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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD check --install=check:PolySTest.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings PolySTest_0.99.7.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/PolySTest.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
    gcc (GCC) 12.2.1 20220819 (openEuler 12.2.1-14)
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PolySTest/DESCRIPTION’ ... OK
* this is package ‘PolySTest’ version ‘0.99.7’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PolySTest’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
File
  LICENSE
is not mentioned in the DESCRIPTION file.
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
perm_unpaired: no visible binding for global variable ‘NumTests’
permtest_paired: no visible binding for global variable ‘NumTests’
prepare_output_data: no visible global function definition for
  ‘metadata<-’
Undefined global functions or variables:
  NumTests metadata<-
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
PolySTest_unpaired 0.453  0.048  30.106
perm_unpaired      0.025  0.008  15.017
FindFCandQlim      0.018  0.000  10.932
rp_unpaired        0.009  0.000  11.091
permtest_paired    0.003  0.005  11.422
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-general.R:50:3'): overall test of full workflow ──────────────
  sum(DRFs) (`actual`) not equal to 21 (`expected`).
  
    `actual`: 23
  `expected`: 21
  ── Failure ('test-general.R:56:3'): overall test of full workflow ──────────────
  sum(DRFs) (`actual`) not equal to 21 (`expected`).
  
    `actual`: 23
  `expected`: 21
  
  [ FAIL 2 | WARN 0 | SKIP 0 | PASS 62 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.20-bioc/meat/PolySTest.Rcheck/00check.log’
for details.