############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data cTRAP ### ############################################################################## ############################################################################## * checking for file ‘cTRAP/DESCRIPTION’ ... OK * preparing ‘cTRAP’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘cTRAP.Rmd’ using rmarkdown trying URL 'https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE92742&format=file&file=GSE92742_Broad_LINCS_sig_info.txt.gz' Content type 'application/octet-stream' length 11124404 bytes (10.6 MB) ================================================== downloaded 10.6 MB trying URL 'https://compbio.imm.medicina.ulisboa.pt/public/cTRAP/expressionDrugSensitivityCorCTRP2.1.qs' Quitting from lines 341-350 [unnamed-chunk-4] (cTRAP.Rmd) Error: processing vignette 'cTRAP.Rmd' failed with diagnostics: cannot open URL 'https://compbio.imm.medicina.ulisboa.pt/public/cTRAP/expressionDrugSensitivityCorCTRP2.1.qs' --- failed re-building ‘cTRAP.Rmd’ SUMMARY: processing the following file failed: ‘cTRAP.Rmd’ Error: Vignette re-building failed. Execution halted