############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r TMixClust -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data TMixClust ### ############################################################################## ############################################################################## * checking for file 'TMixClust/DESCRIPTION' ... OK * preparing 'TMixClust': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'TMixClust.Rnw' using knitr pdftex: major issue: User/administrator updates are out-of-sync. pdfcrop: major issue: User/administrator updates are out-of-sync. pdftex: major issue: User/administrator updates are out-of-sync. pdfcrop: major issue: User/administrator updates are out-of-sync. pdftex: major issue: User/administrator updates are out-of-sync. pdfcrop: major issue: User/administrator updates are out-of-sync. pdftex: major issue: User/administrator updates are out-of-sync. pdfcrop: major issue: User/administrator updates are out-of-sync. pdftex: major issue: User/administrator updates are out-of-sync. pdfcrop: major issue: User/administrator updates are out-of-sync. pdftex: major issue: User/administrator updates are out-of-sync. pdfcrop: major issue: User/administrator updates are out-of-sync. pdftex: major issue: User/administrator updates are out-of-sync. pdfcrop: major issue: User/administrator updates are out-of-sync. pdftex: major issue: User/administrator updates are out-of-sync. pdfcrop: major issue: User/administrator updates are out-of-sync. pdftex: major issue: User/administrator updates are out-of-sync. pdfcrop: major issue: User/administrator updates are out-of-sync. pdftex: major issue: User/administrator updates are out-of-sync. pdfcrop: major issue: User/administrator updates are out-of-sync. pdftex: major issue: User/administrator updates are out-of-sync. pdfcrop: major issue: User/administrator updates are out-of-sync. texify: major issue: User/administrator updates are out-of-sync. Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "", : running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "TMixClust.tex" --max-iterations=20 -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/tex/latex" -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/bibtex/bst"' had status 1 Error: processing vignette 'TMixClust.Rnw' failed with diagnostics: running 'texi2dvi' on 'TMixClust.tex' failed LaTeX errors: tes/TMixClust.tex:100: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... tes/TMixClust.tex:135: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... tes/TMixClust.tex:162: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... tes/TMixClust.tex:208: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... tes/TMixClust.tex:263: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... tes/TMixClust.tex:320: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... tes/TMixClust.tex:330: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... tes/TMixClust.tex:374: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... tes/TMixClust.tex:401: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... tes/TMixClust.tex:572: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... tes/TMixClust.tex:614: Package xcolor Error: Undefined color `fgcolor'. See the xcolor package documentation for explanation. Type H for immediate help. ... --- failed re-building 'TMixClust.Rnw' SUMMARY: processing the following file failed: 'TMixClust.Rnw' Error: Vignette re-building failed. Execution halted