##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data VariantAnnotation
###
##############################################################################
##############################################################################


* checking for file ‘VariantAnnotation/DESCRIPTION’ ... OK
* preparing ‘VariantAnnotation’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘VariantAnnotation.Rmd’ using rmarkdown
[W::bcf_hdr_check_sanity] GL should be declared as Number=G
--- finished re-building ‘VariantAnnotation.Rmd’

--- re-building ‘ensemblVEP.Rmd’ using rmarkdown

Quitting from lines 54-58 [lksnv] (ensemblVEP.Rmd)
Error: processing vignette 'ensemblVEP.Rmd' failed with diagnostics:
Internal Server Error (HTTP 500).
--- failed re-building ‘ensemblVEP.Rmd’

--- re-building ‘filterVcf.Rmd’ using rmarkdown
--- finished re-building ‘filterVcf.Rmd’

SUMMARY: processing the following file failed:
  ‘ensemblVEP.Rmd’

Error: Vignette re-building failed.
Execution halted