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###
### Running command:
###
###   chmod a+r DEqMS -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data DEqMS
###
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* checking for file 'DEqMS/DESCRIPTION' ... OK
* preparing 'DEqMS':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'DEqMS-package-vignette.Rmd' using rmarkdown
trying URL 'https://ftp.ebi.ac.uk/pride-archive/2016/06/PXD004163/Yan_miR_Protein_table.flatprottable.txt'
Content type 'text/plain; charset=UTF-8' length 3515045 bytes (3.4 MB)
==================================================
downloaded 3.4 MB

trying URL 'https://ftp.ebi.ac.uk/pride-archive/2014/09/PXD000279/proteomebenchmark.zip'
Content type 'application/zip' length 38428469 bytes (36.6 MB)
==================================================
downloaded 36.6 MB


Quitting from lines 318-321 [log2transform2] (DEqMS-package-vignette.Rmd)
Error: processing vignette 'DEqMS-package-vignette.Rmd' failed with diagnostics:
subscript contains out-of-bounds indices
--- failed re-building 'DEqMS-package-vignette.Rmd'

SUMMARY: processing the following file failed:
  'DEqMS-package-vignette.Rmd'

Error: Vignette re-building failed.
Execution halted