############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL ACME ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘ACME’ ... ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ gcc -I"/home/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c windowChisq.c -o windowChisq.o windowChisq.c: In function ‘windowChisq’: windowChisq.c:58:21: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses] 58 | firstprobe>0) { | ~~~~~~~~~~^~ windowChisq.c:63:20: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses] 63 | lastprobe<(na-1)) { | ~~~~~~~~~^~~~~~~ windowChisq.c:21:11: warning: unused variable ‘xa’ [-Wunused-variable] 21 | double *xa,*xlocations,*xchivals; | ^~ windowChisq.c: At top level: windowChisq.c:86:20: warning: initialization of ‘void * (*)(void)’ from incompatible pointer type ‘struct SEXPREC * (*)(struct SEXPREC *, struct SEXPREC *, struct SEXPREC *, struct SEXPREC *, struct SEXPREC *)’ [-Wincompatible-pointer-types] 86 | {"windowChisq",&windowChisq,5}, | ^ windowChisq.c:86:20: note: (near initialization for ‘callMethods[0].fun’) gcc -shared -L/home/biocbuild/bbs-3.20-bioc/R/lib -L/usr/local/lib -o ACME.so windowChisq.o -L/home/biocbuild/bbs-3.20-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.20-bioc/R/site-library/00LOCK-ACME/00new/ACME/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ACME)