############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data phyloseq ### ############################################################################## ############################################################################## * checking for file ‘phyloseq/DESCRIPTION’ ... OK * preparing ‘phyloseq’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘phyloseq-FAQ.Rmd’ using rmarkdown 2024-08-20 18:18:12.583 R[46584:80557130] XType: com.apple.fonts is not accessible. 2024-08-20 18:18:12.583 R[46584:80557130] XType: XTFontStaticRegistry is enabled. Could not fetch http://i.imgur.com/j9NYXiQ.png HttpExceptionRequest Request { host = "i.imgur.com" port = 80 secure = False requestHeaders = [] path = "/j9NYXiQ.png" queryString = "" method = "GET" proxy = Nothing rawBody = False redirectCount = 10 responseTimeout = ResponseTimeoutDefault requestVersion = HTTP/1.1 } (ConnectionFailure Network.Socket.getAddrInfo (called with preferred socket type/protocol: AddrInfo {addrFlags = [AI_ADDRCONFIG], addrFamily = AF_UNSPEC, addrSocketType = Stream, addrProtocol = 0, addrAddress = , addrCanonName = }, host name: Just "i.imgur.com", service name: Just "80"): does not exist (nodename nor servname provided, or not known)) Error: processing vignette 'phyloseq-FAQ.Rmd' failed with diagnostics: pandoc document conversion failed with error 61 --- failed re-building ‘phyloseq-FAQ.Rmd’ --- re-building ‘phyloseq-analysis.Rmd’ using rmarkdown --- finished re-building ‘phyloseq-analysis.Rmd’ --- re-building ‘phyloseq-basics.Rmd’ using rmarkdown [WARNING] Could not parse YAML metadata at line 182 column 1: not an object [WARNING] Could not parse YAML metadata at line 346 column 1: not an object [WARNING] Could not parse YAML metadata at line 355 column 1: :3:3: Lexical error near " | --- | ---" [WARNING] Could not parse YAML metadata at line 428 column 1: :3:3: Lexical error near " | ---" --- finished re-building ‘phyloseq-basics.Rmd’ --- re-building ‘phyloseq-mixture-models.Rmd’ using rmarkdown --- finished re-building ‘phyloseq-mixture-models.Rmd’ SUMMARY: processing the following file failed: ‘phyloseq-FAQ.Rmd’ Error: Vignette re-building failed. Execution halted