(x) (log_p ? ::log(x) : (x)) /* x in pF(x,..) */ | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/unif.h:60:28: note: in expansion of macro 'R_D_val' 60 | if (lower_tail) return R_D_val(x); | ^~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:36:37: note: suggested alternatives: 36 | #define R_D_val(x) (log_p ? ::log(x) : (x)) /* x in pF(x,..) */ | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/unif.h:60:28: note: in expansion of macro 'R_D_val' 60 | if (lower_tail) return R_D_val(x); | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log' 245 | RCPP_SUGAR_COMPLEX( log, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:36:37: error: '::log' has not been declared 36 | #define R_D_val(x) (log_p ? ::log(x) : (x)) /* x in pF(x,..) */ | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/unif.h:61:17: note: in expansion of macro 'R_D_val' 61 | else return R_D_val(1-x); | ^~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:36:37: note: suggested alternatives: 36 | #define R_D_val(x) (log_p ? ::log(x) : (x)) /* x in pF(x,..) */ | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/unif.h:61:17: note: in expansion of macro 'R_D_val' 61 | else return R_D_val(1-x); | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log' 245 | RCPP_SUGAR_COMPLEX( log, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/unif.h: In function 'double Rcpp::stats::qunif_1(double, double, int, int)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:52:50: error: '::exp' has not been declared 52 | #define R_DT_qIv(p) (log_p ? (lower_tail ? ::exp(p) : - ::expm1(p)) \ | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/unif.h:76:16: note: in expansion of macro 'R_DT_qIv' 76 | return a + R_DT_qIv(p) * (1.0 - a); | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:52:50: note: suggested alternatives: 52 | #define R_DT_qIv(p) (log_p ? (lower_tail ? ::exp(p) : - ::expm1(p)) \ | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/unif.h:76:16: note: in expansion of macro 'R_DT_qIv' 76 | return a + R_DT_qIv(p) * (1.0 - a); | ^~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp' 244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:52:63: error: '::expm1' has not been declared 52 | #define R_DT_qIv(p) (log_p ? (lower_tail ? ::exp(p) : - ::expm1(p)) \ | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/unif.h:76:16: note: in expansion of macro 'R_DT_qIv' 76 | return a + R_DT_qIv(p) * (1.0 - a); | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:52:63: note: suggested alternatives: 52 | #define R_DT_qIv(p) (log_p ? (lower_tail ? ::exp(p) : - ::expm1(p)) \ | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/unif.h:76:16: note: in expansion of macro 'R_DT_qIv' 76 | return a + R_DT_qIv(p) * (1.0 - a); | ^~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1' 2383 | expm1(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:19: note: 'Rcpp::expm1' 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/unif.h: In function 'double Rcpp::stats::qunif_0(double, int, int)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:52:50: error: '::exp' has not been declared 52 | #define R_DT_qIv(p) (log_p ? (lower_tail ? ::exp(p) : - ::expm1(p)) \ | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/unif.h:87:12: note: in expansion of macro 'R_DT_qIv' 87 | return R_DT_qIv(p) ; | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:52:50: note: suggested alternatives: 52 | #define R_DT_qIv(p) (log_p ? (lower_tail ? ::exp(p) : - ::expm1(p)) \ | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/unif.h:87:12: note: in expansion of macro 'R_DT_qIv' 87 | return R_DT_qIv(p) ; | ^~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp' 244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:52:63: error: '::expm1' has not been declared 52 | #define R_DT_qIv(p) (log_p ? (lower_tail ? ::exp(p) : - ::expm1(p)) \ | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/unif.h:87:12: note: in expansion of macro 'R_DT_qIv' 87 | return R_DT_qIv(p) ; | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:52:63: note: suggested alternatives: 52 | #define R_DT_qIv(p) (log_p ? (lower_tail ? ::exp(p) : - ::expm1(p)) \ | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/unif.h:87:12: note: in expansion of macro 'R_DT_qIv' 87 | return R_DT_qIv(p) ; | ^~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1' 2383 | expm1(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:19: note: 'Rcpp::expm1' 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/stats.h:32: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/norm.h: In function 'double Rcpp::stats::dnorm_1(double, double, int)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/norm.h:39:30: error: '::exp' has not been declared 39 | M_1_SQRT_2PI * ::exp(-0.5 * x * x)); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/norm.h:39:30: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp' 244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/norm.h: In function 'double Rcpp::stats::dnorm_0(double, int)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/norm.h:52:30: error: '::exp' has not been declared 52 | M_1_SQRT_2PI * ::exp(-0.5 * x * x)); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/norm.h:52:30: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp' 244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/stats.h:33: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/gamma.h: In function 'double Rcpp::stats::dgamma_1(double, double, int)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/gamma.h:50:32: error: '::log' has not been declared 50 | return log_p ? pr + ::log(shape/x) : pr*shape/x; | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/gamma.h:50:32: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log' 245 | RCPP_SUGAR_COMPLEX( log, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/stats.h:37: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h: In function 'double Rcpp::stats::dlnorm_0(double, int)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:40:11: error: '::log' has not been declared 40 | y = ::log(x); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:40:11: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log' 245 | RCPP_SUGAR_COMPLEX( log, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:42:47: error: '::log' has not been declared 42 | -(M_LN_SQRT_2PI + 0.5 * y * y + ::log(x)) : | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:42:47: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log' 245 | RCPP_SUGAR_COMPLEX( log, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:43:30: error: '::exp' has not been declared 43 | M_1_SQRT_2PI * ::exp(-0.5 * y * y) / x); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:43:30: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp' 244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h: In function 'double Rcpp::stats::dlnorm_1(double, double, int)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:57:12: error: '::log' has not been declared 57 | y = (::log(x) - meanlog); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:57:12: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log' 245 | RCPP_SUGAR_COMPLEX( log, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:59:47: error: '::log' has not been declared 59 | -(M_LN_SQRT_2PI + 0.5 * y * y + ::log(x)) : | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:59:47: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log' 245 | RCPP_SUGAR_COMPLEX( log, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:60:30: error: '::exp' has not been declared 60 | M_1_SQRT_2PI * ::exp(-0.5 * y * y) / x); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:60:30: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp' 244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h: In function 'double Rcpp::stats::plnorm_0(double, int, int)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:72:39: error: '::log' has not been declared 72 | return Rcpp::stats::pnorm_0(::log(x), lower_tail, log_p); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:72:39: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log' 245 | RCPP_SUGAR_COMPLEX( log, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h: In function 'double Rcpp::stats::plnorm_1(double, double, int, int)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:83:39: error: '::log' has not been declared 83 | return Rcpp::stats::pnorm_1(::log(x), meanlog, lower_tail, log_p); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:83:39: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log' 245 | RCPP_SUGAR_COMPLEX( log, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h: In function 'double Rcpp::stats::qlnorm_0(double, int, int)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:94:14: error: '::exp' has not been declared 94 | return ::exp(::Rf_qnorm5(p, 0.0, 1.0, lower_tail, log_p)); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:94:14: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp' 244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h: In function 'double Rcpp::stats::qlnorm_1(double, double, int, int)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:104:14: error: '::exp' has not been declared 104 | return ::exp(::Rf_qnorm5(p, meanlog, 1.0, lower_tail, log_p)); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/lnorm.h:104:14: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp' 244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/stats.h:38: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h: In function 'double Rcpp::stats::dweibull_1(double, double, int)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:42:14: error: '::pow' has not been declared 42 | tmp1 = ::pow(x, shape - 1); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:42:14: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2482:5: note: 'std::pow' 2482 | pow(const std::complex<_Tp>& __x, const std::complex<_Up>& __y) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/pow.h:79:45: note: 'Rcpp::pow' 79 | inline sugar::Pow pow( | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:46:19: error: '::log' has not been declared 46 | -tmp2 + ::log(shape * tmp1) : | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:46:19: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log' 245 | RCPP_SUGAR_COMPLEX( log, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:47:26: error: '::exp' has not been declared 47 | shape * tmp1 * ::exp(-tmp2); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:47:26: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp' 244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h: In function 'double Rcpp::stats::pweibull_1(double, double, int, int)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:58:12: error: '::pow' has not been declared 58 | x = -::pow(x , shape); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:58:12: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2482:5: note: 'std::pow' 2482 | pow(const std::complex<_Tp>& __x, const std::complex<_Up>& __y) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/pow.h:79:45: note: 'Rcpp::pow' 79 | inline sugar::Pow pow( | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:62:35: error: '::log' has not been declared 62 | ? (x > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x))) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:62:35: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log' 245 | RCPP_SUGAR_COMPLEX( log, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:62:42: error: '::expm1' has not been declared 62 | ? (x > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x))) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:62:42: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1' 2383 | expm1(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:19: note: 'Rcpp::expm1' 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:62:56: error: '::log1p' has not been declared 62 | ? (x > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x))) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:62:56: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p' 2524 | log1p(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p' 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:62:65: error: '::exp' has not been declared 62 | ? (x > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x))) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:62:65: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp' 244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:63:22: error: '::expm1' has not been declared 63 | : -::expm1(x)); | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:63:22: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1' 2383 | expm1(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:19: note: 'Rcpp::expm1' 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:38:46: error: '::exp' has not been declared 38 | #define R_D_exp(x) (log_p ? (x) : ::exp(x)) /* exp(x) */ | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:65:12: note: in expansion of macro 'R_D_exp' 65 | return R_D_exp(x); | ^~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:38:46: note: suggested alternatives: 38 | #define R_D_exp(x) (log_p ? (x) : ::exp(x)) /* exp(x) */ | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:65:12: note: in expansion of macro 'R_D_exp' 65 | return R_D_exp(x); | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp' 244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h: In function 'double Rcpp::stats::qweibull_1(double, double, int, int)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:76:14: error: '::pow' has not been declared 76 | return ::pow(- R_DT_Clog(p), 1./shape); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:76:14: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2482:5: note: 'std::pow' 2482 | pow(const std::complex<_Tp>& __x, const std::complex<_Up>& __y) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/pow.h:79:45: note: 'Rcpp::pow' 79 | inline sugar::Pow pow( | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:43:43: error: '::log' has not been declared 43 | #define R_Log1_Exp(x) ((x) > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x))) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:34: note: in expansion of macro 'R_Log1_Exp' 46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x)) | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp' 63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:76:20: note: in expansion of macro 'R_DT_Clog' 76 | return ::pow(- R_DT_Clog(p), 1./shape); | ^~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:43:43: note: suggested alternatives: 43 | #define R_Log1_Exp(x) ((x) > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x))) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:34: note: in expansion of macro 'R_Log1_Exp' 46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x)) | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp' 63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:76:20: note: in expansion of macro 'R_DT_Clog' 76 | return ::pow(- R_DT_Clog(p), 1./shape); | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log' 245 | RCPP_SUGAR_COMPLEX( log, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:43:50: error: '::expm1' has not been declared 43 | #define R_Log1_Exp(x) ((x) > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x))) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:34: note: in expansion of macro 'R_Log1_Exp' 46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x)) | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp' 63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:76:20: note: in expansion of macro 'R_DT_Clog' 76 | return ::pow(- R_DT_Clog(p), 1./shape); | ^~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:43:50: note: suggested alternatives: 43 | #define R_Log1_Exp(x) ((x) > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x))) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:34: note: in expansion of macro 'R_Log1_Exp' 46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x)) | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp' 63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:76:20: note: in expansion of macro 'R_DT_Clog' 76 | return ::pow(- R_DT_Clog(p), 1./shape); | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1' 2383 | expm1(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:19: note: 'Rcpp::expm1' 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:43:64: error: '::log1p' has not been declared 43 | #define R_Log1_Exp(x) ((x) > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x))) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:34: note: in expansion of macro 'R_Log1_Exp' 46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x)) | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp' 63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:76:20: note: in expansion of macro 'R_DT_Clog' 76 | return ::pow(- R_DT_Clog(p), 1./shape); | ^~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:43:64: note: suggested alternatives: 43 | #define R_Log1_Exp(x) ((x) > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x))) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:34: note: in expansion of macro 'R_Log1_Exp' 46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x)) | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp' 63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:76:20: note: in expansion of macro 'R_DT_Clog' 76 | return ::pow(- R_DT_Clog(p), 1./shape); | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p' 2524 | log1p(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p' 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:43:73: error: '::exp' has not been declared 43 | #define R_Log1_Exp(x) ((x) > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x))) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:34: note: in expansion of macro 'R_Log1_Exp' 46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x)) | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp' 63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:76:20: note: in expansion of macro 'R_DT_Clog' 76 | return ::pow(- R_DT_Clog(p), 1./shape); | ^~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:43:73: note: suggested alternatives: 43 | #define R_Log1_Exp(x) ((x) > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x))) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:34: note: in expansion of macro 'R_Log1_Exp' 46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x)) | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp' 63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:76:20: note: in expansion of macro 'R_DT_Clog' 76 | return ::pow(- R_DT_Clog(p), 1./shape); | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp' 244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:52: error: '::log1p' has not been declared 46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x)) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp' 63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:76:20: note: in expansion of macro 'R_DT_Clog' 76 | return ::pow(- R_DT_Clog(p), 1./shape); | ^~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:52: note: suggested alternatives: 46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x)) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp' 63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:76:20: note: in expansion of macro 'R_DT_Clog' 76 | return ::pow(- R_DT_Clog(p), 1./shape); | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p' 2524 | log1p(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p' 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:39:46: error: '::log' has not been declared 39 | #define R_D_log(p) (log_p ? (p) : ::log(p)) /* log(p) */ | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:51: note: in expansion of macro 'R_D_log' 63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/ | ^~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:76:20: note: in expansion of macro 'R_DT_Clog' 76 | return ::pow(- R_DT_Clog(p), 1./shape); | ^~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:39:46: note: suggested alternatives: 39 | #define R_D_log(p) (log_p ? (p) : ::log(p)) /* log(p) */ | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:51: note: in expansion of macro 'R_D_log' 63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/ | ^~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/weibull.h:76:20: note: in expansion of macro 'R_DT_Clog' 76 | return ::pow(- R_DT_Clog(p), 1./shape); | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log' 245 | RCPP_SUGAR_COMPLEX( log, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/stats.h:39: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h: In function 'double Rcpp::stats::dlogis_0(double, int)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:35:11: error: '::exp' has not been declared 35 | e = ::exp(-::fabs(x)); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:35:11: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp' 244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:35:18: error: '::fabs' has not been declared; did you mean 'std::fabs'? 35 | e = ::exp(-::fabs(x)); | ^~~~ | std::fabs /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2429:5: note: 'std::fabs' declared here 2429 | fabs(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:37:31: error: '::log' has not been declared 37 | return give_log ? -(x + ::log(f * f)) : e / (f * f); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:37:31: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log' 245 | RCPP_SUGAR_COMPLEX( log, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h: In function 'double Rcpp::stats::dlogis_1(double, double, int)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:47:11: error: '::fabs' has not been declared; did you mean 'std::fabs'? 47 | x = ::fabs((x - location)); | ^~~~ | std::fabs /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:2429:5: note: 'std::fabs' declared here 2429 | fabs(const std::complex<_Tp>& __z) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:48:11: error: '::exp' has not been declared 48 | e = ::exp(-x); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:48:11: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp' 244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:50:31: error: '::log' has not been declared 50 | return give_log ? -(x + ::log(f * f)) : e / (f * f); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:50:31: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log' 245 | RCPP_SUGAR_COMPLEX( log, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h: In function 'double Rcpp::stats::plogis_0(double, int, int)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:64:11: error: '::exp' has not been declared 64 | x = ::exp(lower_tail ? -x : x); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:64:11: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp' 244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:65:24: error: '::log1p' has not been declared 65 | return (log_p ? -::log1p(x) : 1 / (1 + x)); | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:65:24: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p' 2524 | log1p(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p' 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h: In function 'double Rcpp::stats::plogis_1(double, double, int, int)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:80:11: error: '::exp' has not been declared 80 | x = ::exp(lower_tail ? -x : x); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:80:11: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp' 244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:81:24: error: '::log1p' has not been declared 81 | return (log_p ? -::log1p(x) : 1 / (1 + x)); | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:81:24: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p' 2524 | log1p(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p' 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h: In function 'double Rcpp::stats::qlogis_0(double, int, int)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:95:23: error: '::log1p' has not been declared 95 | p = p - ::log1p(- ::exp(p)); | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:95:23: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p' 2524 | log1p(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p' 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:95:33: error: '::exp' has not been declared 95 | p = p - ::log1p(- ::exp(p)); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:95:33: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp' 244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:97:19: error: '::log1p' has not been declared 97 | p = ::log1p(- ::exp(p)) - p; | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:97:19: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p' 2524 | log1p(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p' 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:97:29: error: '::exp' has not been declared 97 | p = ::log1p(- ::exp(p)) - p; | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:97:29: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp' 244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:100:15: error: '::log' has not been declared 100 | p = ::log(lower_tail ? (p / (1. - p)) : ((1. - p) / p)); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:100:15: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log' 245 | RCPP_SUGAR_COMPLEX( log, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h: In function 'double Rcpp::stats::qlogis_1(double, double, int, int)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:117:23: error: '::log1p' has not been declared 117 | p = p - ::log1p(- ::exp(p)); | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:117:23: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p' 2524 | log1p(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p' 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:117:33: error: '::exp' has not been declared 117 | p = p - ::log1p(- ::exp(p)); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:117:33: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp' 244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:119:19: error: '::log1p' has not been declared 119 | p = ::log1p(- ::exp(p)) - p; | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:119:19: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p' 2524 | log1p(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p' 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:119:29: error: '::exp' has not been declared 119 | p = ::log1p(- ::exp(p)) - p; | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:119:29: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp' 244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:122:15: error: '::log' has not been declared 122 | p = ::log(lower_tail ? (p / (1. - p)) : ((1. - p) / p)); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/logis.h:122:15: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log' 245 | RCPP_SUGAR_COMPLEX( log, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/stats.h:41: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h: In function 'double Rcpp::stats::d_exp_0(double, int)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:39:32: error: '::exp' has not been declared 39 | return give_log ? (-x) : ::exp(-x); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:39:32: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp' 244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h: In function 'double Rcpp::stats::q_exp_0(double, int, int)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:43:43: error: '::log' has not been declared 43 | #define R_Log1_Exp(x) ((x) > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x))) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:34: note: in expansion of macro 'R_Log1_Exp' 46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x)) | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp' 63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:51:14: note: in expansion of macro 'R_DT_Clog' 51 | return - R_DT_Clog(p); | ^~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:43:43: note: suggested alternatives: 43 | #define R_Log1_Exp(x) ((x) > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x))) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:34: note: in expansion of macro 'R_Log1_Exp' 46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x)) | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp' 63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:51:14: note: in expansion of macro 'R_DT_Clog' 51 | return - R_DT_Clog(p); | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log' 245 | RCPP_SUGAR_COMPLEX( log, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:43:50: error: '::expm1' has not been declared 43 | #define R_Log1_Exp(x) ((x) > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x))) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:34: note: in expansion of macro 'R_Log1_Exp' 46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x)) | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp' 63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:51:14: note: in expansion of macro 'R_DT_Clog' 51 | return - R_DT_Clog(p); | ^~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:43:50: note: suggested alternatives: 43 | #define R_Log1_Exp(x) ((x) > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x))) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:34: note: in expansion of macro 'R_Log1_Exp' 46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x)) | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp' 63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:51:14: note: in expansion of macro 'R_DT_Clog' 51 | return - R_DT_Clog(p); | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1' 2383 | expm1(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:19: note: 'Rcpp::expm1' 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:43:64: error: '::log1p' has not been declared 43 | #define R_Log1_Exp(x) ((x) > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x))) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:34: note: in expansion of macro 'R_Log1_Exp' 46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x)) | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp' 63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:51:14: note: in expansion of macro 'R_DT_Clog' 51 | return - R_DT_Clog(p); | ^~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:43:64: note: suggested alternatives: 43 | #define R_Log1_Exp(x) ((x) > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x))) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:34: note: in expansion of macro 'R_Log1_Exp' 46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x)) | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp' 63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:51:14: note: in expansion of macro 'R_DT_Clog' 51 | return - R_DT_Clog(p); | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p' 2524 | log1p(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p' 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:43:73: error: '::exp' has not been declared 43 | #define R_Log1_Exp(x) ((x) > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x))) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:34: note: in expansion of macro 'R_Log1_Exp' 46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x)) | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp' 63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:51:14: note: in expansion of macro 'R_DT_Clog' 51 | return - R_DT_Clog(p); | ^~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:43:73: note: suggested alternatives: 43 | #define R_Log1_Exp(x) ((x) > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x))) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:34: note: in expansion of macro 'R_Log1_Exp' 46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x)) | ^~~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp' 63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:51:14: note: in expansion of macro 'R_DT_Clog' 51 | return - R_DT_Clog(p); | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp' 244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:52: error: '::log1p' has not been declared 46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x)) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp' 63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:51:14: note: in expansion of macro 'R_DT_Clog' 51 | return - R_DT_Clog(p); | ^~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:46:52: note: suggested alternatives: 46 | #define R_D_LExp(x) (log_p ? R_Log1_Exp(x) : ::log1p(-x)) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:38: note: in expansion of macro 'R_D_LExp' 63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:51:14: note: in expansion of macro 'R_DT_Clog' 51 | return - R_DT_Clog(p); | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p' 2524 | log1p(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p' 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:39:46: error: '::log' has not been declared 39 | #define R_D_log(p) (log_p ? (p) : ::log(p)) /* log(p) */ | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:51: note: in expansion of macro 'R_D_log' 63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/ | ^~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:51:14: note: in expansion of macro 'R_DT_Clog' 51 | return - R_DT_Clog(p); | ^~~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:39:46: note: suggested alternatives: 39 | #define R_D_log(p) (log_p ? (p) : ::log(p)) /* log(p) */ | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:63:51: note: in expansion of macro 'R_D_log' 63 | #define R_DT_Clog(p) (lower_tail? R_D_LExp(p): R_D_log(p))/* log(1-p) in qF*/ | ^~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:51:14: note: in expansion of macro 'R_DT_Clog' 51 | return - R_DT_Clog(p); | ^~~~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log' 245 | RCPP_SUGAR_COMPLEX( log, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h: In function 'double Rcpp::stats::p_exp_0(double, int, int)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:66:35: error: '::log' has not been declared 66 | ? (x > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x))) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:66:35: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log' 245 | RCPP_SUGAR_COMPLEX( log, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:66:42: error: '::expm1' has not been declared 66 | ? (x > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x))) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:66:42: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1' 2383 | expm1(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:19: note: 'Rcpp::expm1' 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:66:56: error: '::log1p' has not been declared 66 | ? (x > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x))) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:66:56: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2524:5: note: 'std::log1p' 2524 | log1p(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:51:19: note: 'Rcpp::log1p' 51 | VECTORIZED_MATH_1(log1p , ::log1p ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:66:65: error: '::exp' has not been declared 66 | ? (x > -M_LN2 ? ::log(-::expm1(x)) : ::log1p(-::exp(x))) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:66:65: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp' 244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:67:22: error: '::expm1' has not been declared 67 | : -::expm1(x)); | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:67:22: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/cmath:2383:5: note: 'std::expm1' 2383 | expm1(_Tp __x) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/math.h:50:19: note: 'Rcpp::expm1' 50 | VECTORIZED_MATH_1(expm1 , ::expm1 ) | ^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/block/Vectorized_Math.h:94:9: note: in definition of macro 'VECTORIZED_MATH_1' 94 | __NAME__( const VectorBase& t ){ \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:38:46: error: '::exp' has not been declared 38 | #define R_D_exp(x) (log_p ? (x) : ::exp(x)) /* exp(x) */ | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:69:12: note: in expansion of macro 'R_D_exp' 69 | return R_D_exp(x); | ^~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/dpq/macros.h:38:46: note: suggested alternatives: 38 | #define R_D_exp(x) (log_p ? (x) : ::exp(x)) /* exp(x) */ | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/exp.h:69:12: note: in expansion of macro 'R_D_exp' 69 | return R_D_exp(x); | ^~~~~~~ /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp' 244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/random.h:38, from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/stats.h:56: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlnorm.h: In member function 'double Rcpp::stats::LNormGenerator::operator()() const': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlnorm.h:35:18: error: '::exp' has not been declared 35 | return ::exp( meanlog + sdlog * ::norm_rand() ) ; | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlnorm.h:35:18: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp' 244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlnorm.h: In member function 'double Rcpp::stats::LNormGenerator_1::operator()() const': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlnorm.h:51:18: error: '::exp' has not been declared 51 | return ::exp( meanlog + ::norm_rand() ) ; | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlnorm.h:51:18: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp' 244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlnorm.h: In member function 'double Rcpp::stats::LNormGenerator_0::operator()() const': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlnorm.h:65:18: error: '::exp' has not been declared 65 | return ::exp(::norm_rand() ) ; | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlnorm.h:65:18: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp' 244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/random.h:42: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rt.h: In member function 'double Rcpp::stats::TGenerator::operator()() const': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rt.h:41:24: error: '::sqrt' has not been declared 41 | return num / ::sqrt( ::Rf_rgamma(df_2, 2.0) / df); | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rt.h:41:24: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1199:5: note: 'std::sqrt' 1199 | sqrt(const complex<_Tp>& __z) { return __complex_sqrt(__z); } | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:246:21: note: 'Rcpp::sqrt' 246 | RCPP_SUGAR_COMPLEX( sqrt, Rcomplex ) | ^~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/random.h:44: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rcauchy.h: In member function 'double Rcpp::stats::CauchyGenerator::operator()() const': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rcauchy.h:35:37: error: '::tan' has not been declared 35 | return location + scale * ::tan(M_PI * unif_rand()) ; | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rcauchy.h:35:37: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1226:5: note: 'std::tan' 1226 | tan(const complex<_Tp>& __z) { return __complex_tan(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:249:21: note: 'Rcpp::tan' 249 | RCPP_SUGAR_COMPLEX( tan, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rcauchy.h: In member function 'double Rcpp::stats::CauchyGenerator_1::operator()() const': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rcauchy.h:49:29: error: '::tan' has not been declared 49 | return location + ::tan(M_PI * unif_rand()) ; | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rcauchy.h:49:29: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1226:5: note: 'std::tan' 1226 | tan(const complex<_Tp>& __z) { return __complex_tan(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:249:21: note: 'Rcpp::tan' 249 | RCPP_SUGAR_COMPLEX( tan, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rcauchy.h: In member function 'double Rcpp::stats::CauchyGenerator_0::operator()() const': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rcauchy.h:62:18: error: '::tan' has not been declared 62 | return ::tan(M_PI * unif_rand()) ; | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rcauchy.h:62:18: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1226:5: note: 'std::tan' 1226 | tan(const complex<_Tp>& __z) { return __complex_tan(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:249:21: note: 'Rcpp::tan' 249 | RCPP_SUGAR_COMPLEX( tan, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/random.h:50: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rweibull.h: In member function 'double Rcpp::stats::WeibullGenerator::operator()() const': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rweibull.h:35:35: error: '::log' has not been declared 35 | return scale * ::R_pow(-::log(unif_rand()), shape_inv ); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rweibull.h:35:35: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log' 245 | RCPP_SUGAR_COMPLEX( log, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rweibull.h: In member function 'double Rcpp::stats::WeibullGenerator__scale1::operator()() const': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rweibull.h:49:27: error: '::log' has not been declared 49 | return ::R_pow(-::log(unif_rand()), shape_inv ); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rweibull.h:49:27: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log' 245 | RCPP_SUGAR_COMPLEX( log, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/random.h:51: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlogis.h: In member function 'double Rcpp::stats::LogisGenerator::operator()() const': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlogis.h:36:37: error: '::log' has not been declared 36 | return location + scale * ::log(u / (1. - u)); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlogis.h:36:37: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log' 245 | RCPP_SUGAR_COMPLEX( log, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlogis.h: In member function 'double Rcpp::stats::LogisGenerator_1::operator()() const': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlogis.h:53:29: error: '::log' has not been declared 53 | return location + ::log(u / (1. - u)); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlogis.h:53:29: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log' 245 | RCPP_SUGAR_COMPLEX( log, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlogis.h: In member function 'double Rcpp::stats::LogisGenerator_0::operator()() const': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlogis.h:68:18: error: '::log' has not been declared 68 | return ::log(u / (1. - u)); | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/rlogis.h:68:18: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1090:5: note: 'std::log' 1090 | log(const complex<_Tp>& __z) { return __complex_log(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:245:21: note: 'Rcpp::log' 245 | RCPP_SUGAR_COMPLEX( log, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/random.h: In function 'Rcpp::NumericVector Rcpp::rlnorm(int, double, double)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/random.h:198:36: error: '::exp' has not been declared 198 | return NumericVector( n, ::exp( meanlog ) ) ; | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/random.h:198:36: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp' 244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/random.h: In function 'Rcpp::NumericVector Rcpp::rlnorm(int, double)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/random.h:209:36: error: '::exp' has not been declared 209 | return NumericVector( n, ::exp( meanlog ) ) ; | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/stats/random/random.h:209:36: note: suggested alternatives: /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/complex:1063:5: note: 'std::exp' 1063 | exp(const complex<_Tp>& __z) { return __complex_exp(__z); } | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:244:21: note: 'Rcpp::exp' 244 | RCPP_SUGAR_COMPLEX( exp, Rcomplex ) | ^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/sugar/functions/complex.h:234:5: note: in definition of macro 'RCPP_SUGAR_COMPLEX' 234 | __NAME__(const VectorBase& t) { \ | ^~~~~~~~ In file included from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/api/meat/meat.h:36, from /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp.h:90: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/api/meat/DottedPairImpl.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/api/meat/DottedPairImpl.h:49:51: error: 'size_t' does not name a type 49 | void DottedPairImpl::insert( const size_t& index, const T& object) { | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/api/meat/DottedPairImpl.h:1:1: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' +++ |+#include 1 | // Copyright (C) 2013 Romain Francois /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/api/meat/DottedPairImpl.h: In member function 'void Rcpp::DottedPairImpl::insert(const int&, const T&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/api/meat/DottedPairImpl.h:67:25: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 67 | size_t i=1; | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/api/meat/DottedPairImpl.h:69:32: error: 'i' was not declared in this scope 69 | while( i < index ){ | ^ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/api/meat/DottedPairImpl.h: At global scope: /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/api/meat/DottedPairImpl.h:101:47: error: 'size_t' does not name a type 101 | void DottedPairImpl::remove( const size_t& index ) { | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/api/meat/DottedPairImpl.h:101:47: note: 'size_t' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/api/meat/DottedPairImpl.h: In member function 'void Rcpp::DottedPairImpl::remove(const int&)': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/api/meat/DottedPairImpl.h:116:13: error: 'size_t' was not declared in this scope; did you mean 'std::size_t'? 116 | size_t i=1; | ^~~~~~ | std::size_t /home/biocbuild/miniforge3/lib/gcc/aarch64-conda-linux-gnu/14.2.0/include/c++/aarch64-conda-linux-gnu/bits/c++config.h:310:33: note: 'std::size_t' declared here 310 | typedef __SIZE_TYPE__ size_t; | ^~~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/api/meat/DottedPairImpl.h:117:20: error: 'i' was not declared in this scope; did you mean 'is'? 117 | while( i]': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:348:85: required from here 348 | inline String& operator+=(const std::wstring& s) { return append_wide_string(s); } | ~~~~~~~~~~~~~~~~~~^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:336:47: error: 'strlen' was not declared in this scope 336 | std::wstring tmp(buf, buf + strlen(buf)); | ~~~~~~^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:336:47: note: 'strlen' is defined in header ''; this is probably fixable by adding '#include ' /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h: In instantiation of 'Rcpp::String& Rcpp::String::append_wide_string(const T&) [with T = const wchar_t*]': /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:349:80: required from here 349 | inline String& operator+=(const wchar_t* s) { return append_wide_string(s); } | ~~~~~~~~~~~~~~~~~~^~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:336:47: error: 'strlen' was not declared in this scope 336 | std::wstring tmp(buf, buf + strlen(buf)); | ~~~~~~^~~~~ /home/biocbuild/R/R-4.4.1/site-library/Rcpp/include/Rcpp/String.h:336:47: note: 'strlen' is defined in header ''; this is probably fixable by adding '#include ' make: *** [/home/biocbuild/R/R-4.4.1/etc/Makeconf:204: RcppExports.o] Error 1 ERROR: compilation failed for package ‘pqsfinder’ * removing ‘/home/biocbuild/R/R-4.4.1/site-library/pqsfinder’ * restoring previous ‘/home/biocbuild/R/R-4.4.1/site-library/pqsfinder’