############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL gaga ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4.1/site-library’ * installing *source* package ‘gaga’ ... ** using staged installation ** libs using C compiler: ‘gcc (conda-forge gcc 14.2.0-1) 14.2.0’ gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c cseqdesma.c -o cseqdesma.o gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c cstat.c -o cstat.o cstat.c: In function 'free_vector': cstat.c:667:20: warning: the comparison will always evaluate as 'true' for the pointer operand in 'v + (sizetype)((long unsigned int)nl * 4)' must not be NULL [-Waddress] 667 | if( (v+nl) != NULL ) free((char *) (v+nl)); | ^~ cstat.c: In function 'free_dvector': cstat.c:673:20: warning: the comparison will always evaluate as 'true' for the pointer operand in 'v + (sizetype)((long unsigned int)nl * 8)' must not be NULL [-Waddress] 673 | if( (v+nl) != NULL ) free((char *) (v+nl)); | ^~ cstat.c: In function 'free_ivector': cstat.c:679:20: warning: the comparison will always evaluate as 'true' for the pointer operand in 'v + (sizetype)((long unsigned int)nl * 4)' must not be NULL [-Waddress] 679 | if( (v+nl) != NULL ) free((char *) (v+nl)); | ^~ cstat.c: In function 'free_dmatrix': cstat.c:687:47: warning: the comparison will always evaluate as 'true' for the pointer operand in '*(m + (sizetype)((long unsigned int)i * 8)) + (sizetype)((long unsigned int)ncl * 8)' must not be NULL [-Waddress] 687 | for(i=nrh;i>=nrl;i--) {if( (m[i]+ncl) != NULL ) | ^~ cstat.c:689:21: warning: the comparison will always evaluate as 'true' for the pointer operand in 'm + (sizetype)((long unsigned int)nrl * 8)' must not be NULL [-Waddress] 689 | if( (m+nrl) != NULL ) free((char *) (m+nrl)); | ^~ cstat.c: In function 'free_imatrix': cstat.c:697:47: warning: the comparison will always evaluate as 'true' for the pointer operand in '*(m + (sizetype)((long unsigned int)i * 8)) + (sizetype)((long unsigned int)ncl * 4)' must not be NULL [-Waddress] 697 | for(i=nrh;i>=nrl;i--) {if( (m[i]+ncl) != NULL ) | ^~ cstat.c:699:21: warning: the comparison will always evaluate as 'true' for the pointer operand in 'm + (sizetype)((long unsigned int)nrl * 8)' must not be NULL [-Waddress] 699 | if( (m+nrl) != NULL ) free((char *) (m+nrl)); | ^~ cstat.c: At top level: cstat.c:22:19: warning: 'css_c_sccs_id' defined but not used [-Wunused-const-variable=] 22 | static const char css_c_sccs_id[] = "@(#)$Workfile: rand.c$ $Revision: 5$"; | ^~~~~~~~~~~~~ cstat.c:21:19: warning: 'vector_c_sccs_id' defined but not used [-Wunused-const-variable=] 21 | static const char vector_c_sccs_id[] = "%W%"; | ^~~~~~~~~~~~~~~~ cstat.c:20:19: warning: 'nrutil_c_sccs_id' defined but not used [-Wunused-const-variable=] 20 | static const char nrutil_c_sccs_id[] = "%W%"; | ^~~~~~~~~~~~~~~~ cstat.c:19:19: warning: 'mess_c_sccs_id' defined but not used [-Wunused-const-variable=] 19 | static const char mess_c_sccs_id[] = "%W%"; | ^~~~~~~~~~~~~~ cstat.c:18:19: warning: 'interface_c_sccs_id' defined but not used [-Wunused-const-variable=] 18 | static const char interface_c_sccs_id[] = "%W%"; | ^~~~~~~~~~~~~~~~~~~ gcc -shared -L/home/biocbuild/R/R-4.4.1/lib -L/usr/local/lib -o gaga.so cseqdesma.o cstat.o -L/home/biocbuild/R/R-4.4.1/lib -lR installing to /home/biocbuild/R/R-4.4.1/site-library/00LOCK-gaga/00new/gaga/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gaga)