############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL BiRewire ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4.1/site-library’ * installing *source* package ‘BiRewire’ ... ** using staged installation ** libs using C compiler: ‘gcc (conda-forge gcc 14.2.0-1) 14.2.0’ gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c BiRewire.c -o BiRewire.o BiRewire.c: In function 'analysis': BiRewire.c:149:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long int'} [-Wformat=] 149 | Rprintf("DONE in %d seconds \n",-(tin-tfin)); | ~^ ~~~~~~~~~~~ | | | | int time_t {aka long int} | %ld BiRewire.c: In function 'analysis_ex': BiRewire.c:221:51: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long int'} [-Wformat=] 221 | Rprintf("DONE in %d seconds \n",-(tin-tfin)); | ~^ ~~~~~~~~~~~ | | | | int time_t {aka long int} | %ld BiRewire.c:229:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long int'} [-Wformat=] 229 | Rprintf("DONE in %d seconds \n",-(tin-tfin)); | ~^ ~~~~~~~~~~~ | | | | int time_t {aka long int} | %ld BiRewire.c: In function 'rewire_bipartite': BiRewire.c:280:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long int'} [-Wformat=] 280 | Rprintf("DONE in %d seconds \n",-(tin-tfin)); | ~^ ~~~~~~~~~~~ | | | | int time_t {aka long int} | %ld BiRewire.c: In function 'rewire_bipartite_ex': BiRewire.c:332:51: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long int'} [-Wformat=] 332 | Rprintf("DONE in %d seconds \n",-(tin-tfin)); | ~^ ~~~~~~~~~~~ | | | | int time_t {aka long int} | %ld BiRewire.c:339:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long int'} [-Wformat=] 339 | Rprintf("DONE in %d seconds \n",-(tin-tfin)); | ~^ ~~~~~~~~~~~ | | | | int time_t {aka long int} | %ld BiRewire.c: In function 'rewire_sparse_bipartite': BiRewire.c:402:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long int'} [-Wformat=] 402 | Rprintf("DONE in %d seconds \n",-(tin-tfin)); | ~^ ~~~~~~~~~~~ | | | | int time_t {aka long int} | %ld BiRewire.c: In function 'rewire_sparse_bipartite_ex': BiRewire.c:454:51: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long int'} [-Wformat=] 454 | Rprintf("DONE in %d seconds \n",-(tin-tfin)); | ~^ ~~~~~~~~~~~ | | | | int time_t {aka long int} | %ld BiRewire.c:461:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long int'} [-Wformat=] 461 | Rprintf("DONE in %d seconds \n",-(tin-tfin)); | ~^ ~~~~~~~~~~~ | | | | int time_t {aka long int} | %ld BiRewire.c: In function 'analysis_undirected': BiRewire.c:588:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long int'} [-Wformat=] 588 | Rprintf("DONE in %d seconds \n",-(tin-tfin)); | ~^ ~~~~~~~~~~~ | | | | int time_t {aka long int} | %ld BiRewire.c: In function 'analysis_undirected_ex': BiRewire.c:652:51: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long int'} [-Wformat=] 652 | Rprintf("DONE in %d seconds \n",-(tin-tfin)); | ~^ ~~~~~~~~~~~ | | | | int time_t {aka long int} | %ld BiRewire.c:737:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long int'} [-Wformat=] 737 | Rprintf("DONE in %d seconds \n",-(tin-tfin)); | ~^ ~~~~~~~~~~~ | | | | int time_t {aka long int} | %ld BiRewire.c: In function 'rewire': BiRewire.c:844:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long int'} [-Wformat=] 844 | Rprintf("DONE in %d seconds \n",-(tin-tfin)); | ~^ ~~~~~~~~~~~ | | | | int time_t {aka long int} | %ld BiRewire.c: In function 'rewire_ex': BiRewire.c:893:51: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long int'} [-Wformat=] 893 | Rprintf("DONE in %d seconds \n",-(tin-tfin)); | ~^ ~~~~~~~~~~~ | | | | int time_t {aka long int} | %ld BiRewire.c:962:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long int'} [-Wformat=] 962 | Rprintf("DONE in %d seconds \n",-(tin-tfin)); | ~^ ~~~~~~~~~~~ | | | | int time_t {aka long int} | %ld BiRewire.c: In function 'rewire_sparse': BiRewire.c:1066:30: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses] 1066 | if( a!=c && b!=d & a!=d && c!=b && (( ad==1 && cb==1 )|| (ac==1 && bd==1) )) { | ~^~~ BiRewire.c:1096:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long int'} [-Wformat=] 1096 | Rprintf("DONE in %d seconds \n",-(tin-tfin)); | ~^ ~~~~~~~~~~~ | | | | int time_t {aka long int} | %ld BiRewire.c: In function 'rewire_sparse_ex': BiRewire.c:1144:51: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long int'} [-Wformat=] 1144 | Rprintf("DONE in %d seconds \n",-(tin-tfin)); | ~^ ~~~~~~~~~~~ | | | | int time_t {aka long int} | %ld BiRewire.c:1149:30: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses] 1149 | if( a!=c && b!=d & a!=d && c!=b && (( ad==1 && cb==1 )|| (ac==1 && bd==1) )) { | ~^~~ BiRewire.c:1183:35: warning: format '%d' expects argument of type 'int', but argument 2 has type 'time_t' {aka 'long int'} [-Wformat=] 1183 | Rprintf("DONE in %d seconds \n",-(tin-tfin)); | ~^ ~~~~~~~~~~~ | | | | int time_t {aka long int} | %ld gcc -I"/home/biocbuild/R/R-4.4.1/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c interface.c -o interface.o interface.c: In function 'R_rewire_bipartite': interface.c:105:25: warning: too many arguments for format [-Wformat-extra-args] 105 | warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ interface.c: In function 'R_rewire_sparse_bipartite': interface.c:147:25: warning: too many arguments for format [-Wformat-extra-args] 147 | warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ interface.c: In function 'R_rewire': interface.c:252:25: warning: too many arguments for format [-Wformat-extra-args] 252 | warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ interface.c: In function 'R_rewire_sparse': interface.c:296:25: warning: too many arguments for format [-Wformat-extra-args] 296 | warning("Reached the maximum number admissible of iterations!\n",asInteger(MAXITER)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -shared -L/home/biocbuild/R/R-4.4.1/lib -L/usr/local/lib -o BiRewire.so BiRewire.o interface.o -L/home/biocbuild/R/R-4.4.1/lib -lR installing to /home/biocbuild/R/R-4.4.1/site-library/00LOCK-BiRewire/00new/BiRewire/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiRewire)