############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf rqubic.buildbin-libdir && mkdir rqubic.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh rqubic_1.43.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R rqubic.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=rqubic.buildbin-libdir rqubic_1.43.0.tar.gz' >>>>>>> * installing *source* package ‘rqubic’ ... ** using staged installation ** libs clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c bicluster.c -o bicluster.o bicluster.c:354:15: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] if (flag=ss) (*m_cnt)++; ~~~~^~~ bicluster.c:354:15: note: place parentheses around the assignment to silence this warning if (flag=ss) (*m_cnt)++; ^ ( ) bicluster.c:354:15: note: use '==' to turn this assignment into an equality comparison if (flag=ss) (*m_cnt)++; ^ == 1 warning generated. clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c discretize.c -o discretize.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c fib.c -o fib.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c graph.c -o graph.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rqubic.c -o rqubic.o clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o rqubic.so bicluster.o discretize.o fib.o graph.o rqubic.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.16-bioc/meat/rqubic.buildbin-libdir/00LOCK-rqubic/00new/rqubic/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rqubic) >>>>>>> >>>>>>> FIXING LINKS FOR rqubic.buildbin-libdir/rqubic/libs/rqubic.so >>>>>>> ERROR: R installation problem: File /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib not found!