############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf Rarr.buildbin-libdir && mkdir Rarr.buildbin-libdir && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL --build --library=Rarr.buildbin-libdir Rarr_1.6.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'Rarr' ... ** using staged installation ** libs using C compiler: 'gcc.exe (GCC) 13.2.0' gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rarr.c -o Rarr.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bit64_conversion.c -o bit64_conversion.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c compress.c -o compress.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c decompress.c -o decompress.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c float16_conversion.c -o float16_conversion.o gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c type_conversion.c -o type_conversion.o /usr/bin/make -C compression_tools/zstd make[1]: Entering directory '/f/biocbuild/bbs-3.20-bioc/tmpdir/RtmpWItXqs/R.INSTALL138705ed24a3e/Rarr/src/compression_tools/zstd' gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/debug.c -o common/debug.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/entropy_common.c -o common/entropy_common.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/error_private.c -o common/error_private.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/fse_decompress.c -o common/fse_decompress.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/pool.c -o common/pool.o -o common/pool.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/threading.c -o common/threading.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/xxhash.c -o common/xxhash.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c common/zstd_common.c -o common/zstd_common.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/fse_compress.c -o compress/fse_compress.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/hist.c -o compress/hist.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/huf_compress.c -o compress/huf_compress.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_compress.c -o compress/zstd_compress.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_compress_literals.c -o compress/zstd_compress_literals.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_compress_sequences.c -o compress/zstd_compress_sequences.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_compress_superblock.c -o compress/zstd_compress_superblock.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_double_fast.c -o compress/zstd_double_fast.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_fast.c -o compress/zstd_fast.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_lazy.c -o compress/zstd_lazy.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_ldm.c -o compress/zstd_ldm.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstd_opt.c -o compress/zstd_opt.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c compress/zstdmt_compress.c -o compress/zstdmt_compress.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c decompress/huf_decompress.c -o decompress/huf_decompress.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c decompress/zstd_ddict.c -o decompress/zstd_ddict.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c decompress/zstd_decompress.c -o decompress/zstd_decompress.o gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -I. -I./common -DXXH_NAMESPACE=ZSTD_ -DNDEBUG -DZSTD_DISABLE_ASM -c decompress/zstd_decompress_block.c -o decompress/zstd_decompress_block.o rm -f libzstd.a ar cq libzstd.a common/debug.o common/entropy_common.o common/error_private.o common/fse_decompress.o common/pool.o common/threading.o common/xxhash.o common/zstd_common.o compress/fse_compress.o compress/hist.o compress/huf_compress.o compress/zstd_compress.o compress/zstd_compress_literals.o compress/zstd_compress_sequences.o compress/zstd_compress_superblock.o compress/zstd_double_fast.o compress/zstd_fast.o compress/zstd_lazy.o compress/zstd_ldm.o compress/zstd_opt.o compress/zstdmt_compress.o decompress/huf_decompress.o decompress/zstd_ddict.o decompress/zstd_decompress.o decompress/zstd_decompress_block.o ranlib libzstd.a make[1]: Leaving directory '/f/biocbuild/bbs-3.20-bioc/tmpdir/RtmpWItXqs/R.INSTALL138705ed24a3e/Rarr/src/compression_tools/zstd' /usr/bin/make -C compression_tools/blosc make[1]: Entering directory '/f/biocbuild/bbs-3.20-bioc/tmpdir/RtmpWItXqs/R.INSTALL138705ed24a3e/Rarr/src/compression_tools/blosc' /usr/bin/make -C lib/snappy-1.1.1 make[2]: Entering directory '/f/biocbuild/bbs-3.20-bioc/tmpdir/RtmpWItXqs/R.INSTALL138705ed24a3e/Rarr/src/compression_tools/blosc/lib/snappy-1.1.1' g++ -std=gnu++17 -IF:/biocbuild/bbs-3.20-bioc/R/include -IF:/biocbuild/bbs-3.20-bioc/R/include/x64 -DUSING_R -c snappy.cc g++ -std=gnu++17 -IF:/biocbuild/bbs-3.20-bioc/R/include -IF:/biocbuild/bbs-3.20-bioc/R/include/x64 -DUSING_R -c snappy-c.cc g++ -std=gnu++17 -IF:/biocbuild/bbs-3.20-bioc/R/include -IF:/biocbuild/bbs-3.20-bioc/R/include/x64 -DUSING_R -c snappy-sinksource.cc g++ -std=gnu++17 -IF:/biocbuild/bbs-3.20-bioc/R/include -IF:/biocbuild/bbs-3.20-bioc/R/include/x64 -DUSING_R -c snappy-stubs-internal.cc make[2]: Leaving directory '/f/biocbuild/bbs-3.20-bioc/tmpdir/RtmpWItXqs/R.INSTALL138705ed24a3e/Rarr/src/compression_tools/blosc/lib/snappy-1.1.1' /usr/bin/make -C lib/lz4-1.9.2 make[2]: Entering directory '/f/biocbuild/bbs-3.20-bioc/tmpdir/RtmpWItXqs/R.INSTALL138705ed24a3e/Rarr/src/compression_tools/blosc/lib/lz4-1.9.2' gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DNLZ4_DEBUG -c lz4.c gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -DNLZ4_DEBUG -c lz4hc.c make[2]: Leaving directory '/f/biocbuild/bbs-3.20-bioc/tmpdir/RtmpWItXqs/R.INSTALL138705ed24a3e/Rarr/src/compression_tools/blosc/lib/lz4-1.9.2' /usr/bin/make -C lib/blosc-1.20.1 all make[2]: Entering directory '/f/biocbuild/bbs-3.20-bioc/tmpdir/RtmpWItXqs/R.INSTALL138705ed24a3e/Rarr/src/compression_tools/blosc/lib/blosc-1.20.1' gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -IF:/biocbuild/bbs-3.20-bioc/R/include -IF:/biocbuild/bbs-3.20-bioc/R/include/x64 -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -msse2 -DUSING_R -c bitshuffle-sse2.c bitshuffle-sse2.c: In function 'blosc_internal_bshuf_trans_byte_elem_sse2': bitshuffle-sse2.c:260:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 260 | } | ^ bitshuffle-sse2.c: In function 'blosc_internal_bshuf_trans_bit_elem_sse2': bitshuffle-sse2.c:308:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 308 | } | ^ bitshuffle-sse2.c: In function 'blosc_internal_bshuf_trans_byte_bitrow_sse2': bitshuffle-sse2.c:414:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 414 | } | ^ bitshuffle-sse2.c: In function 'blosc_internal_bshuf_shuffle_bit_eightelem_sse2': bitshuffle-sse2.c:451:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 451 | } | ^ bitshuffle-sse2.c: In function 'blosc_internal_bshuf_untrans_bit_elem_sse2': bitshuffle-sse2.c:467:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 467 | } | ^ gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -IF:/biocbuild/bbs-3.20-bioc/R/include -IF:/biocbuild/bbs-3.20-bioc/R/include/x64 -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -msse2 -DUSING_R -c shuffle-sse2.c shuffle-sse2.c: In function 'blosc_internal_shuffle_sse2': shuffle-sse2.c:568:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 568 | } | ^ shuffle-sse2.c: In function 'blosc_internal_unshuffle_sse2': shuffle-sse2.c:626:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 626 | } | ^ gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -IF:/biocbuild/bbs-3.20-bioc/R/include -IF:/biocbuild/bbs-3.20-bioc/R/include/x64 -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -msse2 -DUSING_R -c bitshuffle-generic.c bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_byte_elem_remainder': bitshuffle-generic.c:40:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 40 | } | ^ bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_byte_elem_scal': bitshuffle-generic.c:48:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 48 | } | ^ bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_bit_byte_remainder': bitshuffle-generic.c:85:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 85 | } | ^ bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_elem': bitshuffle-generic.c:109:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 109 | } | ^ bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_bitrow_eight': bitshuffle-generic.c:121:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 121 | } | ^ bitshuffle-generic.c: In function 'blosc_internal_bshuf_trans_bit_elem_scal': bitshuffle-generic.c:139:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 139 | } | ^ bitshuffle-generic.c: In function 'blosc_internal_bshuf_shuffle_bit_eightelem_scal': bitshuffle-generic.c:204:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 204 | } | ^ bitshuffle-generic.c: In function 'blosc_internal_bshuf_untrans_bit_elem_scal': bitshuffle-generic.c:220:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 220 | } | ^ gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -IF:/biocbuild/bbs-3.20-bioc/R/include -IF:/biocbuild/bbs-3.20-bioc/R/include/x64 -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -msse2 -DUSING_R -c shuffle-generic.c shuffle-generic.c: In function 'blosc_internal_shuffle_generic': shuffle-generic.c:17:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 17 | } | ^ shuffle-generic.c: In function 'blosc_internal_unshuffle_generic': shuffle-generic.c:25:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 25 | } | ^ gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -IF:/biocbuild/bbs-3.20-bioc/R/include -IF:/biocbuild/bbs-3.20-bioc/R/include/x64 -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -msse2 -DUSING_R -DSHUFFLE_SSE2_ENABLED -c shuffle.c In file included from shuffle.c:12: shuffle-generic.h:61:13: warning: 'unshuffle_generic_inline' defined but not used [-Wunused-function] 61 | static void unshuffle_generic_inline(const size_t type_size, | ^~~~~~~~~~~~~~~~~~~~~~~~ shuffle-generic.h:32:13: warning: 'shuffle_generic_inline' defined but not used [-Wunused-function] 32 | static void shuffle_generic_inline(const size_t type_size, | ^~~~~~~~~~~~~~~~~~~~~~ shuffle.c: In function 'blosc_internal_shuffle': shuffle.c:390:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 390 | } | ^ shuffle.c: In function 'blosc_internal_unshuffle': shuffle.c:403:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 403 | } | ^ shuffle.c: In function 'blosc_internal_bitshuffle': shuffle.c:430:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 430 | } | ^ shuffle.c: In function 'blosc_internal_bitunshuffle': shuffle.c:457:1: warning: visibility attribute not supported in this configuration; ignored [-Wattributes] 457 | } | ^ gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -IF:/biocbuild/bbs-3.20-bioc/R/include -IF:/biocbuild/bbs-3.20-bioc/R/include/x64 -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -msse2 -DUSING_R -c blosclz.c gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -IF:/biocbuild/bbs-3.20-bioc/R/include -IF:/biocbuild/bbs-3.20-bioc/R/include/x64 -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -msse2 -DUSING_R -c blosc.c blosc.c:303:12: warning: 'compname_to_clibcode' defined but not used [-Wunused-function] 303 | static int compname_to_clibcode(const char *compname) | ^~~~~~~~~~~~~~~~~~~~ blosc.c:156:16: warning: 'g_atfork_registered' defined but not used [-Wunused-variable] 156 | static int32_t g_atfork_registered = 0; | ^~~~~~~~~~~~~~~~~~~ gcc -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -IF:/biocbuild/bbs-3.20-bioc/R/include -IF:/biocbuild/bbs-3.20-bioc/R/include/x64 -I../lz4-1.9.2 -I../snappy-1.1.1 -I../../../zstd -msse2 -DUSING_R -c fastcopy.c make[2]: Leaving directory '/f/biocbuild/bbs-3.20-bioc/tmpdir/RtmpWItXqs/R.INSTALL138705ed24a3e/Rarr/src/compression_tools/blosc/lib/blosc-1.20.1' rm -f libblosc.a ar cq libblosc.a lib/blosc-1.20.1/blosc.o lib/blosc-1.20.1/shuffle-sse2.o lib/blosc-1.20.1/bitshuffle-generic.o lib/blosc-1.20.1/blosclz.o lib/blosc-1.20.1/shuffle.o lib/blosc-1.20.1/bitshuffle-sse2.o lib/blosc-1.20.1/fastcopy.o lib/blosc-1.20.1/shuffle-generic.o lib/snappy-1.1.1/snappy.o lib/snappy-1.1.1/snappy-c.o lib/snappy-1.1.1/snappy-sinksource.o lib/snappy-1.1.1/snappy-stubs-internal.o lib/lz4-1.9.2/lz4.o lib/lz4-1.9.2/lz4hc.o ranlib libblosc.a make[1]: Leaving directory '/f/biocbuild/bbs-3.20-bioc/tmpdir/RtmpWItXqs/R.INSTALL138705ed24a3e/Rarr/src/compression_tools/blosc' C:\rtools44\x86_64-w64-mingw32.static.posix\bin\nm.exe: 'compression_libs': No such file gcc -shared -s -static-libgcc -o Rarr.dll tmp.def Rarr.o bit64_conversion.o compress.o decompress.o float16_conversion.o type_conversion.o compression_tools/blosc/libblosc.a compression_tools/zstd/libzstd.a -lz -lstdc++ -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.20-bioc/meat/Rarr.buildbin-libdir/00LOCK-Rarr/00new/Rarr/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'Rarr' as Rarr_1.6.0.zip * DONE (Rarr)