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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD check --install=check:diffGeneAnalysis.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings diffGeneAnalysis_1.88.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/diffGeneAnalysis.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    gcc (GCC) 12.2.1 20220819 (openEuler 12.2.1-14)
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘diffGeneAnalysis/DESCRIPTION’ ... OK
* this is package ‘diffGeneAnalysis’ version ‘1.88.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘diffGeneAnalysis’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
curveFit: warning in assign("nmean", nmeans[1], inherits = TRUE, env =
  .GlobalEnv): partial argument match of 'env' to 'envir'
curveFit: warning in assign("nsd", nsds[1], inherits = TRUE, env =
  .GlobalEnv): partial argument match of 'env' to 'envir'
curveFit: warning in assign("nmean", nmeans[2], inherits = TRUE, env =
  .GlobalEnv): partial argument match of 'env' to 'envir'
curveFit: warning in assign("nsd", nsds[2], inherits = TRUE, env =
  .GlobalEnv): partial argument match of 'env' to 'envir'
curveFit: warning in assign("nmean", nmeans[3], inherits = TRUE, env =
  .GlobalEnv): partial argument match of 'env' to 'envir'
curveFit: warning in assign("nsd", nsds[3], inherits = TRUE, env =
  .GlobalEnv): partial argument match of 'env' to 'envir'
curveFit: warning in assign("nmean", nmeans[4], inherits = TRUE, env =
  .GlobalEnv): partial argument match of 'env' to 'envir'
curveFit: warning in assign("nsd", nsds[4], inherits = TRUE, env =
  .GlobalEnv): partial argument match of 'env' to 'envir'
curveFit: warning in assign("nmean", nmeans[5], inherits = TRUE, env =
  .GlobalEnv): partial argument match of 'env' to 'envir'
curveFit: warning in assign("nsd", nsds[5], inherits = TRUE, env =
  .GlobalEnv): partial argument match of 'env' to 'envir'
curveFit: warning in assign("nmean", nmeans[6], inherits = TRUE, env =
  .GlobalEnv): partial argument match of 'env' to 'envir'
curveFit: warning in assign("nsd", nsds[6], inherits = TRUE, env =
  .GlobalEnv): partial argument match of 'env' to 'envir'
curveFit: no visible binding for global variable ‘nmean’
curveFit: no visible binding for global variable ‘nsd’
Undefined global functions or variables:
  nmean nsd
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.20-bioc/meat/diffGeneAnalysis.Rcheck/00check.log’
for details.