############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data methylPipe ### ############################################################################## ############################################################################## * checking for file ‘methylPipe/DESCRIPTION’ ... OK * preparing ‘methylPipe’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘methylPipe.rnw’ using knitr Warning in in_dir(input_dir(), expr) : You changed the working directory to /home/biocbuild/tmp/RtmpK4F8HO (probably via setwd()). It will be restored to /home/biocbuild/tmp/RtmppR9pI0/Rbuild2e85775285afe/methylPipe/vignettes. See the Note section in ?knitr::knit Quitting from lines 240-245 [pmeth] (methylPipe.rnw) Error: processing vignette 'methylPipe.rnw' failed with diagnostics: There doesn't seem to be any chromosome length data available for genome 'hg18' at UCSC or the service is temporarily down. --- failed re-building ‘methylPipe.rnw’ SUMMARY: processing the following file failed: ‘methylPipe.rnw’ Error: Vignette re-building failed. Execution halted