############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data escheR ### ############################################################################## ############################################################################## * checking for file ‘escheR/DESCRIPTION’ ... OK * preparing ‘escheR’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘SRT_eg.Rmd’ using rmarkdown Quitting from lines 79-84 [data.import] (SRT_eg.Rmd) Error: processing vignette 'SRT_eg.Rmd' failed with diagnostics: failed to connect reason: Timeout was reached: [bioconductor.org] Resolving timed out after 10125 milliseconds Consider rerunning with 'localHub=TRUE' --- failed re-building ‘SRT_eg.Rmd’ --- re-building ‘more_than_visium.Rmd’ using rmarkdown Quitting from lines 29-49 [redDim_spe] (more_than_visium.Rmd) Error: processing vignette 'more_than_visium.Rmd' failed with diagnostics: error in evaluating the argument 'x' in selecting a method for function 'logNormCounts': failed to connect reason: Timeout was reached: [bioconductor.org] Resolving timed out after 10054 milliseconds Consider rerunning with 'localHub=TRUE' --- failed re-building ‘more_than_visium.Rmd’ SUMMARY: processing the following files failed: ‘SRT_eg.Rmd’ ‘more_than_visium.Rmd’ Error: Vignette re-building failed. Execution halted