############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:GSVA.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings GSVA_1.53.8.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/GSVA.Rcheck' * using R version 4.4.1 (2024-06-14 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'GSVA/DESCRIPTION' ... OK * this is package 'GSVA' version '1.53.8' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'GSVA' can be installed ... OK * used C compiler: 'gcc.exe (GCC) 13.2.0' * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files for x64 is not available File 'F:/biocbuild/bbs-3.20-bioc/R/library/GSVA/libs/x64/GSVA.dll': Found '_exit', possibly from '_exit' (C) Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran) File 'GSVA/libs/x64/GSVA.dll': Found non-API call to R: 'match5' Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs nor [v]sprintf. The detected symbols are linked into the code but might come from libraries and not actually be called. Compiled code should not call non-API entry points in R. See 'Writing portable packages' in the 'Writing R Extensions' manual. * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'runTests.R' Running 'test_gsva_newapi.R' Comparing 'test_gsva_newapi.Rout' to 'test_gsva_newapi.Rout.save' ...16,21c16,21 < Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, < as.data.frame, basename, cbind, colnames, dirname, do.call, < duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, < lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, < pmin.int, rank, rbind, rownames, sapply, setdiff, table, tapply, < union, unique, unsplit, which.max, which.min --- > anyDuplicated, aperm, append, as.data.frame, basename, cbind, > colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, > get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, > match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, > Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, > table, tapply, union, unique, unsplit, which.max, which.min 38,45c38 < I, expand.grid, unname < < < Attaching package: 'IRanges' < < The following object is masked from 'package:grDevices': < < windows --- > expand.grid, I, unname 94c87 < gs5 0.129917233 -0.14323749 -0.172890947 0.13411529 0.09628743 0.0265475253 0.050870369 0.174122516 0.081836827 -0.011085820 0.023089550 0.056006287 -0.07140253 0.055193034 -0.091548680 -0.149492965 0.037312222 0.002985924 -0.144101863 -0.01888358 -0.065965974 -0.132468115 -0.06377434 0.028402402 -0.07610908 0.0853809151 0.0806035221 -0.015568714 -0.047153650 0.01778386 --- > gs5 0.129917233 -0.14323749 -0.172890947 0.13411529 0.09628743 0.0265475253 0.050870369 0.174122516 0.081836827 -0.011085820 0.023089550 0.056006287 -0.07140253 0.055193034 -0.091548680 -0.149492965 0.037312222 0.002985924 -0.144101863 -0.01888358 -0.065961297 -0.132468115 -0.06377434 0.028402402 -0.07610908 0.0853809151 0.0806035221 -0.015568714 -0.047153650 0.01778386 96,97c89,90 < gs7 0.028701964 0.23234847 0.119915418 -0.01970966 -0.13698294 0.0031401764 -0.218020511 -0.195273449 0.038952752 -0.232984107 0.037413398 0.092363954 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0.136198133 -0.07889863 -0.11123825 0.0387444491 -0.002037746 0.040187847 -0.121686486 -0.095484760 0.052264970 0.150236692 0.04926308 -0.109888308 0.100412242 0.146400621 -0.156050604 0.018922498 0.067657595 -0.05343596 -0.068927042 -0.080941576 0.07501949 0.007660285 0.16079137 -0.2682601362 0.1012140737 0.042776107 0.002111495 -0.05482992 136,160c129,153 < KEGG_GLYCOLYSIS_GLUCONEOGENESIS -0.14418012 -0.3133817328 -0.391171673 0.21340339 0.398980386 -0.03179434 0.17524757 0.26705934 0.196519789 0.07076882 0.0145998761 0.27413667 0.083361420 -0.10575923 -0.189608055 -0.30624818 -0.25363521 -0.371666584 0.131382543 0.122449569 0.19101441 -0.452577261 -0.23105310 0.10274129 0.13624827 -0.007124138 0.15976388 -0.102152201 -0.19832123 0.202573385 0.378578854 0.288352608 0.0016120367 -0.36268281 0.110141001 0.255205365 < KEGG_CITRATE_CYCLE_TCA_CYCLE -0.20263269 0.2546732082 0.012685194 -0.23423639 0.166963123 -0.19060735 -0.09504444 0.02350579 0.252153864 -0.29870033 0.3426900775 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KEGG_ALANINE_ASPARTATE_AND_GLUTAMATE_METABOLISM -0.13254287 -0.0623922452 -0.134319540 -0.15729012 0.026834849 -0.22343907 0.14168564 0.30713913 -0.125172326 -0.17862058 -0.1731094263 0.30055821 -0.085420317 0.09882301 0.193697084 0.31425985 -0.31600195 -0.125372528 0.295397875 0.180199556 -0.20500280 0.058617241 -0.14777995 0.05091438 0.12367397 -0.040310943 -0.08013473 0.182346297 -0.10198293 0.197362551 0.285434513 0.083269169 -0.3708006909 -0.06111266 -0.243366412 0.222746237 < KEGG_GLYCINE_SERINE_AND_THREONINE_METABOLISM 0.10719371 -0.4606961102 -0.180567057 0.09540174 0.245012608 -0.15656927 0.22420420 0.05451998 0.279637623 0.13353399 0.0588075025 -0.29202943 -0.043946876 0.01212064 0.153895823 0.41802493 -0.13778592 -0.372235469 -0.406109789 0.283133835 0.19519783 -0.020078578 -0.26407215 0.12285472 0.26704639 0.059250879 0.04897781 -0.250007490 -0.05255973 0.087369877 0.196707759 0.202125900 -0.4079062250 -0.14271079 0.201471466 0.148775715 < 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0.03053317 0.084445528 -0.09753282 -0.25255017 0.15575959 0.0462057297 0.127088199 -0.15801348 -0.39696091 -0.45105115 0.434357500 -0.03828497 0.050745235 -0.09141518 0.34481527 0.0778549056 0.1205808645 0.113071962 -0.107230492 < KEGG_TYROSINE_METABOLISM -0.01013158 -0.196595442 -0.32598629 0.237374402 -0.23250901 0.20262459 0.2232565 0.26627457 -0.23771788 0.1924628476 -0.246173912 -0.11841733 -0.42705595 0.01951022 0.004484624 0.007798831 0.38715574 0.09743186 -0.182999776 0.20096611 0.40982753 0.05350491 -0.3214152163 0.182897748 -0.31135667 -0.45610097 0.33612797 0.127951123 0.29610319 -0.171090713 0.15670333 -0.08207433 0.2424991314 -0.0314562499 0.083631130 0.152278634 < KEGG_PHENYLALANINE_METABOLISM 0.18148770 0.461371608 -0.62020227 -0.140393277 0.27692153 -0.20565575 -0.2649484 0.10789494 -0.12616056 -0.1941535369 -0.595583680 -0.09085442 -0.46311485 -0.44379258 -0.093990808 0.280938193 0.09934493 -0.08162794 0.486358071 -0.06639144 0.37934632 0.56113507 -0.1060230711 0.468069197 -0.17744056 -0.17662290 0.14870307 0.649119193 0.19443272 -0.290354517 -0.55479111 0.45091097 0.3370977631 0.1944685634 -0.125721282 -0.096339449 < KEGG_TRYPTOPHAN_METABOLISM 0.02655589 0.043109593 -0.31856690 0.098466690 0.13008831 -0.18630463 0.2146807 0.05227151 0.09135000 -0.1502355445 0.007752516 0.06575941 0.14715900 0.31087022 0.208518310 -0.129119060 0.15933118 -0.11659123 0.158404342 -0.40413725 -0.29996492 0.20866768 -0.0003029911 0.127581506 -0.15098840 -0.26429807 -0.09215367 0.330810321 -0.29378958 0.015665134 -0.06172804 0.33048668 0.0406671480 -0.0549421996 -0.009869338 -0.070819327 --- > KEGG_CYSTEINE_AND_METHIONINE_METABOLISM 0.46919646 -0.380168943 -0.01773872 0.429812246 0.17364178 -0.20436261 0.3043864 0.34337161 -0.38080508 0.0857564710 -0.259409275 -0.05096080 -0.18249829 0.51288839 0.190289996 -0.436378420 0.26664702 -0.04414401 0.003940629 -0.49894385 -0.19574616 -0.05029689 -0.1798573066 -0.187265879 -0.11896302 -0.27828650 0.06494072 0.013637116 -0.27060418 0.395741143 -0.20169400 -0.05662690 -0.2624484362 0.0223987576 -0.151832657 0.296253623 > KEGG_VALINE_LEUCINE_AND_ISOLEUCINE_DEGRADATION 0.13275992 -0.334172234 -0.25729613 0.213014739 0.16552566 -0.28549989 0.5557899 -0.12594035 -0.32547571 -0.0907632515 0.375179490 -0.05918342 0.18499723 0.52187226 0.300515960 -0.433259137 0.36300112 0.23581480 -0.253354935 -0.24446632 -0.23069885 -0.30728634 -0.1095251897 0.335974432 -0.42786720 -0.35467130 0.05607809 -0.014724657 -0.38384764 0.189365161 0.32880955 -0.10650837 -0.2283860731 -0.0006837462 -0.011463264 0.281658787 > KEGG_VALINE_LEUCINE_AND_ISOLEUCINE_BIOSYNTHESIS 0.35031536 -0.131098230 -0.53101140 0.415024947 0.45022902 0.07344530 0.2667975 -0.21350030 -0.37419888 -0.6434244295 0.073570259 -0.16930988 -0.19093678 0.44377540 0.326753030 -0.395315587 0.20165887 -0.22843625 -0.345896575 0.21733136 -0.03379007 -0.33373706 -0.5598750406 0.105668958 -0.11338129 -0.25640184 0.53293944 -0.179140993 -0.15447191 0.309858597 0.28568125 -0.55068386 -0.2164372037 -0.1388932338 0.141542931 0.095210761 > KEGG_LYSINE_DEGRADATION 0.18631105 -0.302707855 0.14202963 -0.001457447 0.05052599 0.13664666 0.3353993 0.17015808 -0.15999281 0.0003802554 0.054289069 -0.06841515 0.19332597 0.06780524 0.394846160 -0.308209809 0.06840594 -0.30368912 0.173959126 -0.20656156 -0.14215812 -0.10346628 0.1434771096 0.077612666 -0.18316752 -0.05935752 0.15458897 -0.072955358 -0.26549273 -0.117408842 0.01486245 -0.19612153 -0.3691316847 0.0986933555 0.018713137 0.172759177 > KEGG_ARGININE_AND_PROLINE_METABOLISM 0.27398245 -0.007553433 -0.20383827 0.190912564 0.26352645 -0.08892086 0.3364975 0.08336217 -0.15782044 -0.0366667890 -0.011447268 -0.19979109 0.07225283 0.30484966 0.104227507 -0.292574794 0.28948741 0.07959214 0.004233241 -0.25695797 -0.29744163 0.17250236 -0.1975298264 0.243301838 -0.25109237 -0.11660031 0.11820678 0.051556447 -0.24134955 0.339674687 0.03932339 0.11905051 -0.1702678011 -0.1936881912 -0.061558207 0.052832710 > KEGG_HISTIDINE_METABOLISM 0.32955287 -0.058544393 0.23401842 0.171291998 0.01579836 0.04289179 0.1478472 -0.19081266 0.10636274 0.0513523626 -0.227789459 -0.12657552 -0.23705948 0.17255355 0.063928642 -0.080957390 0.35225566 0.03053317 0.084445528 -0.09753282 -0.25255017 0.15575959 0.0462057297 0.127088199 -0.15801348 -0.39696091 -0.45105115 0.434357500 -0.03828497 0.050745235 -0.09141518 0.34481527 0.0778549056 0.1205808645 0.113071962 -0.107230492 > KEGG_TYROSINE_METABOLISM -0.01013158 -0.196595442 -0.32598629 0.237374402 -0.23250901 0.20262459 0.2232565 0.26627457 -0.23842877 0.1924628476 -0.246173912 -0.11841733 -0.42705595 0.01951022 0.004484624 0.007798831 0.38715574 0.09743186 -0.182999776 0.20096611 0.40982753 0.05350491 -0.3214152163 0.182897748 -0.31135667 -0.45610097 0.33612797 0.127951123 0.29610319 -0.171090713 0.15670333 -0.08207433 0.2424991314 -0.0314562499 0.083631130 0.152278634 > KEGG_PHENYLALANINE_METABOLISM 0.18148770 0.461371608 -0.62020227 -0.140393277 0.27692153 -0.20565575 -0.2649484 0.10789494 -0.12695163 -0.1941535369 -0.595583680 -0.09085442 -0.46311485 -0.44379258 -0.093990808 0.280938193 0.09934493 -0.08162794 0.486358071 -0.06639144 0.37934632 0.56113507 -0.1060230711 0.468069197 -0.17744056 -0.17662290 0.14870307 0.649119193 0.19443272 -0.290354517 -0.55479111 0.45091097 0.3370977631 0.1944685634 -0.125721282 -0.096339449 > KEGG_TRYPTOPHAN_METABOLISM 0.02655589 0.043109593 -0.31856690 0.098466690 0.13008831 -0.18630463 0.2146807 0.05227151 0.09215733 -0.1502355445 0.007752516 0.06575941 0.14715900 0.31087022 0.208518310 -0.129119060 0.15933118 -0.11659123 0.158404342 -0.40413725 -0.29996492 0.20866768 -0.0003029911 0.127581506 -0.15098840 -0.26429807 -0.09215367 0.330810321 -0.29378958 0.015665134 -0.06172804 0.33048668 0.0406671480 -0.0549421996 -0.009869338 -0.070819327 198,201c191,194 < astrocytic_up -0.3047039 -0.2946458 -0.1834234 -0.5442430 -0.2833865 -0.2787807 -0.3003246 -0.2874443 0.2607599 0.1413719 0.2147476 -0.3179555 -0.4001874 0.1769813 -0.2587797 -0.3481827 -0.2662044 -0.3458676 -0.4173098 -0.1982834 -0.1585647 -0.3486646 -0.3458134 -0.2206033 0.2825871 -0.3877245 0.2093409 -0.2012697 -0.3454387 0.1748204 -0.1456757 0.1895894 -0.2552719 -0.3953904 -0.1289518 -0.3768999 -0.4736894 -0.3632090 -0.3043043 0.2444494 -0.3232623 -0.4249414 -0.3425568 -0.2379712 -0.3075052 -0.3458596 -0.3087313 0.2381774 -0.2643266 -0.2796999 < astroglia_up -0.5149367 -0.5410639 -0.4707333 -0.6113338 -0.4302368 -0.3653319 -0.4790606 -0.4724515 0.2020039 -0.5165203 -0.3810060 -0.4002704 -0.3524500 -0.4778182 0.1594972 -0.2743806 -0.4667874 -0.5181850 -0.4724924 0.3496520 0.1632944 -0.5349994 -0.5062726 -0.5565705 -0.2063495 -0.4461788 -0.1670435 -0.4503239 -0.5630519 -0.4053139 0.1610061 -0.1794262 -0.4755556 -0.2127386 -0.1996581 -0.5332708 -0.4416853 -0.4309950 -0.4982076 0.2722821 -0.3527139 -0.4120229 -0.5092288 0.1535120 -0.3638487 -0.2885878 -0.3057599 -0.2267599 -0.3789149 -0.4198976 < neuronal_up 0.5535220 0.2417661 -0.2418864 -0.1263846 0.5321716 -0.1907274 -0.3594197 0.3119459 0.4301605 -0.1251504 0.6345204 -0.4761121 -0.4776916 -0.3690997 0.2469333 -0.3801969 0.4236503 -0.4473574 -0.1167313 0.2615766 0.4413320 0.2259522 0.4606092 -0.1200735 -0.2601212 -0.2212747 0.5831173 -0.3448931 -0.3518144 0.1186834 0.1917189 -0.3075544 0.3498619 0.4974096 0.6397856 -0.2786527 0.2573272 0.4607265 0.3687379 0.1847243 0.5245857 -0.3509062 0.3514559 0.5454567 0.1606879 -0.2952730 -0.5303009 0.6995499 0.1476769 -0.1844029 < oligodendrocytic_up 0.3317871 0.2492076 0.3353456 0.1965474 0.4766460 0.3697155 0.1739368 0.2837752 0.3966107 -0.2498964 0.4111823 0.3146431 0.6296906 0.3363832 -0.1374640 0.4114549 -0.3041627 0.2648019 0.4140217 0.2318717 0.3873896 0.2033187 0.4537826 0.2660545 0.5308348 0.4465056 0.5708024 0.3329788 0.4571329 0.2958884 0.3318888 0.4969192 0.3523433 0.5364844 0.4087676 0.5468377 -0.1492471 0.4106242 0.5855721 -0.1818777 0.4798540 -0.1855969 -0.1874113 0.4959721 0.5271840 0.2207294 0.2340629 0.2860700 0.1996039 0.1418943 --- > astrocytic_up -0.3047539 -0.2946860 -0.1834593 -0.5442776 -0.2834175 -0.2788147 -0.3003514 -0.2874994 0.2607199 0.1413387 0.2146940 -0.3180027 -0.4002297 0.1769516 -0.2588480 -0.3482341 -0.2662723 -0.3459269 -0.4173384 -0.1983332 -0.1586231 -0.3486947 -0.3458663 -0.2206452 0.2825297 -0.3877544 0.2093004 -0.2012996 -0.3454799 0.1747717 -0.1457140 0.1895460 -0.2553038 -0.3954264 -0.1289837 -0.3769329 -0.4737155 -0.3632470 -0.3043683 0.2444025 -0.3233087 -0.4249789 -0.3426041 -0.2380239 -0.3075525 -0.3459151 -0.3087816 0.2381330 -0.2643738 -0.2797349 > astroglia_up -0.5149583 -0.5410770 -0.4707559 -0.6113382 -0.4302575 -0.3653708 -0.4790737 -0.4724831 0.2019720 -0.5165498 -0.3810421 -0.4003590 -0.3525063 -0.4778482 0.1594521 -0.2744265 -0.4668132 -0.5181954 -0.4725050 0.3496106 0.1632234 -0.5350220 -0.5062797 -0.5565810 -0.2063866 -0.4462150 -0.1671050 -0.4503466 -0.5630672 -0.4053433 0.1609667 -0.1794776 -0.4755774 -0.2128034 -0.1997192 -0.5332830 -0.4417129 -0.4310179 -0.4982304 0.2722387 -0.3527572 -0.4120461 -0.5092322 0.1534758 -0.3638957 -0.2886322 -0.3058095 -0.2268245 -0.3789481 -0.4199315 > neuronal_up 0.5535049 0.2417091 -0.2419423 -0.1264513 0.5321516 -0.1907802 -0.3594715 0.3119123 0.4301345 -0.1251531 0.6345184 -0.4761376 -0.4777196 -0.3691534 0.2468458 -0.3802419 0.4236358 -0.4473820 -0.1168248 0.2615203 0.4412960 0.2258959 0.4605784 -0.1201504 -0.2601714 -0.2213066 0.5831010 -0.3449359 -0.3518502 0.1186366 0.1916525 -0.3076000 0.3498210 0.4973920 0.6397865 -0.2787217 0.2572456 0.4607110 0.3686673 0.1846618 0.5245801 -0.3509494 0.3513964 0.5454430 0.1606448 -0.2953076 -0.5303268 0.6995543 0.1475983 -0.1844540 > oligodendrocytic_up 0.3317492 0.2491713 0.3353197 0.1965032 0.4766178 0.3696743 0.1739008 0.2837137 0.3965796 -0.2499617 0.4111354 0.3145638 0.6296969 0.3363415 -0.1374640 0.4114245 -0.3041959 0.2647537 0.4139883 0.2318300 0.3873472 0.2032636 0.4537419 0.2660245 0.5308132 0.4464649 0.5707848 0.3329401 0.4571077 0.2958584 0.3318632 0.4968947 0.3523085 0.5364637 0.4087340 0.5468353 -0.1492890 0.4105960 0.5855587 -0.1819342 0.4798445 -0.1856330 -0.1874635 0.4959465 0.5271533 0.2206708 0.2340045 0.2860177 0.1995836 0.1418165 203,206c196,199 < astrocytic_up -0.4388417 -0.2983802 -0.2418007 0.2967589 0.2963682 0.5498014 0.2387953 0.3145443 0.3333958 0.2298493 0.2686898 0.2358573 0.3224161 0.2434984 0.4130276 0.3558462 0.2587554 0.2958341 -0.1292965 0.4003131 0.2432207 0.2065197 -0.2054021 0.2098733 0.2379144 0.1979490 0.2823652 0.1956049 0.3445689 0.2594328 0.2530217 0.4826322 0.1815722 0.4319249 0.2886436 0.3123811 -0.3779524 0.1940016 0.1641898 0.1498050 0.2281576 0.1199247 0.3738407 0.2232822 0.2132074 0.2636067 0.2296154 0.2026299 0.3654617 0.3070807 < astroglia_up -0.5577850 -0.3009271 -0.4952468 0.3562429 -0.1948148 0.2507138 -0.1956110 0.2981474 0.1473685 0.1867380 -0.4623089 -0.1713485 -0.4221094 -0.1817762 -0.2457162 0.2500923 -0.2661095 -0.1506238 -0.4899034 -0.3467387 0.2013976 -0.1560526 -0.2156988 -0.2982488 -0.3172241 -0.2280758 0.2970809 -0.2815254 0.1634802 -0.1746267 -0.3294382 -0.2706595 -0.3002099 0.3840047 0.2306176 -0.1604633 -0.2293991 0.4619965 -0.1942601 -0.2981605 -0.2122542 0.3635290 0.2863955 0.3385597 0.1948817 0.1395946 -0.2247337 -0.2161875 -0.2067204 -0.3012896 < neuronal_up 0.2112191 0.1714387 0.4657779 0.5497952 -0.3945780 0.4963435 0.3353299 0.7175109 0.4972932 0.3710565 0.7631159 0.5344880 0.7969756 0.2857007 0.3129473 0.6442118 -0.2297041 0.4689008 0.7186214 0.1865115 0.1513096 0.4905395 0.5779240 -0.1746564 0.7386970 0.5897118 0.2984251 0.4279414 0.2146412 0.1761942 -0.5754174 0.4795757 -0.6007039 0.6585275 0.2712948 -0.5609072 -0.5409617 -0.5582162 -0.1397206 -0.1698620 0.1370293 -0.2852094 -0.2073858 -0.3609367 -0.4746261 0.2724265 -0.1920776 -0.6249410 -0.1988987 0.4172982 < oligodendrocytic_up 0.3666716 0.3009021 0.3835231 -0.2196944 -0.4632336 0.1756122 0.2283742 0.3856140 -0.1581189 0.2213285 0.2712154 -0.1950256 0.2558091 0.2960864 -0.1572841 0.3797424 -0.3338445 -0.2830490 -0.2226419 -0.1671567 0.4939420 0.1724236 -0.2515962 -0.1981065 0.3179450 -0.3936994 -0.2466158 -0.4637868 -0.4636317 -0.2713823 -0.3700800 0.2071796 -0.3778768 -0.3386398 0.2198052 0.2602110 -0.3611506 0.1908714 -0.4230817 -0.3429797 -0.3511498 -0.2819423 -0.3780330 -0.3704196 -0.3215941 -0.3171021 -0.2141531 -0.2771260 -0.1908354 -0.1300630 --- > astrocytic_up -0.4388712 -0.2984390 -0.2418500 0.2967027 0.2963262 0.5497730 0.2387450 0.3144786 0.3333460 0.2297994 0.2686543 0.2357884 0.3223822 0.2434233 0.4129700 0.3558037 0.2586949 0.2957692 -0.1293295 0.4002767 0.2431737 0.2064763 -0.2054680 0.2098025 0.2378884 0.1979041 0.2823311 0.1955658 0.3445508 0.2594091 0.2529872 0.4826020 0.1815513 0.4318795 0.2885936 0.3123410 -0.3779783 0.1939708 0.1641413 0.1497425 0.2281183 0.1198567 0.3737903 0.2232357 0.2131509 0.2635626 0.2295927 0.2025863 0.3654367 0.3070467 > astroglia_up -0.5577897 -0.3009622 -0.4952939 0.3562099 -0.1948617 0.2506709 -0.1956322 0.2980680 0.1473354 0.1866536 -0.4623550 -0.1714237 -0.4221490 -0.1818365 -0.2457673 0.2500337 -0.2661463 -0.1506672 -0.4899183 -0.3467717 0.2013752 -0.1561121 -0.2157769 -0.2982904 -0.3172812 -0.2281312 0.2970433 -0.2815591 0.1634429 -0.1746780 -0.3294734 -0.2707020 -0.3002505 0.3839744 0.2305549 -0.1605050 -0.2294543 0.4619706 -0.1943197 -0.2982120 -0.2123044 0.3634887 0.2863492 0.3384878 0.1948430 0.1395315 -0.2248029 -0.2162429 -0.2067516 -0.3013420 > neuronal_up 0.2111547 0.1714030 0.4657383 0.5497687 -0.3946098 0.4963120 0.3352992 0.7175166 0.4972767 0.3710156 0.7631191 0.5344811 0.7969773 0.2856497 0.3129090 0.6442165 -0.2297751 0.4688783 0.7186127 0.1864052 0.1512623 0.4905083 0.5779253 -0.1747120 0.7386962 0.5896950 0.2983598 0.4279023 0.2145936 0.1761452 -0.5754318 0.4795529 -0.6007193 0.6585229 0.2712467 -0.5609244 -0.5409766 -0.5582310 -0.1397818 -0.1699394 0.1369626 -0.2852583 -0.2074379 -0.3609699 -0.4746596 0.2723624 -0.1921239 -0.6249382 -0.1989687 0.4172576 > oligodendrocytic_up 0.3666431 0.3008428 0.3834914 -0.2197493 -0.4632601 0.1755629 0.2283133 0.3855686 -0.1581432 0.2212679 0.2711446 -0.1950745 0.2557408 0.2960432 -0.1573391 0.3797065 -0.3338795 -0.2831008 -0.2227159 -0.1671839 0.4939055 0.1723784 -0.2516605 -0.1981382 0.3178961 -0.3937384 -0.2466558 -0.4638286 -0.4636637 -0.2714250 -0.3701235 0.2071280 -0.3779293 -0.3386804 0.2197589 0.2601284 -0.3611962 0.1908298 -0.4231171 -0.3430255 -0.3512123 -0.2820085 -0.3780724 -0.3704518 -0.3216412 -0.3171512 -0.2142009 -0.2771720 -0.1908734 -0.1300848 208,211c201,204 < astrocytic_up 0.4009548 0.3415779 0.2219529 0.2208928 0.2604413 -0.1764385 0.2940567 0.2124973 0.4062039 0.4328265 0.2173245 0.3552220 0.2220115 0.4042555 0.3642870 0.3044991 0.3551461 0.4812534 -0.2946960 0.2717473 -0.2071679 -0.2471568 -0.2841851 0.3991677 -0.2765511 -0.1677130 -0.2640787 0.1595545 0.1985285 -0.2226380 0.1714745 -0.2188354 -0.2579139 0.1518527 0.1637658 0.3757060 0.2551228 0.1295914 -0.2699717 0.2063807 0.1624585 -0.3704452 -0.2728748 0.1963003 -0.1589775 0.3120320 0.2627425 0.2889230 0.2003386 -0.1400296 < astroglia_up -0.2684368 -0.2478401 0.4043399 0.2335841 -0.4561442 -0.2852060 0.2752597 0.3726728 0.3118608 -0.2393903 0.1821274 -0.2987813 0.1652628 0.1842096 0.2582084 0.2056833 -0.2597339 0.3691362 0.4820498 0.2888115 0.5403528 0.4579917 0.5444459 0.5332027 0.3394774 0.2195197 0.5238248 0.4465801 0.4552440 0.3172300 0.5092803 0.4264623 0.3355844 0.4395993 0.3572528 0.5354258 0.5529410 0.3636452 0.4608304 0.3642433 0.4292107 0.4497145 0.4566658 0.3511311 0.4412413 0.3601593 0.3277299 0.5529101 0.4514671 0.2933202 < neuronal_up 0.4714248 -0.5453761 -0.2183674 -0.6205769 0.3766215 -0.4809764 -0.3897892 -0.3375831 0.4026576 0.2959337 0.1515593 -0.5448352 0.4816896 -0.5155931 -0.5857110 -0.3912085 -0.4809918 -0.4431572 -0.3401257 -0.2069419 -0.1754949 -0.5429354 -0.3472852 0.4293742 -0.1852016 -0.2807559 0.2095992 0.1693385 -0.5952974 -0.4569353 0.4986757 0.6780396 -0.4360809 -0.2657542 -0.4148625 -0.2019256 -0.1825257 0.4706055 -0.3659975 -0.3950323 -0.2875278 -0.3686947 -0.4338735 -0.4137120 -0.4061465 -0.3665321 -0.2885747 -0.4493834 -0.4614429 0.3013078 < oligodendrocytic_up -0.2169513 -0.3505076 -0.4033401 -0.4180053 -0.4281763 -0.4920849 -0.3129191 -0.2567851 -0.4508361 -0.3521148 -0.1931620 -0.2401310 -0.4704955 -0.4756246 -0.3939823 -0.4508420 -0.4673175 0.6267925 -0.3869080 -0.1753184 0.1398318 -0.3356317 0.2175536 -0.1908830 -0.4169869 -0.3449233 -0.3789090 -0.3723514 -0.2488840 -0.2955228 0.2563771 0.5062585 -0.3721952 -0.2543949 -0.4120235 0.1481995 0.2266666 0.2624697 0.6390256 0.1041328 -0.3245772 -0.2504196 0.1695867 0.3363340 0.2602870 -0.4511829 -0.2274798 -0.4490531 0.2728209 0.1801896 --- > astrocytic_up 0.4009205 0.3415409 0.2219087 0.2208367 0.2603907 -0.1765010 0.2940235 0.2124375 0.4061779 0.4328053 0.2173015 0.3551808 0.2219615 0.4042258 0.3642527 0.3044645 0.3551091 0.4812290 -0.2947330 0.2717050 -0.2072296 -0.2471975 -0.2842497 0.3991259 -0.2766075 -0.1677575 -0.2641184 -0.1595722 0.1984901 -0.2226697 0.1713801 -0.2188904 -0.2579632 0.1518073 0.1637208 0.3756718 0.2550845 0.1295303 -0.2700193 0.2063444 0.1624008 -0.3704812 -0.2729261 0.1962416 -0.1590410 0.3119768 0.2627011 0.2888753 0.2002931 -0.1400612 > astroglia_up -0.2684818 -0.2478927 0.4042948 0.2335354 -0.4561683 -0.2852517 0.2751976 0.3726306 0.3118150 -0.2394383 0.1820660 -0.2988110 0.1652119 0.1841336 0.2581383 0.2056429 -0.2597831 0.3690882 0.4820315 0.2887467 0.5403445 0.4579650 0.5444281 0.5331769 0.3394440 0.2194871 0.5238034 0.4465451 0.4552118 0.3171873 0.5092584 0.4264341 0.3355302 0.4395682 0.3572217 0.5354133 0.5529363 0.3635790 0.4608111 0.3641927 0.4291813 0.4496740 0.4566347 0.3510896 0.4412179 0.3601076 0.3276640 0.5528990 0.4514321 0.2932687 > neuronal_up 0.4714021 -0.5453959 -0.2184275 -0.6205832 0.3765956 -0.4810052 -0.3898214 -0.3376351 0.4026263 0.2958724 0.1514880 -0.5448607 0.4816556 -0.5156220 -0.5857302 -0.3912544 -0.4810045 -0.4432014 -0.3401462 -0.2069768 -0.1755817 -0.5429475 -0.3473447 0.4293285 -0.1852551 -0.2807897 0.2095081 0.1692813 -0.5953110 -0.4569613 0.4986510 0.6780347 -0.4361162 -0.2657947 -0.4149003 -0.2019748 -0.1825776 0.4705841 -0.3660470 -0.3950770 -0.2875748 -0.3687514 -0.4339034 -0.4137328 -0.4061838 -0.3665761 -0.2886278 -0.4494102 -0.4614783 0.3012511 > oligodendrocytic_up -0.2170210 -0.3505377 -0.4033821 -0.4180423 -0.4282208 -0.4921075 -0.3129745 -0.2568446 -0.4508574 -0.3521717 -0.1932037 -0.2401757 -0.4705363 -0.4756500 -0.3939968 -0.4508653 -0.4673510 0.6267838 -0.3869379 -0.1753464 0.1398180 -0.3356724 0.2174792 -0.1909474 -0.4170448 -0.3449788 -0.3789635 -0.3723979 -0.2489271 -0.2955629 0.2563263 0.5062260 -0.3722382 -0.2544347 -0.4120718 0.1481816 0.2266027 0.2624142 0.6390087 0.1041047 -0.3246204 -0.2504649 0.1695500 0.3362893 0.2602318 -0.4512150 -0.2275365 -0.4490874 0.2728064 0.1801245 213,216c206,209 < astrocytic_up -0.3141367 0.2700392 0.2219991 0.2091549 0.2346335 -0.2194618 -0.3452626 -0.4238189 0.3550352 0.2340856 -0.2592843 0.1100061 -0.2273170 0.2019823 -0.2041358 -0.1507703 -0.2519176 0.1867863 -0.1964741 0.2585868 -0.3989980 -0.3061043 0.1651818 < astroglia_up 0.3922626 0.2846893 0.4656540 0.5682308 0.4886306 0.3895773 0.3731105 0.2343278 0.4821221 0.3944070 0.4396332 0.5514819 0.4772855 0.5054349 0.5478737 0.3711359 0.3051248 0.2872706 0.2808498 0.5497483 0.4052107 0.4516873 0.4086034 < neuronal_up -0.4367490 -0.3295422 -0.2846479 -0.4516747 -0.3884920 -0.3607869 -0.3779198 -0.3484209 -0.2868311 -0.5719781 -0.2625036 0.2935640 -0.3334580 0.6340406 -0.4788642 0.5079912 0.1255568 0.2450553 -0.5029055 -0.3891625 -0.3632196 -0.4658708 -0.2670035 < oligodendrocytic_up -0.1680169 0.2982153 -0.4332302 -0.2096624 -0.4410743 -0.4515348 -0.1344560 -0.2894097 -0.3966456 -0.3680547 -0.2038252 -0.1536368 0.2337270 -0.2931971 -0.2494580 0.2092354 -0.3178677 -0.3245107 -0.2702371 -0.4534116 -0.4265037 -0.4191659 0.1600741 --- > astrocytic_up -0.3141722 0.2699874 0.2219473 0.2091188 0.2345999 -0.2194917 -0.3453076 -0.4238358 0.3549822 0.2340566 -0.2593196 0.1099604 -0.2273672 0.2019316 -0.2041700 -0.1508235 -0.2519564 0.1867464 -0.1965190 0.2585439 -0.3990271 -0.3061357 0.1651281 > astroglia_up 0.3922137 0.2846455 0.4656351 0.5682138 0.4886159 0.3895400 0.3730679 0.2343013 0.4820948 0.3943550 0.4396104 0.5514612 0.4772503 0.5054087 0.5478562 0.3711037 0.3050986 0.2872253 0.2808018 0.5497252 0.4051805 0.4516472 0.4085658 > neuronal_up -0.4367833 -0.3295978 -0.2846818 -0.4517050 -0.3885191 -0.3608320 -0.3779686 -0.3484378 -0.2868552 -0.5719856 -0.2625708 0.2935293 -0.3335214 0.6340333 -0.4788773 0.5079833 0.1255322 0.2449831 -0.5029271 -0.3891953 -0.3632664 -0.4659142 -0.2670667 > oligodendrocytic_up -0.1680797 0.2981662 -0.4332569 -0.2097164 -0.4411032 -0.4515751 -0.1344606 -0.2894701 -0.3966829 -0.3681011 -0.2038674 -0.1537039 0.2336640 -0.2932406 -0.2495044 0.2091980 -0.3179201 -0.3245650 -0.2703005 -0.4534530 -0.4265475 -0.4192150 0.1600080 226,250c219,243 < NAKAMURA_CANCER_MICROENVIRONMENT_UP -0.284185921 0.09894281 -0.09166085 0.15556858 0.018687701 0.21589856 -0.159760678 -0.39128861 -0.26727234 -0.44679630 0.32574433 -0.23951518 0.051476640 -0.278506974 0.04011283 0.347632324 -0.24804097 -0.38938143 -0.15524618 0.19043913 0.02370623 0.068903997 -0.29422954 0.36158458 0.322237127 -0.075044727 0.18750433 0.22546588 -0.150244738 -0.132861970 0.245771407 0.253424577 0.149179429 0.256834003 0.54585089 -0.13771429 -0.381283518 < WEST_ADRENOCORTICAL_TUMOR_MARKERS_UP 0.074234671 0.28539841 0.54867983 -0.21455850 -0.196029929 -0.25981972 0.473892865 0.08132092 -0.02781303 0.54405412 0.36656361 0.32206336 -0.020333305 -0.304173959 0.16484183 0.025761275 0.04010094 0.12058207 -0.28234199 -0.32765526 0.33755016 0.062136062 -0.17438543 -0.27714732 -0.175368929 -0.068632830 -0.16029136 -0.54312340 -0.457243901 0.063838909 0.284048174 0.451910696 0.065458637 -0.216675403 -0.09964422 -0.46293573 -0.471055266 < WINTER_HYPOXIA_UP -0.122226539 0.19658831 0.19027777 -0.19780240 -0.295049369 -0.24808384 -0.216814893 -0.14968164 -0.14439647 0.16117004 -0.26307577 0.24300974 0.212753169 0.219567220 -0.26389007 0.067029667 -0.06856209 -0.08909042 -0.05226506 -0.30733660 0.22533379 0.193092854 0.04216994 -0.27030754 0.146503383 0.248352494 -0.08507045 0.02799035 -0.019718990 0.163757054 0.226059303 0.147465095 0.144632935 -0.177594333 -0.03490205 -0.02579216 -0.201473546 < PYEON_HPV_POSITIVE_TUMORS_UP 0.373338180 -0.08195895 0.49691537 -0.35523689 0.073820829 0.08656391 0.257900378 0.52264452 0.40765416 0.46023184 0.08554722 0.57035112 -0.453503869 0.127033813 0.41338035 -0.144148442 0.34650611 0.42161444 0.05076537 -0.50755967 0.06858839 -0.121944899 0.14630225 -0.46393255 -0.297018214 -0.007595085 -0.17430019 -0.34867040 0.238611621 -0.485707594 -0.393180984 0.283583934 -0.117141935 -0.264746769 -0.50063635 -0.42226439 0.030286161 < NAKAMURA_TUMOR_ZONE_PERIPHERAL_VS_CENTRAL_UP 0.034852372 0.17810998 0.33466738 -0.18042425 -0.301630159 -0.25696203 0.069464046 -0.13728252 0.03290473 0.15660310 0.00825721 0.17876533 -0.035728864 0.263860776 0.18841511 0.054449457 -0.05893731 -0.03627519 -0.02106037 -0.30409693 0.26346145 -0.033555920 -0.09904109 -0.31073293 0.196052944 0.041943377 -0.27670124 0.05374531 0.102078549 0.089770817 0.126164281 0.073107504 0.159604038 0.149955565 -0.17339221 -0.12806055 -0.183128694 < PICCALUGA_ANGIOIMMUNOBLASTIC_LYMPHOMA_UP -0.297408395 0.12039801 -0.26428063 0.17004586 -0.039805152 0.09850287 -0.057298350 -0.35386190 -0.16713553 -0.07891928 0.20010794 -0.20933571 0.144994190 -0.026805809 0.09893539 -0.004404619 -0.15285474 -0.30327609 -0.06851817 0.09694832 -0.24544948 0.118721563 -0.34259752 0.15768732 0.172784905 -0.184720574 0.19647006 0.20367723 -0.143437960 0.203891502 0.296136594 0.184358331 0.272106482 0.260806865 0.29031258 0.18633750 -0.058289122 < LU_TUMOR_VASCULATURE_UP -0.303485092 0.05954910 -0.08947968 0.17393748 0.055216604 -0.21711694 -0.068800882 -0.36596763 -0.10701941 -0.26356696 0.36041066 -0.07864957 -0.121613155 0.177822010 -0.01104916 0.229093881 -0.18613941 -0.27316309 0.12995187 0.27171808 -0.30894560 0.172438331 -0.30343314 0.37190436 0.180795286 -0.104016386 -0.07390340 0.21484484 -0.372653361 0.272058238 0.146426458 0.292726824 0.073215278 0.235999417 0.12233488 0.30677400 -0.166297976 < KORKOLA_EMBRYONAL_CARCINOMA_UP -0.237891606 0.22324873 0.36244453 -0.10961418 -0.136474592 -0.46990350 -0.273764475 -0.16989735 -0.22372057 0.11264686 -0.23233765 0.28697934 0.017986838 0.142356962 -0.07127081 0.189358376 0.18951708 0.36031203 -0.18122486 -0.25323494 0.42996355 0.240702262 0.14655134 -0.29879857 -0.105909705 -0.186176950 -0.23520759 0.11808592 0.123806950 -0.096186587 0.082449346 0.068290275 0.204362056 -0.305045679 -0.18242290 0.07924085 0.050412994 < KORKOLA_TERATOMA_UP 0.069466630 0.31282751 0.26793152 0.09145777 0.364378105 -0.01610294 -0.429410344 -0.34268743 -0.49321544 -0.29390567 -0.29455643 -0.43171623 -0.275085564 -0.198360712 0.34983219 0.320807082 0.13961117 -0.13440310 0.10165153 0.12248119 0.32044205 0.106653855 0.01837852 0.25031318 -0.311747483 0.053773795 0.03604947 0.33071217 0.066562201 0.280163027 0.039476681 -0.126383734 0.241910733 -0.323470237 -0.03914776 0.30954031 0.103077314 < KORKOLA_YOLK_SAC_TUMOR_UP 0.165072940 0.38624888 0.50530097 -0.37418563 0.006252226 -0.41666427 -0.301013273 -0.13354266 -0.14397323 0.31804861 -0.08054856 0.23290348 0.035345111 0.007931487 -0.09467101 -0.158566311 0.29400647 0.34421179 -0.14156018 -0.16187218 0.22342054 0.257582308 -0.07203685 -0.28296980 -0.390797184 -0.299345198 -0.33442798 -0.05640545 -0.267890012 -0.360997781 0.046532067 -0.038161214 0.260330724 -0.285968885 -0.29560478 0.25567578 -0.058961842 < KORKOLA_CHORIOCARCINOMA_UP -0.010233903 0.32695285 0.23409239 -0.44995947 0.110491619 -0.77486388 -0.590305245 -0.30294240 -0.37350003 0.22506301 -0.12212086 0.36713585 0.321071992 -0.025352644 0.18055781 0.006019335 0.33689753 0.01559227 -0.39322807 -0.49057169 0.60777944 0.563917133 0.23716208 -0.44914903 -0.257199360 0.181773354 -0.26429369 0.34875870 -0.418331961 -0.402954949 0.279270709 -0.219024970 -0.073131401 -0.376275136 -0.01449304 0.08204518 0.009841082 < KORKOLA_SEMINOMA_UP -0.298212257 0.01080115 0.24405821 -0.15938874 -0.027952932 -0.28780633 -0.247319424 -0.33519149 0.06014085 0.22162065 0.05843089 0.28316538 -0.005748430 0.060208089 0.07375198 -0.081445539 0.16610491 0.42430320 -0.01533883 0.08230093 0.24992576 0.077656272 -0.06562014 -0.16684190 -0.284188016 -0.287282092 -0.16462701 -0.05811647 -0.062401658 -0.099243073 0.073201955 0.067154795 0.267030362 -0.298271385 0.02900301 0.32555350 0.080225727 < WATANABE_RECTAL_CANCER_RADIOTHERAPY_RESPONSIVE_UP 0.097593961 -0.16794725 0.35151074 -0.23235145 -0.163198653 -0.29950843 -0.006714904 0.34062208 0.09596713 -0.11003744 -0.17106443 0.06587603 -0.266063668 0.220122655 0.33609181 -0.127919970 0.11383392 0.19988161 0.20190981 -0.30021545 0.14299295 0.063919810 0.05677215 -0.28986580 0.038509473 -0.159511586 -0.29389211 0.05765402 0.326698454 0.074522409 -0.274249102 -0.275057626 0.053399068 -0.002123506 -0.34860030 0.03644132 0.208731560 < HOLLMAN_APOPTOSIS_VIA_CD40_UP 0.105490303 -0.13988837 0.38579893 -0.24563060 -0.083118397 -0.02283095 0.141139992 0.25611563 -0.05714915 0.01800958 -0.08747454 0.14542629 -0.210152254 0.211687004 0.22093653 -0.133326040 0.06549381 0.18478682 -0.03775017 -0.20148804 0.22321211 -0.059252095 0.01426428 -0.09291203 -0.005412103 -0.025056156 -0.28678304 -0.10392565 0.206300949 0.073607794 -0.204915942 -0.221567934 -0.045463659 0.033377295 -0.24875118 0.01892772 0.157710229 < LIU_PROSTATE_CANCER_UP -0.224388256 0.06307335 -0.08241727 -0.04832687 0.189906903 -0.02124567 -0.279030644 -0.27886322 -0.09392327 -0.19792744 -0.02958043 -0.03027978 0.202657103 -0.340883536 -0.03209933 -0.116168855 -0.30287655 0.21450416 -0.04221989 -0.04528200 0.06964423 0.083555085 0.16642355 0.12185052 -0.000928352 0.140581852 0.28592176 0.02379778 -0.071982214 0.154265137 0.077278879 0.239783535 0.316168936 0.045907958 0.11350734 0.06778064 -0.142535169 < LIU_SOX4_TARGETS_UP 0.121044935 -0.14068822 0.22940559 -0.01599521 0.061591507 -0.00693642 0.014199778 0.30911203 -0.08600822 -0.02038572 0.11428792 -0.21978031 -0.226284392 -0.023607467 0.29166627 0.064022632 0.06822989 -0.07130524 0.23335358 0.06981417 -0.11573705 -0.291602661 -0.13629614 -0.03270145 0.024218801 -0.013336764 -0.10693992 -0.16558042 0.190828338 0.225752350 -0.229823064 -0.164944356 -0.179080910 0.177092706 -0.17646028 -0.18791621 0.240962021 < BERTUCCI_MEDULLARY_VS_DUCTAL_BREAST_CANCER_UP 0.062841657 -0.18362789 0.29336781 -0.18593479 0.154299300 -0.05557008 -0.083102532 0.04576576 -0.09217560 -0.19547004 0.05520919 -0.04809592 -0.052687838 0.107250567 0.17234102 0.220352187 -0.04953385 0.24873127 0.13828440 0.19314948 0.04975678 0.049538498 -0.06477196 -0.06226135 -0.098276136 -0.129915554 -0.19707557 0.02496088 -0.051271962 0.052870430 -0.073226448 -0.184972633 -0.012686096 -0.071797506 -0.27150226 0.27912570 -0.135303937 < SCHUETZ_BREAST_CANCER_DUCTAL_INVASIVE_UP -0.094846112 -0.07207493 -0.02804641 0.03696695 -0.086430959 -0.08397341 -0.068172639 -0.05763452 -0.02656047 -0.17776378 0.25831993 -0.14822566 -0.145164161 -0.039994112 0.10916471 -0.090892437 0.03681030 -0.09371656 0.11806513 0.17785724 -0.11045327 -0.058179875 -0.31826977 0.09626481 0.143730437 -0.160259482 -0.06107470 0.08258687 0.034945942 0.261683956 0.008100331 -0.089058343 0.056294586 0.251516300 0.01348282 0.28709285 0.102083930 < DAVICIONI_PAX_FOXO1_SIGNATURE_IN_ARMS_UP 0.074340051 0.02859495 -0.24003150 0.30715667 -0.010403308 -0.10045962 -0.159844495 -0.22324560 0.02883980 0.11716419 0.07777705 -0.17990167 0.106011986 -0.179976522 -0.09660455 0.026469354 -0.12555729 -0.17001513 0.19363609 0.07413777 -0.34472957 0.071120620 -0.23684660 0.25225819 0.214521242 -0.165883257 -0.03452474 -0.02439650 -0.180590309 0.011141161 0.114305528 0.052961087 -0.068405608 0.293293442 0.24643595 0.09297256 -0.030979738 < FOURNIER_ACINAR_DEVELOPMENT_EARLY_UP 0.005014724 0.08111308 0.26913235 -0.09552045 -0.450228901 -0.20835559 -0.341832089 0.08934729 -0.33423215 -0.07566234 -0.22745666 -0.31425832 -0.075046342 0.101225498 -0.22803411 0.359148102 0.25779762 -0.50524646 0.12655983 -0.08326589 0.16277302 -0.238058161 -0.17065282 0.06861909 0.125783171 -0.153453577 -0.06888951 0.35891268 0.238976848 0.449575492 -0.397721447 0.129949315 0.063354595 0.344276854 0.21919705 -0.02084416 0.446602851 < FOURNIER_ACINAR_DEVELOPMENT_LATE_UP -0.086490808 0.42662285 -0.06186335 0.19254225 -0.147417154 0.23175825 0.491914629 -0.11696009 0.01145265 -0.18617542 -0.09864352 -0.08071038 -0.040497304 -0.284554435 0.44402053 -0.167965862 -0.06796364 -0.12183172 0.37256760 0.34632681 0.01477953 0.154501865 -0.14155636 -0.17148626 0.040841265 -0.199318164 -0.03141871 -0.02556187 -0.194745034 0.111576773 0.299019277 -0.246935585 -0.304924920 0.249744542 0.16874813 -0.28320150 -0.409684665 < FRASOR_TAMOXIFEN_RESPONSE_UP 0.095102205 0.13613061 0.27963248 0.10696680 -0.201251938 0.04440738 0.039666191 0.08072985 -0.30347286 -0.13127614 -0.16382915 -0.08811162 0.130289925 -0.269491251 0.04481561 -0.129982372 -0.09261704 0.05779261 0.20931005 -0.11293941 -0.08782228 -0.154603301 -0.10942582 0.03255269 0.068908002 -0.134879788 -0.11865894 0.03929191 0.105215621 0.144775760 -0.132818191 -0.126161041 0.046198277 0.066790819 0.10784581 0.14897625 0.103889267 < KIM_RESPONSE_TO_TSA_AND_DECITABINE_UP -0.093263740 0.24451894 -0.30875436 -0.01162447 -0.077592391 0.06977365 -0.047698353 -0.25543630 -0.16734657 -0.30035234 0.13866962 -0.24677548 0.008403829 -0.097200448 -0.07991562 0.237943766 -0.08176618 -0.34607119 0.18984664 0.28121888 -0.29765020 0.006617499 -0.17838613 0.18555511 0.093835798 -0.218609231 0.17434097 0.06804717 -0.095062879 0.199580074 0.321860622 -0.008284166 -0.001916854 0.183088620 0.25305607 0.13585610 0.034581179 < SENGUPTA_NASOPHARYNGEAL_CARCINOMA_UP 0.203957767 0.12189117 0.38492132 -0.24301638 -0.090539076 -0.19966713 0.102728363 0.04976671 0.18283716 0.30439695 0.14811261 0.24724848 -0.327248458 0.129670458 0.33143810 -0.086102559 0.10335793 0.20068518 0.03773511 -0.23454620 0.13617294 -0.090765507 -0.26073243 -0.38875239 -0.054723088 -0.050551494 -0.23180871 -0.12601589 -0.001883262 -0.007475204 0.072576782 0.189048383 0.090254301 0.187411566 -0.31338258 -0.10912037 -0.247410905 < WATANABE_COLON_CANCER_MSI_VS_MSS_UP -0.156524705 -0.00167507 -0.10689295 0.36427412 -0.010218876 -0.06496857 -0.269749963 -0.27745767 0.02119152 -0.21830558 -0.19657472 -0.35120814 0.269162954 -0.142483756 -0.26808257 0.038724466 -0.07004319 -0.11588327 -0.10292213 -0.06429828 0.25284346 0.283925446 0.01040659 0.32549432 0.230151042 0.409316724 0.37175290 -0.27673142 -0.066751401 -0.078279396 0.099369827 -0.165196141 0.013360644 0.168730310 0.23632001 -0.18337713 -0.329485400 --- > NAKAMURA_CANCER_MICROENVIRONMENT_UP -0.284185921 0.09894281 -0.09166085 0.15556858 0.018687701 0.21589856 -0.159760678 -0.39128861 -0.26727234 -0.44679630 0.325744327 -0.23951518 0.051302632 -0.278506974 0.04015073 0.347632324 -0.24804097 -0.38938143 -0.15524618 0.19043913 0.02370623 0.068903997 -0.29422954 0.36158458 0.322237127 -0.075044727 0.18750433 0.22546588 -0.150244738 -0.132861970 0.245771407 0.253424577 0.149179429 0.256834003 0.54585089 -0.13771429 -0.381283518 > WEST_ADRENOCORTICAL_TUMOR_MARKERS_UP 0.074234671 0.28539841 0.54867983 -0.21455850 -0.196029929 -0.25981972 0.473892865 0.08132092 -0.02781303 0.54530761 0.366563615 0.32206336 -0.020333305 -0.304173959 0.16484183 0.025761275 0.04010094 0.12058207 -0.28234199 -0.32765526 0.33755016 0.062136062 -0.17438543 -0.27714732 -0.175368929 -0.068632830 -0.16029136 -0.54312340 -0.457243901 0.063838909 0.284048174 0.451910696 0.065458637 -0.216675403 -0.09964422 -0.46293573 -0.471055266 > WINTER_HYPOXIA_UP -0.122226539 0.19658831 0.19027777 -0.19779261 -0.295049369 -0.24808384 -0.216814893 -0.14968164 -0.14439647 0.16117004 -0.263075768 0.24300974 0.212753169 0.219567220 -0.26389007 0.067029667 -0.06856209 -0.08909042 -0.05226506 -0.30733660 0.22533379 0.193092854 0.04216994 -0.27030754 0.146503383 0.248352494 -0.08507045 0.02799035 -0.019718990 0.163757054 0.226094520 0.147465095 0.144632935 -0.177600100 -0.03490205 -0.02579216 -0.201473546 > PYEON_HPV_POSITIVE_TUMORS_UP 0.373338180 -0.08195895 0.49691537 -0.35523689 0.073820829 0.08656391 0.257900378 0.52264452 0.40765416 0.46023184 0.085547216 0.57035112 -0.453573874 0.127033813 0.41338035 -0.144148442 0.34650611 0.42161444 0.05076537 -0.50755967 0.06858839 -0.122209941 0.14630225 -0.46393255 -0.297018214 -0.007595085 -0.17430019 -0.34867040 0.238611621 -0.485707594 -0.393180984 0.283583934 -0.117141935 -0.264746769 -0.50063635 -0.42226439 0.030286161 > NAKAMURA_TUMOR_ZONE_PERIPHERAL_VS_CENTRAL_UP 0.034852372 0.17810998 0.33466738 -0.18043537 -0.301630159 -0.25696203 0.069464046 -0.13728252 0.03289923 0.15662255 0.008254385 0.17876533 -0.035728864 0.263860776 0.18841806 0.054449457 -0.05893731 -0.03627519 -0.02106037 -0.30409556 0.26346145 -0.033555920 -0.09904109 -0.31073293 0.196059298 0.041943377 -0.27670124 0.05374531 0.102078549 0.089751050 0.126164281 0.073107504 0.159604038 0.149992036 -0.17339221 -0.12806055 -0.183128694 > PICCALUGA_ANGIOIMMUNOBLASTIC_LYMPHOMA_UP -0.297408395 0.12039801 -0.26428063 0.17004586 -0.039805152 0.09850287 -0.057298350 -0.35386190 -0.16713553 -0.07892505 0.200098274 -0.20933571 0.144977450 -0.026805809 0.09893933 -0.004404619 -0.15285474 -0.30327609 -0.06851817 0.09694832 -0.24544948 0.118722964 -0.34259752 0.15768732 0.172784905 -0.184720574 0.19647116 0.20367723 -0.143437960 0.203937367 0.294431435 0.184358331 0.272106482 0.260812933 0.29031258 0.18633750 -0.058307777 > LU_TUMOR_VASCULATURE_UP -0.303485092 0.05954910 -0.08947968 0.17393748 0.055216604 -0.21711694 -0.068811743 -0.36596763 -0.10701941 -0.26356696 0.360410658 -0.07864957 -0.121613155 0.177822010 -0.01104916 0.229093881 -0.18613941 -0.27316309 0.12995187 0.27171808 -0.30894560 0.172438331 -0.30343314 0.37190436 0.180795286 -0.104016386 -0.07390340 0.21484484 -0.372653361 0.272063159 0.146426458 0.292726824 0.073215278 0.236064108 0.12233488 0.30677400 -0.166297976 > KORKOLA_EMBRYONAL_CARCINOMA_UP -0.237891606 0.22324873 0.36244453 -0.10961418 -0.136474592 -0.46990350 -0.273764475 -0.16989735 -0.22372057 0.11247316 -0.232337649 0.28697934 0.017986838 0.142356962 -0.07127081 0.189358376 0.18951708 0.36031203 -0.18122486 -0.25323494 0.42996355 0.240702262 0.14655134 -0.29879857 -0.105909705 -0.186176950 -0.23520759 0.11808592 0.123806950 -0.096186587 0.082449346 0.068290275 0.204362056 -0.305158509 -0.18242290 0.07924085 0.050412994 > KORKOLA_TERATOMA_UP 0.069466630 0.31282751 0.26793152 0.09145777 0.364378105 -0.01610294 -0.429410344 -0.34268743 -0.49321544 -0.29390567 -0.294556431 -0.43171623 -0.275085564 -0.198360712 0.34983219 0.320807082 0.13961117 -0.13440310 0.10165153 0.12248119 0.32044205 0.106653855 0.01837852 0.25031318 -0.310896163 0.053773795 0.03604947 0.33071217 0.066562201 0.280163027 0.039476681 -0.126383734 0.241910733 -0.323470237 -0.03914776 0.30954031 0.103077314 > KORKOLA_YOLK_SAC_TUMOR_UP 0.165072940 0.38624888 0.50530097 -0.37418563 0.006252226 -0.41666427 -0.301013273 -0.13354266 -0.14397323 0.31804861 -0.080548556 0.23290348 0.035345111 0.007931487 -0.09467101 -0.158566311 0.29400647 0.34421179 -0.14156018 -0.16187218 0.22342054 0.257582308 -0.07203685 -0.28296980 -0.390797184 -0.299345198 -0.33442798 -0.05640545 -0.267890012 -0.360997781 0.046532067 -0.038161214 0.260330724 -0.286721001 -0.29560478 0.25567578 -0.058961842 > KORKOLA_CHORIOCARCINOMA_UP -0.010233903 0.32695285 0.23409239 -0.44995947 0.110491619 -0.77486388 -0.590305245 -0.30294240 -0.37350003 0.22506301 -0.122120864 0.36713585 0.321071992 -0.025352644 0.18055781 0.006019335 0.33689753 0.01559227 -0.39322807 -0.49057169 0.60777944 0.563917133 0.23716208 -0.44914903 -0.257199360 0.181773354 -0.26429369 0.34875870 -0.418331961 -0.402954949 0.279270709 -0.219024970 -0.073131401 -0.377126885 -0.01449304 0.08204518 0.009841082 > KORKOLA_SEMINOMA_UP -0.298212257 0.01080115 0.24405821 -0.15938874 -0.027952932 -0.28780633 -0.247319424 -0.33519149 0.06014085 0.22168793 0.058430886 0.28316538 -0.005576346 0.060208089 0.07375198 -0.081445539 0.16610491 0.42430320 -0.01533883 0.08230093 0.24992576 0.077656272 -0.06562014 -0.16684190 -0.284188016 -0.287282092 -0.16462701 -0.05811647 -0.062401658 -0.099243073 0.073201955 0.067154795 0.267030362 -0.298357838 0.02900301 0.32555350 0.080225727 > WATANABE_RECTAL_CANCER_RADIOTHERAPY_RESPONSIVE_UP 0.097593813 -0.16794685 0.35151193 -0.23237964 -0.163197206 -0.29950843 -0.006714904 0.34062208 0.09604888 -0.11003744 -0.171064434 0.06587775 -0.266062516 0.220122655 0.33608928 -0.127916894 0.11383392 0.19988434 0.20190981 -0.30021326 0.14299295 0.063923084 0.05677644 -0.28986580 0.038510117 -0.159509213 -0.29388778 0.05765373 0.326704138 0.074522409 -0.274247777 -0.275056415 0.053402889 -0.002107284 -0.34859857 0.03644107 0.208732689 > HOLLMAN_APOPTOSIS_VIA_CD40_UP 0.105496299 -0.13988837 0.38579893 -0.24564927 -0.083118397 -0.02283095 0.141139992 0.25611563 -0.05713898 0.01803229 -0.087474542 0.14542629 -0.210191344 0.211687858 0.22093653 -0.133326040 0.06549381 0.18478682 -0.03775017 -0.20148605 0.22321211 -0.059252095 0.01426428 -0.09291203 -0.005412103 -0.025056156 -0.28678304 -0.10392565 0.206300949 0.073580108 -0.204915942 -0.221567934 -0.045463659 0.033396194 -0.24875118 0.01892772 0.157710229 > LIU_PROSTATE_CANCER_UP -0.224388256 0.06307335 -0.08241727 -0.04832687 0.189906903 -0.02124567 -0.279030644 -0.27886322 -0.09392327 -0.19792744 -0.029580432 -0.03027978 0.202657103 -0.340883536 -0.03209933 -0.116168855 -0.30287655 0.21450416 -0.04221989 -0.04528200 0.06964423 0.083598831 0.16642355 0.12185052 -0.000928352 0.140595272 0.28592176 0.02379778 -0.071982214 0.154329444 0.077278879 0.239783535 0.316168936 0.045907958 0.11350734 0.06778064 -0.142535169 > LIU_SOX4_TARGETS_UP 0.121044935 -0.14068822 0.22940559 -0.01597795 0.061591507 -0.00693642 0.014199778 0.30911203 -0.08600822 -0.02038572 0.114287917 -0.21978031 -0.226307014 -0.023607467 0.29166627 0.064022632 0.06822989 -0.07130524 0.23335358 0.06981417 -0.11573705 -0.291602661 -0.13629614 -0.03270145 0.024218801 -0.013336764 -0.10693992 -0.16558042 0.190828338 0.225771717 -0.229823064 -0.164944356 -0.179080910 0.177092706 -0.17646028 -0.18791880 0.240962021 > BERTUCCI_MEDULLARY_VS_DUCTAL_BREAST_CANCER_UP 0.062841657 -0.18362789 0.29336781 -0.18594491 0.154299300 -0.05557008 -0.083102532 0.04576576 -0.09217560 -0.19543518 0.055196463 -0.04809592 -0.052719541 0.107250567 0.17234102 0.220352187 -0.04953385 0.24873127 0.13828440 0.19314948 0.04975678 0.049538498 -0.06477196 -0.06226135 -0.098276136 -0.129915554 -0.19707557 0.02496088 -0.051271962 0.052870430 -0.073226448 -0.184972633 -0.012686096 -0.071808834 -0.27150226 0.27912570 -0.135303937 > SCHUETZ_BREAST_CANCER_DUCTAL_INVASIVE_UP -0.094846112 -0.07207493 -0.02804641 0.03696695 -0.086436392 -0.08397341 -0.068172639 -0.05763452 -0.02656466 -0.17775526 0.258308865 -0.14822566 -0.145150486 -0.039994112 0.10916677 -0.090893212 0.03680901 -0.09371656 0.11806513 0.17785724 -0.11045327 -0.058180594 -0.31826977 0.09626481 0.143735941 -0.160260444 -0.06107374 0.08258827 0.034945942 0.261716811 0.008073164 -0.089058343 0.056294586 0.251527056 0.01348282 0.28709952 0.102083930 > DAVICIONI_PAX_FOXO1_SIGNATURE_IN_ARMS_UP 0.074340051 0.02857125 -0.24003150 0.30715667 -0.010403308 -0.10045962 -0.159844495 -0.22324560 0.02880624 0.11715699 0.077777052 -0.17990167 0.106011986 -0.179976522 -0.09660455 0.026469354 -0.12555729 -0.17002077 0.19363609 0.07413777 -0.34472957 0.071120620 -0.23684660 0.25225819 0.214521242 -0.165874245 -0.03452474 -0.02439650 -0.180590309 0.011098030 0.114305528 0.052961087 -0.068405608 0.293293442 0.24643595 0.09297256 -0.030979738 > FOURNIER_ACINAR_DEVELOPMENT_EARLY_UP 0.005014724 0.08111308 0.26913235 -0.09552045 -0.450228901 -0.20835559 -0.341832089 0.08934729 -0.33423215 -0.07570491 -0.227456658 -0.31425832 -0.075046342 0.101225498 -0.22803411 0.359148102 0.25779762 -0.50524646 0.12655983 -0.08326589 0.16277302 -0.238058161 -0.17065282 0.06861909 0.125783171 -0.153453577 -0.06888951 0.35891268 0.238976848 0.449575492 -0.397721447 0.129949315 0.063354595 0.344276854 0.21919705 -0.02084416 0.446602851 > FOURNIER_ACINAR_DEVELOPMENT_LATE_UP -0.086490808 0.42662285 -0.06186335 0.19254225 -0.147417154 0.23175825 0.491914629 -0.11696009 0.01145265 -0.18617542 -0.098643515 -0.08071038 -0.040838732 -0.284554435 0.44402053 -0.167965862 -0.06796364 -0.12183172 0.37256760 0.34632681 0.01477953 0.154501865 -0.14155636 -0.17148626 0.040841265 -0.199318164 -0.03141871 -0.02556187 -0.194745034 0.111576773 0.299019277 -0.246935585 -0.304924920 0.249744542 0.16874813 -0.28320150 -0.409684665 > FRASOR_TAMOXIFEN_RESPONSE_UP 0.095102205 0.13613061 0.27963248 0.10696680 -0.201251938 0.04440738 0.039666191 0.08072985 -0.30347286 -0.13117213 -0.163829152 -0.08811162 0.130289925 -0.269491251 0.04481561 -0.129982372 -0.09261704 0.05779261 0.20931794 -0.11293941 -0.08782228 -0.154603301 -0.10942582 0.03255269 0.068908002 -0.134879788 -0.11865894 0.03929191 0.105215621 0.144775760 -0.132818191 -0.126161041 0.046198277 0.066790819 0.10784581 0.14897625 0.103889267 > KIM_RESPONSE_TO_TSA_AND_DECITABINE_UP -0.093263740 0.24451532 -0.30875436 -0.01171828 -0.077592391 0.06977365 -0.047698353 -0.25543630 -0.16734657 -0.29943342 0.138659259 -0.24677548 0.008316094 -0.097198227 -0.07991562 0.237943766 -0.08176618 -0.34607119 0.18984664 0.28121888 -0.29765020 0.006609358 -0.17838613 0.18555511 0.093828022 -0.218609231 0.17434097 0.06804717 -0.095062879 0.199580074 0.321860622 -0.008284166 -0.001916854 0.183088620 0.25305607 0.13585610 0.034581179 > SENGUPTA_NASOPHARYNGEAL_CARCINOMA_UP 0.203957767 0.12189117 0.38492132 -0.24300464 -0.090523098 -0.19966713 0.102728363 0.04976671 0.18283638 0.30437400 0.148109727 0.24724848 -0.327248458 0.129670458 0.33143975 -0.086102559 0.10335793 0.20068518 0.03773511 -0.23454620 0.13617294 -0.090673447 -0.26073243 -0.38875239 -0.054723088 -0.050551494 -0.23180710 -0.12601589 -0.001883262 -0.007476349 0.072573918 0.189048383 0.090254301 0.187420576 -0.31338258 -0.10912037 -0.247410905 > WATANABE_COLON_CANCER_MSI_VS_MSS_UP -0.156524705 -0.00167507 -0.10689295 0.36427412 -0.010218876 -0.06496857 -0.269749963 -0.27745767 0.02119152 -0.21830558 -0.196574719 -0.35120814 0.269162954 -0.142483756 -0.26808257 0.038724466 -0.07004319 -0.11588327 -0.10292213 -0.06427425 0.25284346 0.283925446 0.01040659 0.32549432 0.230151042 0.409316724 0.37175290 -0.27673142 -0.066751401 -0.078279396 0.099369827 -0.165196141 0.013360644 0.168730310 0.23632001 -0.18337713 -0.329485400 Running 'test_plage_newapi.R' Comparing 'test_plage_newapi.Rout' to 'test_plage_newapi.Rout.save' ...16,21c16,21 < Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, < as.data.frame, basename, cbind, colnames, dirname, do.call, < duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, < lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, < pmin.int, rank, rbind, rownames, sapply, setdiff, table, tapply, < union, unique, unsplit, which.max, which.min --- > anyDuplicated, aperm, append, as.data.frame, basename, cbind, > colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, > get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, > match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, > Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, > table, tapply, union, unique, unsplit, which.max, which.min 38,45c38 < I, expand.grid, unname < < < Attaching package: 'IRanges' < < The following object is masked from 'package:grDevices': < < windows --- > expand.grid, I, unname Running 'test_ssgsea_newapi.R' Comparing 'test_ssgsea_newapi.Rout' to 'test_ssgsea_newapi.Rout.save' ...16,21c16,21 < Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, < as.data.frame, basename, cbind, colnames, dirname, do.call, < duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, < lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, < pmin.int, rank, rbind, rownames, sapply, setdiff, table, tapply, < union, unique, unsplit, which.max, which.min --- > anyDuplicated, aperm, append, as.data.frame, basename, cbind, > colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, > get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, > match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, > Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, > table, tapply, union, unique, unsplit, which.max, which.min 38,45c38 < I, expand.grid, unname < < < Attaching package: 'IRanges' < < The following object is masked from 'package:grDevices': < < windows --- > expand.grid, I, unname 85a79,81 > [1] "Calculating ranks..." > [1] "Calculating absolute values from ranks..." > [1] "Normalizing..." 133a130,132 > [1] "Calculating ranks..." > [1] "Calculating absolute values from ranks..." > [1] "Normalizing..." 164a164,166 > [1] "Calculating ranks..." > [1] "Calculating absolute values from ranks..." > [1] "Normalizing..." 194a197,199 > [1] "Calculating ranks..." > [1] "Calculating absolute values from ranks..." > [1] "Normalizing..." 222a228,230 > [1] "Calculating ranks..." > [1] "Calculating absolute values from ranks..." > [1] "Normalizing..." Running 'test_zscore_newapi.R' Comparing 'test_zscore_newapi.Rout' to 'test_zscore_newapi.Rout.save' ...16,21c16,21 < Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, < as.data.frame, basename, cbind, colnames, dirname, do.call, < duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, < lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, < pmin.int, rank, rbind, rownames, sapply, setdiff, table, tapply, < union, unique, unsplit, which.max, which.min --- > anyDuplicated, aperm, append, as.data.frame, basename, cbind, > colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, > get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, > match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, > Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, > table, tapply, union, unique, unsplit, which.max, which.min 38,45c38 < I, expand.grid, unname < < < Attaching package: 'IRanges' < < The following object is masked from 'package:grDevices': < < windows --- > expand.grid, I, unname OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'F:/biocbuild/bbs-3.20-bioc/meat/GSVA.Rcheck/00check.log' for details.