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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CluMSID
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* checking for file ‘CluMSID/DESCRIPTION’ ... OK
* preparing ‘CluMSID’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CluMSID_DI-MSMS.Rmd’ using rmarkdown
2024-10-31 16:19:23.315 R[3171:272078960] XType: com.apple.fonts is not accessible.
2024-10-31 16:19:23.315 R[3171:272078960] XType: XTFontStaticRegistry is enabled.
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "CluMSID DI-MS/MS Tutorial", and the latter is "Clustering Spectra from High Resolution DI-MS/MS Data Using CluMSID". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘CluMSID_DI-MSMS.Rmd’

--- re-building ‘CluMSID_GC-EI-MS.Rmd’ using rmarkdown

Quitting from lines 127-130 [runCAMERA] (CluMSID_GC-EI-MS.Rmd)
Error: processing vignette 'CluMSID_GC-EI-MS.Rmd' failed with diagnostics:
wrong args for environment subassignment
--- failed re-building ‘CluMSID_GC-EI-MS.Rmd’

--- re-building ‘CluMSID_MTBLS.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/Rtmp5oB30J/Rfc635c8ef5a2': No such file or directory

Quitting from lines 14-20 [setup] (CluMSID_MTBLS.Rmd)
Error: processing vignette 'CluMSID_MTBLS.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘CluMSID_MTBLS.Rmd’

--- re-building ‘CluMSID_lowres-LC-MSMS.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/Rtmp5oB30J/Rfc637d4b9d8': No such file or directory

Quitting from lines 14-20 [setup] (CluMSID_lowres-LC-MSMS.Rmd)
Error: processing vignette 'CluMSID_lowres-LC-MSMS.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘CluMSID_lowres-LC-MSMS.Rmd’

--- re-building ‘CluMSID_tutorial.Rmd’ using rmarkdown
Warning in file("", "w+b") :
  cannot open file '/tmp/Rtmp5oB30J/Rfc636cf596d4': No such file or directory

Quitting from lines 14-19 [setup] (CluMSID_tutorial.Rmd)
Error: processing vignette 'CluMSID_tutorial.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘CluMSID_tutorial.Rmd’

SUMMARY: processing the following files failed:
  ‘CluMSID_GC-EI-MS.Rmd’ ‘CluMSID_MTBLS.Rmd’
  ‘CluMSID_lowres-LC-MSMS.Rmd’ ‘CluMSID_tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted