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### Running command:
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###   /home/hpages/bbs-3.18-bioc-R41/R/bin/R CMD check --install=check:illuminaio.install-out.txt --library=/home/hpages/bbs-3.18-bioc-R41/R/site-library --timings illuminaio_0.44.0.tar.gz
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* using log directory ‘/home/hpages/bbs-3.18-bioc-R41/meat/illuminaio.Rcheck’
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘illuminaio/DESCRIPTION’ ... OK
* this is package ‘illuminaio’ version ‘0.44.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘illuminaio’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘readBPM.R’
  Running ‘readIDAT_370k.R’
  Running ‘readIDAT_370k_gz.R’
  Running ‘readIDAT_450k.R’
  Running ‘readIDAT_450k_gz.R’
  Running ‘readIDAT_gs_wg6v2.R’
  Running ‘readIDAT_ht12v4.R’
  Running ‘readIDAT_wg6v2.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘EncryptedFormat.Rnw’... OK
  ‘illuminaio.Rnw’... OK
 OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/hpages/bbs-3.18-bioc-R41/meat/illuminaio.Rcheck/00check.log’
for details.