############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MungeSumstats ### ############################################################################## ############################################################################## * checking for file ‘MungeSumstats/DESCRIPTION’ ... OK * preparing ‘MungeSumstats’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘MungeSumstats.Rmd’ using rmarkdown Quitting from lines 259-269 [unnamed-chunk-2] (MungeSumstats.Rmd) Error: processing vignette 'MungeSumstats.Rmd' failed with diagnostics: Install 'SNPlocs.Hsapiens.dbSNP155.GRCh37' to use 'GRCh37' as 'ref_genome' and 155 as dbSNP version --- failed re-building ‘MungeSumstats.Rmd’ --- re-building ‘OpenGWAS.Rmd’ using rmarkdown --- finished re-building ‘OpenGWAS.Rmd’ --- re-building ‘docker.Rmd’ using rmarkdown --- finished re-building ‘docker.Rmd’ SUMMARY: processing the following file failed: ‘MungeSumstats.Rmd’ Error: Vignette re-building failed. Execution halted