############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data UCell ### ############################################################################## ############################################################################## * checking for file ‘UCell/DESCRIPTION’ ... OK * preparing ‘UCell’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘UCell_Seurat.Rmd’ using rmarkdown Performing log-normalization 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Calculating gene variances 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Calculating feature variances of standardized and clipped values 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| | | | 0% | |======================================================================| 100% Using method 'umap' 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 2024-07-17 18:45:32.734 R[80040:402193204] XType: com.apple.fonts is not accessible. 2024-07-17 18:45:32.734 R[80040:402193204] XType: XTFontStaticRegistry is enabled. --- finished re-building ‘UCell_Seurat.Rmd’ --- re-building ‘UCell_sce.Rmd’ using rmarkdown Quitting from lines 64-73 [unnamed-chunk-4] (UCell_sce.Rmd) Error: processing vignette 'UCell_sce.Rmd' failed with diagnostics: the condition has length > 1 --- failed re-building ‘UCell_sce.Rmd’ --- re-building ‘UCell_vignette_basic.Rmd’ using rmarkdown --- finished re-building ‘UCell_vignette_basic.Rmd’ SUMMARY: processing the following file failed: ‘UCell_sce.Rmd’ Error: Vignette re-building failed. Execution halted