############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:methylSig.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings methylSig_1.17.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/methylSig.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0 GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0 * running under: Ubuntu 24.04.1 LTS * using session charset: UTF-8 * checking for file ‘methylSig/DESCRIPTION’ ... OK * this is package ‘methylSig’ version ‘1.17.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ...Warning in read.dcf(file = tmpf) : cannot open compressed file '/tmp/RtmpmvEg0t/file10384834dc3c28', probable reason 'No such file or directory' Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: cannot open the connection Warning in gzfile(file, "rb") : cannot open compressed file '/tmp/RtmpmvEg0t/repos_https%3A%2F%2Fbioconductor.org%2Fpackages%2F3.19%2Fbioc%2Fsrc%2Fcontrib.rds', probable reason 'No such file or directory' Warning in read.dcf(file = tmpf) : cannot open compressed file '/tmp/RtmpmvEg0t/file1038484f7cfc3a', probable reason 'No such file or directory' Warning: unable to access index for repository https://bioconductor.org/packages/3.19/bioc/src/contrib: cannot open the connection Warning in gzfile(file, "rb") : cannot open compressed file '/tmp/RtmpmvEg0t/repos_https%3A%2F%2Fbioconductor.org%2Fpackages%2F3.19%2Fdata%2Fannotation%2Fsrc%2Fcontrib.rds', probable reason 'No such file or directory' Warning in read.dcf(file = tmpf) : cannot open compressed file '/tmp/RtmpmvEg0t/file10384865bdc7a7', probable reason 'No such file or directory' Warning: unable to access index for repository https://bioconductor.org/packages/3.19/data/annotation/src/contrib: cannot open the connection Warning in gzfile(file, "rb") : cannot open compressed file '/tmp/RtmpmvEg0t/repos_https%3A%2F%2Fbioconductor.org%2Fpackages%2F3.19%2Fdata%2Fexperiment%2Fsrc%2Fcontrib.rds', probable reason 'No such file or directory' Warning in read.dcf(file = tmpf) : cannot open compressed file '/tmp/RtmpmvEg0t/file1038483a9d7c45', probable reason 'No such file or directory' Warning: unable to access index for repository https://bioconductor.org/packages/3.19/data/experiment/src/contrib: cannot open the connection Warning in gzfile(file, mode) : cannot open compressed file '/tmp/RtmpmvEg0t/runri1038482b957d42', probable reason 'No space left on device' Error in gzfile(file, mode) : cannot open the connection Execution halted