##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL MatrixRider
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-4.4.1/site-library’
* installing *source* package ‘MatrixRider’ ...
** using staged installation
** libs
using C compiler: ‘gcc (conda-forge gcc 14.2.0-1) 14.2.0’
gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.4.1/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.1/site-library/XVector/include' -I'/home/biocbuild/R/R-4.4.1/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.4.1/site-library/S4Vectors/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c Biostring_stubs.c -o Biostring_stubs.o
gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.4.1/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.1/site-library/XVector/include' -I'/home/biocbuild/R/R-4.4.1/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.4.1/site-library/S4Vectors/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c CuTest.c -o CuTest.o
gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.4.1/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.1/site-library/XVector/include' -I'/home/biocbuild/R/R-4.4.1/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.4.1/site-library/S4Vectors/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c R_init_MatrixRider.c -o R_init_MatrixRider.o
gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.4.1/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.1/site-library/XVector/include' -I'/home/biocbuild/R/R-4.4.1/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.4.1/site-library/S4Vectors/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c RunCuTest.c -o RunCuTest.o
gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.4.1/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.1/site-library/XVector/include' -I'/home/biocbuild/R/R-4.4.1/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.4.1/site-library/S4Vectors/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c XVector_stubs.c -o XVector_stubs.o
gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG  -I'/home/biocbuild/R/R-4.4.1/site-library/IRanges/include' -I'/home/biocbuild/R/R-4.4.1/site-library/XVector/include' -I'/home/biocbuild/R/R-4.4.1/site-library/Biostrings/include' -I'/home/biocbuild/R/R-4.4.1/site-library/S4Vectors/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c matrix_rider.c -o matrix_rider.o
gcc -shared -L/home/biocbuild/R/R-4.4.1/lib -L/usr/local/lib -o MatrixRider.so Biostring_stubs.o CuTest.o R_init_MatrixRider.o RunCuTest.o XVector_stubs.o matrix_rider.o -L/home/biocbuild/R/R-4.4.1/lib -lR
installing to /home/biocbuild/R/R-4.4.1/site-library/00LOCK-MatrixRider/00new/MatrixRider/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MatrixRider)