############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL GlobalAncova ### ############################################################################## ############################################################################## * installing to library ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘GlobalAncova’ ... ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c GlobalAncova.c -o GlobalAncova.o GlobalAncova.c: In function ‘row_orth2d’: GlobalAncova.c:33:53: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=] 33 | { error("Warning in row_orth2d: Memory block of %d bytes unavailable", | ~^ | | | int | %ld 34 | (*sD)*(*sD)*sizeof(double)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long unsigned int GlobalAncova.c:38:53: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=] 38 | { error("Warning in row_orth2d: Memory block of %d bytes unavailable", | ~^ | | | int | %ld 39 | (*sD)*(*sD)*sizeof(double) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long unsigned int GlobalAncova.c:43:53: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=] 43 | { error("Warning in row_orth2d: Memory block of %d bytes unavailable", | ~^ | | | int | %ld 44 | (*zD)*(*sD)*sizeof(double) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long unsigned int GlobalAncova.c:48:53: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=] 48 | { error("Warning in row_orth2d: Memory block of %d bytes unavailable", | ~^ | | | int | %ld 49 | (*zD)*(*zD)*sizeof(double) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long unsigned int GlobalAncova.c: In function ‘genewiseGA’: GlobalAncova.c:88:54: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=] 88 | { error("Warning in genewiseGA: Memory block of %d bytes unavailable", | ~^ | | | int | %ld 89 | (*zxx)*(*zD_full) * sizeof(double) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long unsigned int GlobalAncova.c:100:56: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=] 100 | { error("Warning in genewiseGA: Memory block of %d bytes unavailable", | ~^ | | | int | %ld 101 | (*zxx)*(*zD_red) * sizeof(double) ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long unsigned int GlobalAncova.c: In function ‘permut_withFperm’: GlobalAncova.c:148:48: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=] 148 | { error("Warning in permut: Memory block of %d bytes unavailable", | ~^ | | | int | %ld 149 | (*zrr) * sizeof(double) ); | ~~~~~~~~~~~~~~~~~~~~~~~ | | | long unsigned int GlobalAncova.c:153:48: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=] 153 | { error("Warning in permut: Memory block of %d bytes unavailable", | ~^ | | | int | %ld 154 | (*zrr) * sizeof(double)); | ~~~~~~~~~~~~~~~~~~~~~~~ | | | long unsigned int GlobalAncova.c:158:48: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=] 158 | { error("Warning in permut: Memory block of %d bytes unavailable", | ~^ | | | int | %ld 159 | (*n_test_genes) * sizeof(double)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long unsigned int GlobalAncova.c:163:48: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=] 163 | { error("Warning in permut: Memory block of %d bytes unavailable", | ~^ | | | int | %ld 164 | (*sD_full)*(*sD_full) * sizeof(double)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long unsigned int GlobalAncova.c:170:50: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=] 170 | { error("Warning in permut: Memory block of %d bytes unavailable", | ~^ | | | int | %ld 171 | (*N_Subjects) * sizeof(int)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long unsigned int GlobalAncova.c: In function ‘permut’: GlobalAncova.c:250:48: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=] 250 | { error("Warning in permut: Memory block of %d bytes unavailable", | ~^ | | | int | %ld 251 | (*zrr) * sizeof(double) ); | ~~~~~~~~~~~~~~~~~~~~~~~ | | | long unsigned int GlobalAncova.c:255:48: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=] 255 | { error("Warning in permut: Memory block of %d bytes unavailable", | ~^ | | | int | %ld 256 | (*zrr) * sizeof(double)); | ~~~~~~~~~~~~~~~~~~~~~~~ | | | long unsigned int GlobalAncova.c:260:48: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=] 260 | { error("Warning in permut: Memory block of %d bytes unavailable", | ~^ | | | int | %ld 261 | (*n_test_genes) * sizeof(double)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long unsigned int GlobalAncova.c:265:48: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=] 265 | { error("Warning in permut: Memory block of %d bytes unavailable", | ~^ | | | int | %ld 266 | (*sD_full)*(*sD_full) * sizeof(double)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long unsigned int GlobalAncova.c:272:50: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long unsigned int’ [-Wformat=] 272 | { error("Warning in permut: Memory block of %d bytes unavailable", | ~^ | | | int | %ld 273 | (*N_Subjects) * sizeof(int)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | long unsigned int GlobalAncova.c: In function ‘permut_withFperm’: GlobalAncova.c:177:8: warning: ‘ord_perm’ may be used uninitialized [-Wmaybe-uninitialized] 177 | sample ( ord_perm , N_Subjects ) ; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ GlobalAncova.c:166:8: note: ‘ord_perm’ was declared here 166 | int *ord_perm ; | ^~~~~~~~ GlobalAncova.c: In function ‘permut’: GlobalAncova.c:280:8: warning: ‘ord_perm’ may be used uninitialized [-Wmaybe-uninitialized] 280 | sample ( ord_perm , N_Subjects ) ; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ GlobalAncova.c:268:8: note: ‘ord_perm’ was declared here 268 | int *ord_perm ; | ^~~~~~~~ gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c ludcmp.c -o ludcmp.o gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c matrix.c -o matrix.o gcc -shared -L/home/biocbuild/bbs-3.20-bioc/R/lib -L/usr/local/lib -o GlobalAncova.so GlobalAncova.o ludcmp.o matrix.o -L/home/biocbuild/bbs-3.20-bioc/R/lib -lR installing to /media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/00LOCK-GlobalAncova/00new/GlobalAncova/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GlobalAncova)