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### Running command:
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###   /home/hpages/bbs-3.18-bioc/R/bin/R CMD check --install=check:OrganismDbi.install-out.txt --library=/home/hpages/bbs-3.18-bioc-testing/Rlibs --timings OrganismDbi_1.43.0.tar.gz
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* using log directory ‘/home/hpages/bbs-3.18-bioc-testing/meat/OrganismDbi.Rcheck’
* using R version 4.3.0 Patched (2023-05-23 r84466)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 12.2.0-17ubuntu1) 12.2.0
    GNU Fortran (Ubuntu 12.2.0-17ubuntu1) 12.2.0
* running under: Ubuntu 23.04
* using session charset: UTF-8
* checking for file ‘OrganismDbi/DESCRIPTION’ ... OK
* this is package ‘OrganismDbi’ version ‘1.43.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘OrganismDbi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: ‘BiocGenerics:::testPackage’
  See the note in ?`:::` about the use of this operator.
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  ‘.biocAnnPackages’ ‘.extractPkgsAndCols’ ‘.gentlyExtractDbFiles’
  ‘.lookupDbNameFromKeytype’ ‘.mungeGraphData’ ‘.taxIdToOrgDb’
  ‘.taxIdToOrgDbName’ ‘.testGraphData’ ‘.testKeys’ ‘OrganismDb’
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
checkRd: (5) OrganismDb.Rd:66-70: \item in \describe must have non-empty label
checkRd: (5) OrganismDb.Rd:71-94: \item in \describe must have non-empty label
checkRd: (5) OrganismDb.Rd:95-99: \item in \describe must have non-empty label
checkRd: (5) OrganismDb.Rd:100-106: \item in \describe must have non-empty label
checkRd: (5) OrganismDb.Rd:107-124: \item in \describe must have non-empty label
checkRd: (5) OrganismDb.Rd:125-148: \item in \describe must have non-empty label
checkRd: (5) OrganismDb.Rd:149-160: \item in \describe must have non-empty label
checkRd: (5) OrganismDb.Rd:161-164: \item in \describe must have non-empty label
checkRd: (5) OrganismDb.Rd:165-168: \item in \describe must have non-empty label
checkRd: (5) OrganismDb.Rd:169-175: \item in \describe must have non-empty label
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                            user system elapsed
makeOrganismDbFromBiomart 22.324  0.613  66.977
rangeBasedAccessors       11.286  0.128  11.416
OrganismDb                 7.474  0.212   7.699
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘OrganismDbi_unit_tests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘OrganismDbi.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 1 NOTE
See
  ‘/home/hpages/bbs-3.18-bioc-testing/meat/OrganismDbi.Rcheck/00check.log’
for details.