############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Risa ### ############################################################################## ############################################################################## * checking for file ‘Risa/DESCRIPTION’ ... OK * preparing ‘Risa’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Risa.Rnw’ using Sweave Loading required package: Biobase Loading required package: BiocGenerics Attaching package: ‘BiocGenerics’ The following objects are masked from ‘package:stats’: IQR, mad, sd, var, xtabs The following objects are masked from ‘package:base’: Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, saveRDS, setdiff, table, tapply, union, unique, unsplit, which.max, which.min Welcome to Bioconductor Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. Loading required package: Rcpp Loading required package: biocViews Loading required package: affy Warning in fun(libname, pkgname) : Package 'Risa' is deprecated and will be removed from Bioconductor version 3.21 Loading required package: faahKO Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘faahKO’ Error: processing vignette 'Risa.Rnw' failed with diagnostics: chunk 2 (label = Risa-readISAtab) Error in find.package("faahKO") : there is no package called ‘faahKO’ --- failed re-building ‘Risa.Rnw’ SUMMARY: processing the following file failed: ‘Risa.Rnw’ Error: Vignette re-building failed. Execution halted