##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data pareg
###
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* checking for file ‘pareg/DESCRIPTION’ ... OK
* preparing ‘pareg’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘pareg.Rmd’ using rmarkdown
2024-08-15 17:27:33.574 R[68206:48213246] XType: com.apple.fonts is not accessible.
2024-08-15 17:27:33.574 R[68206:48213246] XType: XTFontStaticRegistry is enabled.
Retrieving notices: ...working... Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NameResolutionError("<urllib3.connection.HTTPSConnection object at 0x10749e710>: Failed to resolve 'conda.anaconda.org' ([Errno 8] nodename nor servname provided, or not known)")': /anaconda/notices.json

Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NameResolutionError("<urllib3.connection.HTTPSConnection object at 0x10749e800>: Failed to resolve 'conda.anaconda.org' ([Errno 8] nodename nor servname provided, or not known)")': /anaconda/notices.json

Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NameResolutionError("<urllib3.connection.HTTPSConnection object at 0x10749ea70>: Failed to resolve 'conda.anaconda.org' ([Errno 8] nodename nor servname provided, or not known)")': /anaconda/notices.json

ERROR conda.notices.fetch:get_channel_notice_response(71): Request error <HTTPSConnectionPool(host='conda.anaconda.org', port=443): Max retries exceeded with url: /anaconda/notices.json (Caused by NameResolutionError("<urllib3.connection.HTTPSConnection object at 0x10749ec50>: Failed to resolve 'conda.anaconda.org' ([Errno 8] nodename nor servname provided, or not known)"))> for channel: anaconda url: https://conda.anaconda.org/anaconda/notices.json
done
Channels:
 - anaconda
Platform: osx-64
Collecting package metadata (repodata.json): ...working... Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NameResolutionError("<urllib3.connection.HTTPSConnection object at 0x1077df3a0>: Failed to resolve 'conda.anaconda.org' ([Errno 8] nodename nor servname provided, or not known)")': /anaconda/osx-64/repodata.json.zst

Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NameResolutionError("<urllib3.connection.HTTPSConnection object at 0x1077df1f0>: Failed to resolve 'conda.anaconda.org' ([Errno 8] nodename nor servname provided, or not known)")': /anaconda/noarch/repodata.json.zst

Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NameResolutionError("<urllib3.connection.HTTPSConnection object at 0x1077df700>: Failed to resolve 'conda.anaconda.org' ([Errno 8] nodename nor servname provided, or not known)")': /anaconda/noarch/repodata.json.zst

Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NameResolutionError("<urllib3.connection.HTTPSConnection object at 0x1077df610>: Failed to resolve 'conda.anaconda.org' ([Errno 8] nodename nor servname provided, or not known)")': /anaconda/osx-64/repodata.json.zst

Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NameResolutionError("<urllib3.connection.HTTPSConnection object at 0x1077dfa60>: Failed to resolve 'conda.anaconda.org' ([Errno 8] nodename nor servname provided, or not known)")': /anaconda/osx-64/repodata.json.zst

Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NameResolutionError("<urllib3.connection.HTTPSConnection object at 0x1077df970>: Failed to resolve 'conda.anaconda.org' ([Errno 8] nodename nor servname provided, or not known)")': /anaconda/noarch/repodata.json.zst

failed

CondaHTTPError: HTTP 000 CONNECTION FAILED for url <https://conda.anaconda.org/anaconda/osx-64/repodata.json>
Elapsed: -

An HTTP error occurred when trying to retrieve this URL.
HTTP errors are often intermittent, and a simple retry will get you on your way.
'https//conda.anaconda.org/anaconda/osx-64'



Quitting from lines 145-150 [unnamed-chunk-9] (pareg.Rmd)
Error: processing vignette 'pareg.Rmd' failed with diagnostics:
Error creating conda environment '/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.17.2/pareg/1.9.0/pareg' [exit code 1]
--- failed re-building ‘pareg.Rmd’

--- re-building ‘pathway_similarities.Rmd’ using rmarkdown
--- finished re-building ‘pathway_similarities.Rmd’

SUMMARY: processing the following file failed:
  ‘pareg.Rmd’

Error: Vignette re-building failed.
Execution halted