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### Running command:
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###   F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:tRNAdbImport.install-out.txt --library=F:\biocbuild\bbs-3.16-bioc\R\library --no-vignettes --timings tRNAdbImport_1.16.0.tar.gz
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* using log directory 'F:/biocbuild/bbs-3.16-bioc/meat/tRNAdbImport.Rcheck'
* using R version 4.2.3 (2023-03-15 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'tRNAdbImport/DESCRIPTION' ... OK
* this is package 'tRNAdbImport' version '1.16.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'tRNAdbImport' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'BiocGenerics'
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... ERROR
Running examples in 'tRNAdbImport-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: import.tRNAdb
> ### Title: Importing information from the tRNA db as GRanges object
> ### Aliases: import.tRNAdb import.mttRNAdb import.tRNAdb.id
> ###   import.mttRNAdb.id import.tRNAdb.blast import.mttRNAdb.blast
> ###   tRNAdb2GFF TRNA_DB_URL TRNA_DB_URL_MT
> ### Keywords: datasets
> 
> ### ** Examples
> 
> import.tRNAdb(organism = "Saccharomyces cerevisiae",
+               aminoacids = c("Phe","Ala"))
Error in `stringr::str_split()`:
! `string` must be a vector, not a <xml_document/xml_node> object.
Backtrace:
    ▆
 1. ├─tRNAdbImport::import.tRNAdb(...)
 2. │ └─tRNAdbImport:::.get_trna_db_result(...)
 3. │   └─tRNAdbImport:::.extract_tRNAdb_sequences(...)
 4. │     └─stringr::str_split(input, "\n")
 5. │       └─stringr:::check_lengths(string, pattern)
 6. │         └─vctrs::vec_size_common(...)
 7. └─vctrs:::stop_scalar_type(`<fn>`(`<xml_dcmn>`), "string", `<env>`)
 8.   └─vctrs:::stop_vctrs(...)
 9.     └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = call)
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  'F:/biocbuild/bbs-3.16-bioc/meat/tRNAdbImport.Rcheck/00check.log'
for details.