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### Running command:
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###   chmod a+r Pigengene -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data Pigengene
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* checking for file 'Pigengene/DESCRIPTION' ... OK
* preparing 'Pigengene':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'Pigengene_inference.Rnw' using knitr
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
pdftex: major issue: User/administrator updates are out-of-sync.
pdfcrop: major issue: User/administrator updates are out-of-sync.
texify: major issue: User/administrator updates are out-of-sync.
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "Pigengene_inference.tex" --max-iterations=20 -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/tex/latex" -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'Pigengene_inference.Rnw' failed with diagnostics:
running 'texi2dvi' on 'Pigengene_inference.tex' failed

LaTeX errors:
ttes/Pigengene_inference.tex:133: Package xcolor Error: Undefined color `fgcolo
r'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ttes/Pigengene_inference.tex:173: Package xcolor Error: Undefined color `fgcolo
r'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ttes/Pigengene_inference.tex:217: Package xcolor Error: Undefined color `fgcolo
r'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ttes/Pigengene_inference.tex:229: Package xcolor Error: Undefined color `fgcolo
r'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ttes/Pigengene_inference.tex:250: Package xcolor Error: Undefined color `fgcolo
r'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ttes/Pigengene_inference.tex:262: Package xcolor Error: Undefined color `fgcolo
r'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ttes/Pigengene_inference.tex:278: Package xcolor Error: Undefined color `fgcolo
r'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ttes/Pigengene_inference.tex:296: Package xcolor Error: Undefined color `fgcolo
r'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ttes/Pigengene_inference.tex:323: Package xcolor Error: Undefined color `fgcolo
r'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ttes/Pigengene_inference.tex:366: Package xcolor Error: Undefined color `fgcolo
r'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ttes/Pigengene_inference.tex:397: Package xcolor Error: Undefined color `fgcolo
r'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ttes/Pigengene_inference.tex:408: Package xcolor Error: Undefined color `fgcolo
r'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ttes/Pigengene_inference.tex:455: Package xcolor Error: Undefined color `fgcolo
r'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ttes/Pigengene_inference.tex:472: Package xcolor Error: Undefined color `fgcolo
r'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ttes/Pigengene_inference.tex:504: Package xcolor Error: Undefined color `fgcolo
r'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.

--- failed re-building 'Pigengene_inference.Rnw'

SUMMARY: processing the following file failed:
  'Pigengene_inference.Rnw'

Error: Vignette re-building failed.
Execution halted