############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL netresponse ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘netresponse’ ... ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c netresponse.c -o netresponse.o netresponse.c: In function ‘mHPpost’: netresponse.c:264:15: warning: unused variable ‘prior_fields’ [-Wunused-variable] 264 | const char *prior_fields[]={"Mumu","S2mu", | ^~~~~~~~~~~~ netresponse.c: In function ‘mLogLambda’: netresponse.c:713:3: warning: ‘Mumu’ may be used uninitialized [-Wmaybe-uninitialized] 713 | vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 | AlphaKsi, BetaKsi, KsiAlpha, KsiBeta, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 | post_gamma, log_lambda, prior_alpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 | U_p, U_hat, | ~~~~~~~~~~~ 717 | datalen, dim1, dim2, data1, data2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 | Ns, ncentroids, implicitnoisevar); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ netresponse.c:655:11: note: ‘Mumu’ was declared here 655 | double *Mumu, *S2mu, *Mubar, *Mutilde, | ^~~~ netresponse.c:713:3: warning: ‘S2mu’ may be used uninitialized [-Wmaybe-uninitialized] 713 | vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 | AlphaKsi, BetaKsi, KsiAlpha, KsiBeta, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 | post_gamma, log_lambda, prior_alpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 | U_p, U_hat, | ~~~~~~~~~~~ 717 | datalen, dim1, dim2, data1, data2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 | Ns, ncentroids, implicitnoisevar); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ netresponse.c:655:18: note: ‘S2mu’ was declared here 655 | double *Mumu, *S2mu, *Mubar, *Mutilde, | ^~~~ netresponse.c:713:3: warning: ‘Mubar’ may be used uninitialized [-Wmaybe-uninitialized] 713 | vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 | AlphaKsi, BetaKsi, KsiAlpha, KsiBeta, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 | post_gamma, log_lambda, prior_alpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 | U_p, U_hat, | ~~~~~~~~~~~ 717 | datalen, dim1, dim2, data1, data2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 | Ns, ncentroids, implicitnoisevar); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ netresponse.c:655:25: note: ‘Mubar’ was declared here 655 | double *Mumu, *S2mu, *Mubar, *Mutilde, | ^~~~~ netresponse.c:713:3: warning: ‘Mutilde’ may be used uninitialized [-Wmaybe-uninitialized] 713 | vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 | AlphaKsi, BetaKsi, KsiAlpha, KsiBeta, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 | post_gamma, log_lambda, prior_alpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 | U_p, U_hat, | ~~~~~~~~~~~ 717 | datalen, dim1, dim2, data1, data2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 | Ns, ncentroids, implicitnoisevar); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ netresponse.c:655:33: note: ‘Mutilde’ was declared here 655 | double *Mumu, *S2mu, *Mubar, *Mutilde, | ^~~~~~~ netresponse.c:713:3: warning: ‘AlphaKsi’ may be used uninitialized [-Wmaybe-uninitialized] 713 | vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 | AlphaKsi, BetaKsi, KsiAlpha, KsiBeta, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 | post_gamma, log_lambda, prior_alpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 | U_p, U_hat, | ~~~~~~~~~~~ 717 | datalen, dim1, dim2, data1, data2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 | Ns, ncentroids, implicitnoisevar); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ netresponse.c:656:6: note: ‘AlphaKsi’ was declared here 656 | *AlphaKsi, *BetaKsi, *KsiAlpha, *KsiBeta, *U_p, *prior_alpha, | ^~~~~~~~ netresponse.c:713:3: warning: ‘BetaKsi’ may be used uninitialized [-Wmaybe-uninitialized] 713 | vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 | AlphaKsi, BetaKsi, KsiAlpha, KsiBeta, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 | post_gamma, log_lambda, prior_alpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 | U_p, U_hat, | ~~~~~~~~~~~ 717 | datalen, dim1, dim2, data1, data2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 | Ns, ncentroids, implicitnoisevar); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ netresponse.c:656:17: note: ‘BetaKsi’ was declared here 656 | *AlphaKsi, *BetaKsi, *KsiAlpha, *KsiBeta, *U_p, *prior_alpha, | ^~~~~~~ netresponse.c:713:3: warning: ‘KsiAlpha’ may be used uninitialized [-Wmaybe-uninitialized] 713 | vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 | AlphaKsi, BetaKsi, KsiAlpha, KsiBeta, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 | post_gamma, log_lambda, prior_alpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 | U_p, U_hat, | ~~~~~~~~~~~ 717 | datalen, dim1, dim2, data1, data2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 | Ns, ncentroids, implicitnoisevar); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ netresponse.c:656:27: note: ‘KsiAlpha’ was declared here 656 | *AlphaKsi, *BetaKsi, *KsiAlpha, *KsiBeta, *U_p, *prior_alpha, | ^~~~~~~~ netresponse.c:713:3: warning: ‘KsiBeta’ may be used uninitialized [-Wmaybe-uninitialized] 713 | vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 | AlphaKsi, BetaKsi, KsiAlpha, KsiBeta, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 | post_gamma, log_lambda, prior_alpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 | U_p, U_hat, | ~~~~~~~~~~~ 717 | datalen, dim1, dim2, data1, data2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 | Ns, ncentroids, implicitnoisevar); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ netresponse.c:656:38: note: ‘KsiBeta’ was declared here 656 | *AlphaKsi, *BetaKsi, *KsiAlpha, *KsiBeta, *U_p, *prior_alpha, | ^~~~~~~ netresponse.c:713:3: warning: ‘U_p’ may be used uninitialized [-Wmaybe-uninitialized] 713 | vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 | AlphaKsi, BetaKsi, KsiAlpha, KsiBeta, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 | post_gamma, log_lambda, prior_alpha, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 | U_p, U_hat, | ~~~~~~~~~~~ 717 | datalen, dim1, dim2, data1, data2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 | Ns, ncentroids, implicitnoisevar); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ netresponse.c:656:48: note: ‘U_p’ was declared here 656 | *AlphaKsi, *BetaKsi, *KsiAlpha, *KsiBeta, *U_p, *prior_alpha, | ^~~ gcc -shared -L/home/biocbuild/bbs-3.20-bioc/R/lib -L/usr/local/lib -o netresponse.so netresponse.o -L/home/biocbuild/bbs-3.20-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.20-bioc/R/site-library/00LOCK-netresponse/00new/netresponse/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (netresponse)