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### Running command:
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###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL NanoMethViz
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* installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘NanoMethViz’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
using C++20
g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c convert_methy_to_dss.cpp -o convert_methy_to_dss.o
g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c count_cg.cpp -o count_cg.o
g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c genome.cpp -o genome.o
genome.cpp: In member function ‘bool Genome::check_if_motif(const string&, int, const string&, int)’:
genome.cpp:43:21: warning: variable ‘chrom_view’ set but not used [-Wunused-but-set-variable]
   43 |         string_view chrom_view = this->bases_at(chrom, motif_start, motif_end);
      |                     ^~~~~~~~~~
g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c modbam.cpp -o modbam.o
modbam.cpp: In function ‘GenomicModPos parse_bam(const string&, const string&, const string&, const string&, const string&, int)’:
modbam.cpp:331:44: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::basic_string_view<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  331 |                     while ( mod_string_end < mm_tok.size() && std::isalnum(mm_tok[mod_string_end]) ) {
      |                             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
modbam.cpp:337:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::basic_string_view<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  337 |                     if (mod_string_end == mm_tok.size() || mm_tok[mod_string_end] == '.') {
      |                         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
modbam.cpp:362:21: warning: ‘parse_mode’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  362 |                     switch (parse_mode) {
      |                     ^~~~~~
modbam.cpp:384:36: warning: ‘target_base’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  384 |             while (seq.at(seq_ind) != target_base) {
      |                    ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
g++ -std=gnu++20 -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.20-bioc/R/site-library/Rcpp/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c utils.cpp -o utils.o
g++ -std=gnu++20 -shared -L/home/biocbuild/bbs-3.20-bioc/R/lib -L/usr/local/lib -o NanoMethViz.so RcppExports.o convert_methy_to_dss.o count_cg.o genome.o modbam.o utils.o -lz -L/home/biocbuild/bbs-3.20-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.20-bioc/R/site-library/00LOCK-NanoMethViz/00new/NanoMethViz/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (NanoMethViz)