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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD INSTALL beachmat
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* installing to library ‘/home/biocbuild/R/R-4.4.1/site-library’
* installing *source* package ‘beachmat’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (conda-forge gcc 14.2.0-1) 14.2.0’
using C++17
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I../inst/include -I'/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.1/site-library/assorthead/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I../inst/include -I'/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.1/site-library/assorthead/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c delayed_isometric_binary.cpp -o delayed_isometric_binary.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I../inst/include -I'/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.1/site-library/assorthead/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c delayed_isometric_math.cpp -o delayed_isometric_math.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I../inst/include -I'/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.1/site-library/assorthead/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c delayed_isometric_unary.cpp -o delayed_isometric_unary.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I../inst/include -I'/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.1/site-library/assorthead/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c delayed_other.cpp -o delayed_other.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I../inst/include -I'/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.1/site-library/assorthead/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c dense_matrix.cpp -o dense_matrix.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I../inst/include -I'/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.1/site-library/assorthead/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c fragment_sparse_rows.cpp -o fragment_sparse_rows.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I../inst/include -I'/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.1/site-library/assorthead/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c sparse_matrix.cpp -o sparse_matrix.o
In file included from /home/biocbuild/R/R-4.4.1/site-library/assorthead/include/tatami/tatami.hpp:8,
                 from /home/biocbuild/R/R-4.4.1/site-library/assorthead/include/tatami_r/UnknownMatrix.hpp:5,
                 from /home/biocbuild/R/R-4.4.1/site-library/assorthead/include/tatami_r/tatami_r.hpp:4,
                 from ../inst/include/Rtatami.h:8,
                 from sparse_matrix.cpp:1:
/home/biocbuild/R/R-4.4.1/site-library/assorthead/include/tatami/sparse/CompressedSparseMatrix.hpp: In instantiation of 'tatami::CompressedSparseMatrix<Value_, Index_, ValueStorage_, IndexStorage_, PointerStorage_>::CompressedSparseMatrix(Index_, Index_, ValueStorage_, IndexStorage_, PointerStorage_, bool, bool) [with Value_ = double; Index_ = int; ValueStorage_ = tatami::ArrayView<int>; IndexStorage_ = tatami::ArrayView<int>; PointerStorage_ = tatami::ArrayView<int>]':
sparse_matrix.cpp:13:12:   required from 'tatami::NumericMatrix* store_sparse_matrix(XVector_, Rcpp::IntegerVector, Rcpp::IntegerVector, int, int, bool) [with T_ = int; XVector_ = Rcpp::Vector<10, Rcpp::PreserveStorage>; tatami::NumericMatrix = tatami::Matrix<double, int>; Rcpp::IntegerVector = Rcpp::Vector<13>]'
   13 |     return new SparseMat(nrow, ncol, std::move(x_view), std::move(i_view), std::move(p_view), byrow, false);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sparse_matrix.cpp:36:51:   required from here
   36 |         output->ptr.reset(store_sparse_matrix<int>(std::move(x), std::move(i), std::move(p), nrow, ncol, byrow));
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/assorthead/include/tatami/sparse/CompressedSparseMatrix.hpp:534:46: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
  534 |                 for (size_t j = start + 1; j < end; ++j) {
      |                                            ~~^~~~~
/home/biocbuild/R/R-4.4.1/site-library/assorthead/include/tatami/sparse/CompressedSparseMatrix.hpp: In instantiation of 'tatami::CompressedSparseMatrix<Value_, Index_, ValueStorage_, IndexStorage_, PointerStorage_>::CompressedSparseMatrix(Index_, Index_, ValueStorage_, IndexStorage_, PointerStorage_, bool, bool) [with Value_ = double; Index_ = int; ValueStorage_ = tatami::ArrayView<double>; IndexStorage_ = tatami::ArrayView<int>; PointerStorage_ = tatami::ArrayView<int>]':
sparse_matrix.cpp:13:12:   required from 'tatami::NumericMatrix* store_sparse_matrix(XVector_, Rcpp::IntegerVector, Rcpp::IntegerVector, int, int, bool) [with T_ = double; XVector_ = Rcpp::Vector<14, Rcpp::PreserveStorage>; tatami::NumericMatrix = tatami::Matrix<double, int>; Rcpp::IntegerVector = Rcpp::Vector<13>]'
   13 |     return new SparseMat(nrow, ncol, std::move(x_view), std::move(i_view), std::move(p_view), byrow, false);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sparse_matrix.cpp:40:54:   required from here
   40 |         output->ptr.reset(store_sparse_matrix<double>(std::move(x), std::move(i), std::move(p), nrow, ncol, byrow));
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/R/R-4.4.1/site-library/assorthead/include/tatami/sparse/CompressedSparseMatrix.hpp:534:46: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
  534 |                 for (size_t j = start + 1; j < end; ++j) {
      |                                            ~~^~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I../inst/include -I'/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.1/site-library/assorthead/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c tatami_utils.cpp -o tatami_utils.o
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I../inst/include -I'/home/biocbuild/R/R-4.4.1/site-library/Rcpp/include' -I'/home/biocbuild/R/R-4.4.1/site-library/assorthead/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c unknown_matrix.cpp -o unknown_matrix.o
g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.4.1/lib -L/usr/local/lib -o beachmat.so RcppExports.o delayed_isometric_binary.o delayed_isometric_math.o delayed_isometric_unary.o delayed_other.o dense_matrix.o fragment_sparse_rows.o sparse_matrix.o tatami_utils.o unknown_matrix.o -L/home/biocbuild/R/R-4.4.1/lib -lR
installing to /home/biocbuild/R/R-4.4.1/site-library/00LOCK-beachmat/00new/beachmat/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (beachmat)