############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data SpatialFeatureExperiment ### ############################################################################## ############################################################################## * checking for file ‘SpatialFeatureExperiment/DESCRIPTION’ ... OK * preparing ‘SpatialFeatureExperiment’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘SFE.Rmd’ using rmarkdown Quitting from lines 52-58 [setup] (SFE.Rmd) Error: processing vignette 'SFE.Rmd' failed with diagnostics: package or namespace load failed for 'RBioFormats': .onLoad failed in loadNamespace() for 'rJava', details: call: dyn.load(file, DLLpath = DLLpath, ...) error: unable to load shared object '/home/biocbuild/R/R-4.4.1/site-library/rJava/libs/rJava.so': libjvm.so: cannot open shared object file: No such file or directory --- failed re-building ‘SFE.Rmd’ SUMMARY: processing the following file failed: ‘SFE.Rmd’ Error: Vignette re-building failed. Execution halted