############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf biovizBase.buildbin-libdir && mkdir biovizBase.buildbin-libdir && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=biovizBase.buildbin-libdir biovizBase_1.54.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'biovizBase' ... ** using staged installation ** libs using C compiler: 'gcc.exe (GCC) 13.2.0' gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c R_init_biovizBase.c -o R_init_biovizBase.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bin_offsets.c -o bin_offsets.o bin_offsets.c: In function 'scan_bam_bin_offsets': bin_offsets.c:57:15: warning: pointer targets in passing argument 1 of 'strncmp' differ in signedness [-Wpointer-sign] 57 | if (strncmp(b, "BAI\1", 4)) | ^ | | | Rbyte * {aka unsigned char *} In file included from F:/biocbuild/bbs-3.20-bioc/R/include/R_ext/RS.h:34, from F:/biocbuild/bbs-3.20-bioc/R/include/Rdefines.h:38, from bin_offsets.h:1, from bin_offsets.c:3: C:/rtools44/x86_64-w64-mingw32.static.posix/include/string.h:86:35: note: expected 'const char *' but argument is of type 'Rbyte *' {aka 'unsigned char *'} 86 | int __cdecl strncmp(const char *_Str1,const char *_Str2,size_t _MaxCount); | ~~~~~~~~~~~~^~~~~ gcc -shared -s -static-libgcc -o biovizBase.dll tmp.def R_init_biovizBase.o bin_offsets.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.20-bioc/meat/biovizBase.buildbin-libdir/00LOCK-biovizBase/00new/biovizBase/libs/x64 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'biovizBase' as biovizBase_1.54.0.zip * DONE (biovizBase)