############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data dreamlet ### ############################################################################## ############################################################################## * checking for file ‘dreamlet/DESCRIPTION’ ... OK * preparing ‘dreamlet’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to process help pages Loading required namespace: variancePartition Loading required namespace: dreamlet * saving partial Rd database * creating vignettes ... ERROR --- re-building ‘cell_covs.Rmd’ using rmarkdown 2024-10-27 05:51:01.394 R[55568:34941063] XType: Using static font registry. Quitting from lines 114-130 [processAssays] (cell_covs.Rmd) Error: processing vignette 'cell_covs.Rmd' failed with diagnostics: C stack usage 7954656 is too close to the limit --- failed re-building ‘cell_covs.Rmd’ --- re-building ‘dreamlet.Rmd’ using rmarkdown Quitting from lines 192-202 [test] (dreamlet.Rmd) Error: processing vignette 'dreamlet.Rmd' failed with diagnostics: C stack usage 7954656 is too close to the limit --- failed re-building ‘dreamlet.Rmd’ --- re-building ‘errors.Rmd’ using rmarkdown --- finished re-building ‘errors.Rmd’ --- re-building ‘h5ad_on_disk.Rmd’ using rmarkdown --- finished re-building ‘h5ad_on_disk.Rmd’ --- re-building ‘mashr.Rmd’ using rmarkdown --- finished re-building ‘mashr.Rmd’ --- re-building ‘non_lin_eff.Rmd’ using rmarkdown Quitting from lines 95-116 [Age] (non_lin_eff.Rmd) Error: processing vignette 'non_lin_eff.Rmd' failed with diagnostics: C stack usage 7954016 is too close to the limit --- failed re-building ‘non_lin_eff.Rmd’ SUMMARY: processing the following files failed: ‘cell_covs.Rmd’ ‘dreamlet.Rmd’ ‘non_lin_eff.Rmd’ Error: Vignette re-building failed. Execution halted